data_6RCR # _model_server_result.job_id Z34K2h1qWhj9VnVioWeUeg _model_server_result.datetime_utc '2025-02-28 06:55:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rcr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6RCR # _exptl.entry_id 6RCR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RCR _cell.length_a 68.291 _cell.length_b 68.291 _cell.length_c 179.612 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RCR _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 68.291 68.291 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O11 DXT . A DXT 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 B O12 DXT . A DXT 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc3 C MG MG . A MG 302 1_555 I O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc4 C MG MG . A MG 302 1_555 I O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc5 C MG MG . A MG 302 1_555 I O HOH . A HOH 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc6 C MG MG . A MG 302 1_555 I O HOH . A HOH 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'C22 H24 N2 O8' _chem_comp.formula_weight 444.435 _chem_comp.id DXT _chem_comp.mon_nstd_flag . _chem_comp.name (4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOXYTETRACYCLINE;DOXYCYCLINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C4B DXT sing 70 n n C1 O1 DXT doub 71 n n C1 C2 DXT sing 72 n n C2 C21 DXT sing 73 n n C2 C3 DXT doub 74 n n O21 C21 DXT doub 75 n n C21 N21 DXT sing 76 n n N21 H211 DXT sing 77 n n N21 H212 DXT sing 78 n n C3 O3 DXT sing 79 n n C3 C4 DXT sing 80 n n O3 HO3 DXT sing 81 n n C4 H4 DXT sing 82 n n C4 N4 DXT sing 83 n n C4 C4A DXT sing 84 n n N4 C41 DXT sing 85 n n N4 C42 DXT sing 86 n n C41 H411 DXT sing 87 n n C41 H412 DXT sing 88 n n C41 H413 DXT sing 89 n n C42 H421 DXT sing 90 n n C42 H422 DXT sing 91 n n C42 H423 DXT sing 92 n n C4A C4B DXT sing 93 n n C4A H4A DXT sing 94 n n C4A C5 DXT sing 95 n n C5 H5 DXT sing 96 n n C5 O5 DXT sing 97 n n C5 C5A DXT sing 98 n n O5 HO5 DXT sing 99 n n C5A C5B DXT sing 100 n n C5A H5A DXT sing 101 n n C5A C6 DXT sing 102 n n C6 H6 DXT sing 103 n n C6 C6A DXT sing 104 n n C6 C61 DXT sing 105 n n C61 H611 DXT sing 106 n n C61 H612 DXT sing 107 n n C61 H613 DXT sing 108 n n C6A C6B DXT sing 109 n y C6A C7 DXT doub 110 n y C7 H7 DXT sing 111 n n C7 C8 DXT sing 112 n y C8 H8 DXT sing 113 n n C8 C9 DXT doub 114 n y C9 C10 DXT sing 115 n y C9 H9 DXT sing 116 n n C10 O10 DXT sing 117 n n C10 C6B DXT doub 118 n y O10 H10 DXT sing 119 n n C6B C11 DXT sing 120 n n C11 O11 DXT doub 121 n n C11 C5B DXT sing 122 n n C5B C12 DXT doub 123 n n C12 O12 DXT sing 124 n n C12 C4B DXT sing 125 n n O12 H12 DXT sing 126 n n C4B O13 DXT sing 127 n n O13 H13 DXT sing 128 n n # _atom_sites.entry_id 6RCR _atom_sites.fract_transf_matrix[1][1] 0.014643 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014643 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DXT A 1 301 301 DXT DXT . C 3 MG A 1 302 302 MG MG . D 4 CL A 1 303 304 CL CL . E 4 CL A 1 304 305 CL CL . F 4 CL A 1 305 306 CL CL . G 4 CL A 1 306 307 CL CL . H 4 CL A 1 307 308 CL CL . I 5 HOH A 1 401 505 HOH HOH . I 5 HOH A 2 402 543 HOH HOH . I 5 HOH A 3 403 506 HOH HOH . I 5 HOH A 4 404 408 HOH HOH . I 5 HOH A 5 405 545 HOH HOH . I 5 HOH A 6 406 503 HOH HOH . I 5 HOH A 7 407 428 HOH HOH . I 5 HOH A 8 408 520 HOH HOH . I 5 HOH A 9 409 518 HOH HOH . I 5 HOH A 10 410 531 HOH HOH . I 5 HOH A 11 411 403 HOH HOH . I 5 HOH A 12 412 459 HOH HOH . I 5 HOH A 13 413 567 HOH HOH . I 5 HOH A 14 414 495 HOH HOH . I 5 HOH A 15 415 411 HOH HOH . I 5 HOH A 16 416 423 HOH HOH . I 5 HOH A 17 417 515 HOH HOH . I 5 HOH A 18 418 532 HOH HOH . I 5 HOH A 19 419 420 HOH HOH . I 5 HOH A 20 420 452 HOH HOH . I 5 HOH A 21 421 527 HOH HOH . I 5 HOH A 22 422 442 HOH HOH . I 5 HOH A 23 423 431 HOH HOH . I 5 HOH A 24 424 406 HOH HOH . I 5 HOH A 25 425 454 HOH HOH . I 5 HOH A 26 426 419 HOH HOH . I 5 HOH A 27 427 401 HOH HOH . I 5 HOH A 28 428 407 HOH HOH . I 5 HOH A 29 429 425 HOH HOH . I 5 HOH A 30 430 430 HOH HOH . I 5 HOH A 31 431 448 HOH HOH . I 5 HOH A 32 432 405 HOH HOH . I 5 HOH A 33 433 497 HOH HOH . I 5 HOH A 34 434 469 HOH HOH . I 5 HOH A 35 435 421 HOH HOH . I 5 HOH A 36 436 433 HOH HOH . I 5 HOH A 37 437 413 HOH HOH . I 5 HOH A 38 438 427 HOH HOH . I 5 HOH A 39 439 512 HOH HOH . I 5 HOH A 40 440 429 HOH HOH . I 5 HOH A 41 441 404 HOH HOH . I 5 HOH A 42 442 480 HOH HOH . I 5 HOH A 43 443 444 HOH HOH . I 5 HOH A 44 444 553 HOH HOH . I 5 HOH A 45 445 435 HOH HOH . I 5 HOH A 46 446 521 HOH HOH . I 5 HOH A 47 447 441 HOH HOH . I 5 HOH A 48 448 440 HOH HOH . I 5 HOH A 49 449 415 HOH HOH . I 5 HOH A 50 450 500 HOH HOH . I 5 HOH A 51 451 424 HOH HOH . I 5 HOH A 52 452 418 HOH HOH . I 5 HOH A 53 453 438 HOH HOH . I 5 HOH A 54 454 533 HOH HOH . I 5 HOH A 55 455 541 HOH HOH . I 5 HOH A 56 456 432 HOH HOH . I 5 HOH A 57 457 453 HOH HOH . I 5 HOH A 58 458 436 HOH HOH . I 5 HOH A 59 459 508 HOH HOH . I 5 HOH A 60 460 445 HOH HOH . I 5 HOH A 61 461 402 HOH HOH . I 5 HOH A 62 462 414 HOH HOH . I 5 HOH A 63 463 471 HOH HOH . I 5 HOH A 64 464 546 HOH HOH . I 5 HOH A 65 465 522 HOH HOH . I 5 HOH A 66 466 451 HOH HOH . I 5 HOH A 67 467 412 HOH HOH . I 5 HOH A 68 468 410 HOH HOH . I 5 HOH A 69 469 524 HOH HOH . I 5 HOH A 70 470 457 HOH HOH . I 5 HOH A 71 471 422 HOH HOH . I 5 HOH A 72 472 409 HOH HOH . I 5 HOH A 73 473 461 HOH HOH . I 5 HOH A 74 474 464 HOH HOH . I 5 HOH A 75 475 458 HOH HOH . I 5 HOH A 76 476 470 HOH HOH . I 5 HOH A 77 477 502 HOH HOH . I 5 HOH A 78 478 465 HOH HOH . I 5 HOH A 79 479 446 HOH HOH . I 5 HOH A 80 480 492 HOH HOH . I 5 HOH A 81 481 472 HOH HOH . I 5 HOH A 82 482 434 HOH HOH . I 5 HOH A 83 483 437 HOH HOH . I 5 HOH A 84 484 474 HOH HOH . I 5 HOH A 85 485 525 HOH HOH . I 5 HOH A 86 486 481 HOH HOH . I 5 HOH A 87 487 443 HOH HOH . I 5 HOH A 88 488 473 HOH HOH . I 5 HOH A 89 489 466 HOH HOH . I 5 HOH A 90 490 479 HOH HOH . I 5 HOH A 91 491 490 HOH HOH . I 5 HOH A 92 492 514 HOH HOH . I 5 HOH A 93 493 439 HOH HOH . I 5 HOH A 94 494 450 HOH HOH . I 5 HOH A 95 495 563 HOH HOH . I 5 HOH A 96 496 416 HOH HOH . I 5 HOH A 97 497 426 HOH HOH . I 5 HOH A 98 498 566 HOH HOH . I 5 HOH A 99 499 477 HOH HOH . I 5 HOH A 100 500 476 HOH HOH . I 5 HOH A 101 501 468 HOH HOH . I 5 HOH A 102 502 478 HOH HOH . I 5 HOH A 103 503 484 HOH HOH . I 5 HOH A 104 504 568 HOH HOH . I 5 HOH A 105 505 455 HOH HOH . I 5 HOH A 106 506 501 HOH HOH . I 5 HOH A 107 507 475 HOH HOH . I 5 HOH A 108 508 509 HOH HOH . I 5 HOH A 109 509 483 HOH HOH . I 5 HOH A 110 510 548 HOH HOH . I 5 HOH A 111 511 482 HOH HOH . I 5 HOH A 112 512 526 HOH HOH . I 5 HOH A 113 513 491 HOH HOH . I 5 HOH A 114 514 486 HOH HOH . I 5 HOH A 115 515 530 HOH HOH . I 5 HOH A 116 516 547 HOH HOH . I 5 HOH A 117 517 513 HOH HOH . I 5 HOH A 118 518 456 HOH HOH . I 5 HOH A 119 519 462 HOH HOH . I 5 HOH A 120 520 485 HOH HOH . I 5 HOH A 121 521 557 HOH HOH . I 5 HOH A 122 522 489 HOH HOH . I 5 HOH A 123 523 516 HOH HOH . I 5 HOH A 124 524 537 HOH HOH . I 5 HOH A 125 525 519 HOH HOH . I 5 HOH A 126 526 447 HOH HOH . I 5 HOH A 127 527 493 HOH HOH . I 5 HOH A 128 528 494 HOH HOH . I 5 HOH A 129 529 562 HOH HOH . I 5 HOH A 130 530 488 HOH HOH . I 5 HOH A 131 531 536 HOH HOH . I 5 HOH A 132 532 561 HOH HOH . I 5 HOH A 133 533 565 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DXT . . . B 2 19.366 33.871 33.765 1 44.72 ? C1 DXT 301 A 1 HETATM 2 O O1 DXT . . . B 2 18.725 34.405 32.841 1 48.01 ? O1 DXT 301 A 1 HETATM 3 C C2 DXT . . . B 2 18.907 32.728 34.507 1 44.61 ? C2 DXT 301 A 1 HETATM 4 O O21 DXT . . . B 2 17.273 31.053 34.813 1 44.36 ? O21 DXT 301 A 1 HETATM 5 C C21 DXT . . . B 2 17.717 31.946 34.102 1 46.67 ? C21 DXT 301 A 1 HETATM 6 N N21 DXT . . . B 2 17.09 32.272 32.824 1 53.18 ? N21 DXT 301 A 1 HETATM 7 C C3 DXT . . . B 2 19.608 32.341 35.628 1 45.23 ? C3 DXT 301 A 1 HETATM 8 O O3 DXT . . . B 2 19.563 31.11 36.104 1 44.83 ? O3 DXT 301 A 1 HETATM 9 C C4 DXT . . . B 2 20.442 33.284 36.461 1 42.33 ? C4 DXT 301 A 1 HETATM 10 N N4 DXT . . . B 2 21.64 32.58 37.012 1 42.79 ? N4 DXT 301 A 1 HETATM 11 C C41 DXT . . . B 2 22.337 33.323 38.071 1 41.46 ? C41 DXT 301 A 1 HETATM 12 C C42 DXT . . . B 2 22.619 31.974 36.11 1 45.39 ? C42 DXT 301 A 1 HETATM 13 C C4A DXT . . . B 2 20.774 34.606 35.726 1 42.16 ? C4A DXT 301 A 1 HETATM 14 C C5 DXT . . . B 2 19.854 35.773 36.137 1 44.42 ? C5 DXT 301 A 1 HETATM 15 O O5 DXT . . . B 2 19.68 35.823 37.563 1 41.21 ? O5 DXT 301 A 1 HETATM 16 C C5A DXT . . . B 2 20.385 37.119 35.619 1 40.27 ? C5A DXT 301 A 1 HETATM 17 C C6 DXT . . . B 2 19.356 38.273 35.707 1 42.31 ? C6 DXT 301 A 1 HETATM 18 C C61 DXT . . . B 2 18.768 38.494 37.106 1 42.72 ? C61 DXT 301 A 1 HETATM 19 C C6A DXT . . . B 2 19.927 39.571 35.158 1 42.09 ? C6A DXT 301 A 1 HETATM 20 C C7 DXT . . . B 2 19.554 40.81 35.661 1 41.44 ? C7 DXT 301 A 1 HETATM 21 C C8 DXT . . . B 2 20.116 41.973 35.161 1 44.19 ? C8 DXT 301 A 1 HETATM 22 C C9 DXT . . . B 2 21.011 41.937 34.127 1 43.46 ? C9 DXT 301 A 1 HETATM 23 C C10 DXT . . . B 2 21.372 40.714 33.576 1 43.72 ? C10 DXT 301 A 1 HETATM 24 O O10 DXT . . . B 2 22.279 40.708 32.578 1 45.61 ? O10 DXT 301 A 1 HETATM 25 C C6B DXT . . . B 2 20.85 39.516 34.099 1 43.48 ? C6B DXT 301 A 1 HETATM 26 C C11 DXT . . . B 2 21.265 38.243 33.521 1 43.48 ? C11 DXT 301 A 1 HETATM 27 O O11 DXT . . . B 2 21.941 38.234 32.437 1 47.96 ? O11 DXT 301 A 1 HETATM 28 C C5B DXT . . . B 2 20.911 37.013 34.202 1 43.9 ? C5B DXT 301 A 1 HETATM 29 C C12 DXT . . . B 2 21.062 35.811 33.582 1 43.46 ? C12 DXT 301 A 1 HETATM 30 O O12 DXT . . . B 2 21.618 35.728 32.384 1 48.03 ? O12 DXT 301 A 1 HETATM 31 C C4B DXT . . . B 2 20.727 34.476 34.2 1 46.01 ? C4B DXT 301 A 1 HETATM 32 O O13 DXT . . . B 2 21.718 33.535 33.786 1 42.8 ? O13 DXT 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #