data_6RCY
#
_model_server_result.job_id            33nGEj3PCGpKNiw_ANLwdQ 
_model_server_result.datetime_utc      '2025-07-31 18:43:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rcy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    6RCY 
#
_exptl.entry_id    6RCY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              679.829 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-5-carbamimidamido-2-[[(2~{S})-2-[[(2~{S})-1-[5-(dimethylamino)naphthalen-1-yl]sulfonylpiperidin-2-yl]carbonylamino]-4-phenyl-butanoyl]amino]pentanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6RCY 
_cell.length_a            52.96 
_cell.length_b            52.96 
_cell.length_c            237.86 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RCY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C34 H45 N7 O6 S' 
_chem_comp.formula_weight    679.829 
_chem_comp.id                K0T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-5-carbamimidamido-2-[[(2~{S})-2-[[(2~{S})-1-[5-(dimethylamino)naphthalen-1-yl]sulfonylpiperidin-2-yl]carbonylamino]-4-phenyl-butanoyl]amino]pentanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C22 K0T doub 173 n y 
C23 C24 K0T sing 174 n y 
C22 C21 K0T sing 175 n y 
C13 C14 K0T sing 176 n n 
C13 C12 K0T sing 177 n n 
C24 C25 K0T doub 178 n y 
C21 C20 K0T sing 179 n n 
C21 C26 K0T doub 180 n y 
C14 C15 K0T sing 181 n n 
C20 C19 K0T sing 182 n n 
C12 N1 K0T sing 183 n n 
C25 C26 K0T sing 184 n y 
C15 C16 K0T sing 185 n n 
C19 C18 K0T sing 186 n n 
O2 C17 K0T doub 187 n n 
C18 N2 K0T sing 188 n n 
C18 C27 K0T sing 189 n n 
N6 C32 K0T doub 190 n n 
C17 N2 K0T sing 191 n n 
C17 C16 K0T sing 192 n n 
N1 C16 K0T sing 193 n n 
N1 S K0T sing 194 n n 
C10 C9 K0T doub 195 n y 
C10 C11 K0T sing 196 n y 
N3 C27 K0T sing 197 n n 
N3 C28 K0T sing 198 n n 
O4 C33 K0T doub 199 n n 
C9 C8 K0T sing 200 n y 
C29 C28 K0T sing 201 n n 
C29 C30 K0T sing 202 n n 
C31 N4 K0T sing 203 n n 
C31 C30 K0T sing 204 n n 
O S K0T doub 205 n n 
C27 O3 K0T doub 206 n n 
C32 N4 K0T sing 207 n n 
C32 N5 K0T sing 208 n n 
C11 C2 K0T doub 209 n y 
S O1 K0T doub 210 n n 
S C7 K0T sing 211 n n 
C28 C33 K0T sing 212 n n 
C33 O5 K0T sing 213 n n 
C8 C7 K0T doub 214 n y 
C8 C3 K0T sing 215 n y 
C2 C3 K0T sing 216 n y 
C2 N K0T sing 217 n n 
C7 C6 K0T sing 218 n y 
C N K0T sing 219 n n 
C3 C4 K0T doub 220 n y 
N C1 K0T sing 221 n n 
C6 C5 K0T doub 222 n y 
C4 C5 K0T sing 223 n y 
C4 H1 K0T sing 224 n n 
C5 H2 K0T sing 225 n n 
C6 H3 K0T sing 226 n n 
N2 H4 K0T sing 227 n n 
C9 H5 K0T sing 228 n n 
O5 H6 K0T sing 229 n n 
C10 H7 K0T sing 230 n n 
C11 H8 K0T sing 231 n n 
C12 H9 K0T sing 232 n n 
C12 H10 K0T sing 233 n n 
N3 H11 K0T sing 234 n n 
C13 H12 K0T sing 235 n n 
C13 H13 K0T sing 236 n n 
C14 H14 K0T sing 237 n n 
C14 H15 K0T sing 238 n n 
C15 H16 K0T sing 239 n n 
C15 H17 K0T sing 240 n n 
N4 H18 K0T sing 241 n n 
C H19 K0T sing 242 n n 
C H20 K0T sing 243 n n 
C H21 K0T sing 244 n n 
C1 H22 K0T sing 245 n n 
C1 H23 K0T sing 246 n n 
C1 H24 K0T sing 247 n n 
C16 H25 K0T sing 248 n n 
C18 H26 K0T sing 249 n n 
C19 H27 K0T sing 250 n n 
C19 H28 K0T sing 251 n n 
C20 H29 K0T sing 252 n n 
C20 H30 K0T sing 253 n n 
C22 H31 K0T sing 254 n n 
C23 H32 K0T sing 255 n n 
C24 H33 K0T sing 256 n n 
C25 H34 K0T sing 257 n n 
C26 H35 K0T sing 258 n n 
C28 H36 K0T sing 259 n n 
C29 H37 K0T sing 260 n n 
C29 H38 K0T sing 261 n n 
C30 H39 K0T sing 262 n n 
C30 H40 K0T sing 263 n n 
C31 H41 K0T sing 264 n n 
C31 H42 K0T sing 265 n n 
N5 H43 K0T sing 266 n n 
N5 H44 K0T sing 267 n n 
N6 H45 K0T sing 268 n n 
#
_atom_sites.entry_id                     6RCY 
_atom_sites.fract_transf_matrix[1][1]    0.018882 
_atom_sites.fract_transf_matrix[1][2]    0.010902 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021803 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004204 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 K0T A 1 201 201 K0T XXX . 
C 3 HOH A 1 301 6 HOH HOH . 
C 3 HOH A 2 302 5 HOH HOH . 
C 3 HOH A 3 303 8 HOH HOH . 
C 3 HOH A 4 304 12 HOH HOH . 
C 3 HOH A 5 305 9 HOH HOH . 
C 3 HOH A 6 306 10 HOH HOH . 
C 3 HOH A 7 307 2 HOH HOH . 
C 3 HOH A 8 308 7 HOH HOH . 
C 3 HOH A 9 309 1 HOH HOH . 
C 3 HOH A 10 310 11 HOH HOH . 
C 3 HOH A 11 311 3 HOH HOH . 
C 3 HOH A 12 312 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 K0T . . . B 2 -28.223 23.308 6.432 1 104.11 ? O3 K0T 201 A 1 
HETATM 2 C C4 K0T . . . B 2 -29.185 19.294 8.46 1 117.98 ? C4 K0T 201 A 1 
HETATM 3 C C5 K0T . . . B 2 -27.893 19.223 8.89 1 116.45 ? C5 K0T 201 A 1 
HETATM 4 O O4 K0T . . . B 2 -30.12 27.225 4.894 1 123.03 -1 O4 K0T 201 A 1 
HETATM 5 C C6 K0T . . . B 2 -26.886 18.763 8.054 1 112.87 ? C6 K0T 201 A 1 
HETATM 6 N N1 K0T . . . B 2 -25.912 19.083 4.448 1 90.9 ? N1 K0T 201 A 1 
HETATM 7 C C7 K0T . . . B 2 -27.174 18.36 6.778 1 108.62 ? C7 K0T 201 A 1 
HETATM 8 C C8 K0T . . . B 2 -28.523 18.331 6.301 1 110.75 ? C8 K0T 201 A 1 
HETATM 9 N N2 K0T . . . B 2 -27.461 21.51 4.341 1 88.87 ? N2 K0T 201 A 1 
HETATM 10 C C9 K0T . . . B 2 -28.908 17.766 5.056 1 110.99 ? C9 K0T 201 A 1 
HETATM 11 O O5 K0T . . . B 2 -30.182 26.608 7.049 1 125.24 ? O5 K0T 201 A 1 
HETATM 12 C C10 K0T . . . B 2 -30.218 17.729 4.671 1 114.2 ? C10 K0T 201 A 1 
HETATM 13 C C11 K0T . . . B 2 -31.215 18.258 5.476 1 118.04 ? C11 K0T 201 A 1 
HETATM 14 C C12 K0T . . . B 2 -26.273 18.585 3.09 1 84.27 ? C12 K0T 201 A 1 
HETATM 15 N N3 K0T . . . B 2 -28.351 24.915 4.846 1 100.85 ? N3 K0T 201 A 1 
HETATM 16 C C13 K0T . . . B 2 -25.17 18.887 2.095 1 77.21 ? C13 K0T 201 A 1 
HETATM 17 C C14 K0T . . . B 2 -23.885 19.246 2.799 1 76.99 ? C14 K0T 201 A 1 
HETATM 18 C C15 K0T . . . B 2 -24.035 20.507 3.638 1 79.24 ? C15 K0T 201 A 1 
HETATM 19 N N4 K0T . . . B 2 -25.671 30.424 5.745 1 124.44 ? N4 K0T 201 A 1 
HETATM 20 N N K0T . . . B 2 -31.904 19.503 7.51 1 121.12 ? N K0T 201 A 1 
HETATM 21 C C K0T . . . B 2 -32.392 20.772 6.994 1 118.74 ? C K0T 201 A 1 
HETATM 22 O O K0T . . . B 2 -25.884 16.719 5.212 1 101.43 ? O K0T 201 A 1 
HETATM 23 C C1 K0T . . . B 2 -32.837 18.657 8.236 1 126.68 ? C1 K0T 201 A 1 
HETATM 24 S S K0T . . . B 2 -25.778 18.05 5.724 1 101.08 ? S K0T 201 A 1 
HETATM 25 O O1 K0T . . . B 2 -24.612 18.437 6.453 1 101.05 ? O1 K0T 201 A 1 
HETATM 26 C C16 K0T . . . B 2 -25.285 20.437 4.523 1 87.45 ? C16 K0T 201 A 1 
HETATM 27 C C17 K0T . . . B 2 -26.135 21.69 4.306 1 87.95 ? C17 K0T 201 A 1 
HETATM 28 C C18 K0T . . . B 2 -28.436 22.574 4.159 1 93.57 ? C18 K0T 201 A 1 
HETATM 29 C C19 K0T . . . B 2 -29.845 21.976 4.081 1 95.83 ? C19 K0T 201 A 1 
HETATM 30 C C2 K0T . . . B 2 -30.908 18.831 6.708 1 118.52 ? C2 K0T 201 A 1 
HETATM 31 C C20 K0T . . . B 2 -30.036 21.092 2.842 1 92.12 ? C20 K0T 201 A 1 
HETATM 32 C C21 K0T . . . B 2 -31.38 20.415 2.695 1 92.95 ? C21 K0T 201 A 1 
HETATM 33 C C22 K0T . . . B 2 -31.508 19.276 1.902 1 96.19 ? C22 K0T 201 A 1 
HETATM 34 C C23 K0T . . . B 2 -32.735 18.642 1.762 1 100.29 ? C23 K0T 201 A 1 
HETATM 35 C C24 K0T . . . B 2 -33.847 19.127 2.424 1 99.15 ? C24 K0T 201 A 1 
HETATM 36 C C25 K0T . . . B 2 -33.733 20.261 3.208 1 96.59 ? C25 K0T 201 A 1 
HETATM 37 C C26 K0T . . . B 2 -32.512 20.906 3.333 1 92.58 ? C26 K0T 201 A 1 
HETATM 38 C C27 K0T . . . B 2 -28.341 23.639 5.256 1 98.96 ? C27 K0T 201 A 1 
HETATM 39 C C28 K0T . . . B 2 -28.239 26.062 5.734 1 108.66 ? C28 K0T 201 A 1 
HETATM 40 C C29 K0T . . . B 2 -27.27 27.096 5.152 1 107.77 ? C29 K0T 201 A 1 
HETATM 41 C C3 K0T . . . B 2 -29.552 18.847 7.161 1 116.07 ? C3 K0T 201 A 1 
HETATM 42 C C30 K0T . . . B 2 -27.091 28.421 5.887 1 114.86 ? C30 K0T 201 A 1 
HETATM 43 C C31 K0T . . . B 2 -25.915 29.086 5.181 1 118.04 ? C31 K0T 201 A 1 
HETATM 44 C C32 K0T . . . B 2 -24.856 31.306 5.317 1 124.41 ? C32 K0T 201 A 1 
HETATM 45 C C33 K0T . . . B 2 -29.615 26.664 5.97 1 120.27 ? C33 K0T 201 A 1 
HETATM 46 N N5 K0T . . . B 2 -24.668 32.503 5.879 1 128.38 ? N5 K0T 201 A 1 
HETATM 47 N N6 K0T . . . B 2 -24.133 31.007 4.232 1 119.62 ? N6 K0T 201 A 1 
HETATM 48 O O2 K0T . . . B 2 -25.598 22.787 4.149 1 87.62 ? O2 K0T 201 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#