data_6RDW # _model_server_result.job_id xRASJMlYJBYbSKJQpaFz3g _model_server_result.datetime_utc '2024-11-23 23:29:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rdw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PA","auth_seq_id":602}' # _entry.id 6RDW # _exptl.entry_id 6RDW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 21 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RDW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 31-meric _pdbx_struct_assembly.oligomeric_count 31 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 21 HA N N ? 21 JA N N ? 21 LA N N ? 21 NA N N ? 21 PA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 U NE2 HIS 248 M HIS 248 1_555 FA ZN ZN . M ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc2 Z OG1 THR 232 T THR 232 1_555 HA MG MG . T MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc3 GA O1G ATP . T ATP 1001 1_555 HA MG MG . T MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc4 GA O3G ATP . T ATP 1001 1_555 HA MG MG . T MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc5 GA O2B ATP . T ATP 1001 1_555 HA MG MG . T MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc6 AA OG1 THR 232 U THR 232 1_555 JA MG MG . U MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc7 IA O1G ATP . U ATP 1001 1_555 JA MG MG . U MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc8 IA O2B ATP . U ATP 1001 1_555 JA MG MG . U MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc9 BA OG1 THR 232 V THR 232 1_555 LA MG MG . V MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc10 KA O1G ATP . V ATP 1001 1_555 LA MG MG . V MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc11 KA O2B ATP . V ATP 1001 1_555 LA MG MG . V MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc12 CA OG1 THR 190 X THR 190 1_555 NA MG MG . X MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc13 CA OE2 GLU 215 X GLU 215 1_555 NA MG MG . X MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc14 CA OE1 GLU 219 X GLU 219 1_555 NA MG MG . X MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc15 MA O2B ADP . X ADP 601 1_555 NA MG MG . X MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc16 DA OG1 THR 190 Y THR 190 1_555 PA MG MG . Y MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc17 DA OE2 GLU 215 Y GLU 215 1_555 PA MG MG . Y MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc18 DA OE2 GLU 219 Y GLU 219 1_555 PA MG MG . Y MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc19 OA O3B ADP . Y ADP 601 1_555 PA MG MG . Y MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RDW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code FA 19 ZN M 1 600 600 ZN ZN . GA 20 ATP T 1 1001 1001 ATP ATP . HA 21 MG T 1 1002 1002 MG MG . IA 20 ATP U 1 1001 1001 ATP ATP . JA 21 MG U 1 1002 1002 MG MG . KA 20 ATP V 1 1001 1001 ATP ATP . LA 21 MG V 1 1002 1002 MG MG . MA 22 ADP X 1 601 1028 ADP ADP . NA 21 MG X 1 602 1029 MG MG . OA 22 ADP Y 1 601 1028 ADP ADP . PA 21 MG Y 1 602 1029 MG MG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id PA _atom_site.label_entity_id 21 _atom_site.Cartn_x 138.772 _atom_site.Cartn_y 277.659 _atom_site.Cartn_z 272.613 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 46.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id Y _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 85 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #