data_6REZ
#
_model_server_result.job_id            6LaYpUX9B9Vmfzivh9ZxFQ 
_model_server_result.datetime_utc      '2024-10-15 15:27:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rez 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"XA","auth_seq_id":309}' 
#
_entry.id    6REZ 
#
_exptl.entry_id    6REZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6REZ 
_cell.length_a            130.241 
_cell.length_b            241.392 
_cell.length_c            135.109 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6REZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 V N N 
? 4 FA N N 
? 4 NA N N 
? 4 XA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 253 A LYS 255 1_555 N C15 RET . A RET 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale2 B NZ LYS 253 B LYS 255 1_555 W C15 RET . B RET 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale3 C NZ LYS 253 C LYS 255 1_555 GA C15 RET . C RET 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale4 D NZ LYS 253 D LYS 255 1_555 OA C15 RET . D RET 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale5 E NZ LYS 253 E LYS 255 1_555 YA C15 RET . E RET 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? 
metalc ? metalc1 A OH TYR 23 A TYR 25 1_555 M NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc2 A O THR 81 A THR 83 1_555 M NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc3 A O PHE 84 A PHE 86 1_555 M NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc4 A OD1 ASP 100 A ASP 102 1_555 XA NA NA . E NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc5 M NA NA . A NA 308 1_555 ZA O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc6 M NA NA . A NA 308 1_555 B OD1 ASP 100 B ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc7 M NA NA . A NA 308 1_555 B OD2 ASP 100 B ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? 
metalc ? metalc8 B OH TYR 23 B TYR 25 1_555 V NA NA . B NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
metalc ? metalc9 B O THR 81 B THR 83 1_555 V NA NA . B NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc10 B O PHE 84 B PHE 86 1_555 V NA NA . B NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc11 V NA NA . B NA 308 1_555 AB O HOH . B HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc12 V NA NA . B NA 308 1_555 C OD1 ASP 100 C ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc13 C OH TYR 23 C TYR 25 1_555 FA NA NA . C NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc14 C O THR 81 C THR 83 1_555 FA NA NA . C NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc15 C O PHE 84 C PHE 86 1_555 FA NA NA . C NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc16 FA NA NA . C NA 309 1_555 BB O HOH . C HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc17 FA NA NA . C NA 309 1_555 D OD1 ASP 100 D ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc18 D OH TYR 23 D TYR 25 1_555 NA NA NA . D NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc19 D O THR 81 D THR 83 1_555 NA NA NA . D NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc20 D O PHE 84 D PHE 86 1_555 NA NA NA . D NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc21 NA NA NA . D NA 307 1_555 CB O HOH . D HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc22 NA NA NA . D NA 307 1_555 E OD1 ASP 100 E ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc23 E OH TYR 23 E TYR 25 1_555 XA NA NA . E NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc24 E O THR 81 E THR 83 1_555 XA NA NA . E NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc25 E O PHE 84 E PHE 86 1_555 XA NA NA . E NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6REZ 
_atom_sites.fract_transf_matrix[1][1]    0.007678 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004143 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007401 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 LFA A 1 301 301 LFA LFA . 
G 2 LFA A 1 302 401 LFA LFA . 
H 3 OLC A 1 303 501 OLC OLC . 
I 2 LFA A 1 304 601 LFA LFA . 
J 2 LFA A 1 305 701 LFA LFA . 
K 2 LFA A 1 306 801 LFA LFA . 
L 2 LFA A 1 307 901 LFA LFA . 
M 4 NA A 1 308 5 NA NA . 
N 5 RET A 1 309 255 RET LYR . 
O 2 LFA B 1 301 301 LFA LFA . 
P 2 LFA B 1 302 401 LFA LFA . 
Q 3 OLC B 1 303 501 OLC OLC . 
R 2 LFA B 1 304 601 LFA LFA . 
S 2 LFA B 1 305 701 LFA LFA . 
T 2 LFA B 1 306 801 LFA LFA . 
U 2 LFA B 1 307 501 LFA LFA . 
V 4 NA B 1 308 2 NA NA . 
W 5 RET B 1 309 255 RET LYR . 
X 2 LFA C 1 301 301 LFA LFA . 
Y 3 OLC C 1 302 601 OLC OLC . 
Z 2 LFA C 1 303 701 LFA LFA . 
AA 2 LFA C 1 304 801 LFA LFA . 
BA 2 LFA C 1 305 901 LFA LFA . 
CA 2 LFA C 1 306 1001 LFA LFA . 
DA 2 LFA C 1 307 1101 LFA LFA . 
EA 2 LFA C 1 308 1201 LFA LFA . 
FA 4 NA C 1 309 1 NA NA . 
GA 5 RET C 1 310 255 RET LYR . 
HA 2 LFA D 1 301 301 LFA LFA . 
IA 3 OLC D 1 302 401 OLC OLC . 
JA 2 LFA D 1 303 501 LFA LFA . 
KA 2 LFA D 1 304 601 LFA LFA . 
LA 2 LFA D 1 305 701 LFA LFA . 
MA 2 LFA D 1 306 401 LFA LFA . 
NA 4 NA D 1 307 3 NA NA . 
OA 5 RET D 1 308 255 RET LYR . 
PA 2 LFA E 1 301 301 LFA LFA . 
QA 2 LFA E 1 302 501 LFA LFA . 
RA 3 OLC E 1 303 601 OLC OLC . 
SA 2 LFA E 1 304 701 LFA LFA . 
TA 2 LFA E 1 305 801 LFA LFA . 
UA 2 LFA E 1 306 901 LFA LFA . 
VA 2 LFA E 1 307 1001 LFA LFA . 
WA 2 LFA E 1 308 1101 LFA LFA . 
XA 4 NA E 1 309 4 NA NA . 
YA 5 RET E 1 310 255 RET LYR . 
ZA 6 HOH A 1 401 97 HOH HOH . 
ZA 6 HOH A 2 402 99 HOH HOH . 
ZA 6 HOH A 3 403 15 HOH HOH . 
ZA 6 HOH A 4 404 52 HOH HOH . 
ZA 6 HOH A 5 405 84 HOH HOH . 
ZA 6 HOH A 6 406 53 HOH HOH . 
ZA 6 HOH A 7 407 4 HOH HOH . 
ZA 6 HOH A 8 408 47 HOH HOH . 
ZA 6 HOH A 9 409 27 HOH HOH . 
ZA 6 HOH A 10 410 31 HOH HOH . 
ZA 6 HOH A 11 411 12 HOH HOH . 
ZA 6 HOH A 12 412 36 HOH HOH . 
ZA 6 HOH A 13 413 69 HOH HOH . 
ZA 6 HOH A 14 414 7 HOH HOH . 
ZA 6 HOH A 15 415 46 HOH HOH . 
ZA 6 HOH A 16 416 98 HOH HOH . 
ZA 6 HOH A 17 417 62 HOH HOH . 
AB 6 HOH B 1 401 85 HOH HOH . 
AB 6 HOH B 2 402 86 HOH HOH . 
AB 6 HOH B 3 403 16 HOH HOH . 
AB 6 HOH B 4 404 6 HOH HOH . 
AB 6 HOH B 5 405 80 HOH HOH . 
AB 6 HOH B 6 406 1 HOH HOH . 
AB 6 HOH B 7 407 37 HOH HOH . 
AB 6 HOH B 8 408 71 HOH HOH . 
AB 6 HOH B 9 409 22 HOH HOH . 
AB 6 HOH B 10 410 23 HOH HOH . 
AB 6 HOH B 11 411 32 HOH HOH . 
AB 6 HOH B 12 412 8 HOH HOH . 
AB 6 HOH B 13 413 72 HOH HOH . 
AB 6 HOH B 14 414 57 HOH HOH . 
AB 6 HOH B 15 415 48 HOH HOH . 
AB 6 HOH B 16 416 64 HOH HOH . 
AB 6 HOH B 17 417 77 HOH HOH . 
AB 6 HOH B 18 418 58 HOH HOH . 
AB 6 HOH B 19 419 87 HOH HOH . 
BB 6 HOH C 1 401 88 HOH HOH . 
BB 6 HOH C 2 402 89 HOH HOH . 
BB 6 HOH C 3 403 73 HOH HOH . 
BB 6 HOH C 4 404 17 HOH HOH . 
BB 6 HOH C 5 405 38 HOH HOH . 
BB 6 HOH C 6 406 49 HOH HOH . 
BB 6 HOH C 7 407 81 HOH HOH . 
BB 6 HOH C 8 408 50 HOH HOH . 
BB 6 HOH C 9 409 5 HOH HOH . 
BB 6 HOH C 10 410 24 HOH HOH . 
BB 6 HOH C 11 411 33 HOH HOH . 
BB 6 HOH C 12 412 9 HOH HOH . 
BB 6 HOH C 13 413 30 HOH HOH . 
BB 6 HOH C 14 414 2 HOH HOH . 
BB 6 HOH C 15 415 41 HOH HOH . 
BB 6 HOH C 16 416 66 HOH HOH . 
BB 6 HOH C 17 417 63 HOH HOH . 
BB 6 HOH C 18 418 78 HOH HOH . 
BB 6 HOH C 19 419 59 HOH HOH . 
BB 6 HOH C 20 420 79 HOH HOH . 
BB 6 HOH C 21 421 65 HOH HOH . 
BB 6 HOH C 22 422 90 HOH HOH . 
CB 6 HOH D 1 401 91 HOH HOH . 
CB 6 HOH D 2 402 92 HOH HOH . 
CB 6 HOH D 3 403 68 HOH HOH . 
CB 6 HOH D 4 404 39 HOH HOH . 
CB 6 HOH D 5 405 18 HOH HOH . 
CB 6 HOH D 6 406 10 HOH HOH . 
CB 6 HOH D 7 407 51 HOH HOH . 
CB 6 HOH D 8 408 42 HOH HOH . 
CB 6 HOH D 9 409 13 HOH HOH . 
CB 6 HOH D 10 410 25 HOH HOH . 
CB 6 HOH D 11 411 82 HOH HOH . 
CB 6 HOH D 12 412 34 HOH HOH . 
CB 6 HOH D 13 413 74 HOH HOH . 
CB 6 HOH D 14 414 19 HOH HOH . 
CB 6 HOH D 15 415 28 HOH HOH . 
CB 6 HOH D 16 416 43 HOH HOH . 
CB 6 HOH D 17 417 60 HOH HOH . 
CB 6 HOH D 18 418 93 HOH HOH . 
DB 6 HOH E 1 401 94 HOH HOH . 
DB 6 HOH E 2 402 96 HOH HOH . 
DB 6 HOH E 3 403 11 HOH HOH . 
DB 6 HOH E 4 404 14 HOH HOH . 
DB 6 HOH E 5 405 44 HOH HOH . 
DB 6 HOH E 6 406 35 HOH HOH . 
DB 6 HOH E 7 407 70 HOH HOH . 
DB 6 HOH E 8 408 40 HOH HOH . 
DB 6 HOH E 9 409 75 HOH HOH . 
DB 6 HOH E 10 410 29 HOH HOH . 
DB 6 HOH E 11 411 26 HOH HOH . 
DB 6 HOH E 12 412 3 HOH HOH . 
DB 6 HOH E 13 413 67 HOH HOH . 
DB 6 HOH E 14 414 20 HOH HOH . 
DB 6 HOH E 15 415 83 HOH HOH . 
DB 6 HOH E 16 416 21 HOH HOH . 
DB 6 HOH E 17 417 56 HOH HOH . 
DB 6 HOH E 18 418 76 HOH HOH . 
DB 6 HOH E 19 419 45 HOH HOH . 
DB 6 HOH E 20 420 61 HOH HOH . 
DB 6 HOH E 21 421 95 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         XA 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -36.595 
_atom_site.Cartn_y               13.449 
_atom_site.Cartn_z               -11.881 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        70.75 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           309 
_atom_site.auth_asym_id          E 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#