data_6RF0
#
_model_server_result.job_id            STst2gZ4NxNiDTQ9zc05RA 
_model_server_result.datetime_utc      '2024-11-16 08:17:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rf0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":301}' 
#
_entry.id    6RF0 
#
_exptl.entry_id    6RF0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RF0 
_cell.length_a            128.184 
_cell.length_b            239.719 
_cell.length_c            131.909 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RF0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 I N N 
? 2 K N N 
? 2 Q N N 
? 2 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 255 A LYS 255 1_555 J C15 RET . A RET 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? 
covale ? covale2 B NZ LYS 255 B LYS 255 1_555 P C15 RET . B RET 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale3 C NZ LYS 255 C LYS 255 1_555 U C15 RET . C RET 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale4 D NZ LYS 255 D LYS 255 1_555 Z C15 RET . D RET 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale5 E NZ LYS 255 E LYS 255 1_555 DA C15 RET . E RET 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
metalc ? metalc2 A O THR 83 A THR 83 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc3 A O PHE 86 A PHE 86 1_555 F NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc4 A OD1 ASP 102 A ASP 102 1_555 I NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? 
metalc ? metalc5 A OD2 ASP 102 A ASP 102 1_555 I NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc6 F NA NA . A NA 301 1_555 B OD1 ASP 102 B ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc7 F NA NA . A NA 301 1_555 B OD2 ASP 102 B ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? 
metalc ? metalc8 I NA NA . A NA 304 1_555 E OH TYR 25 E TYR 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? 
metalc ? metalc9 I NA NA . A NA 304 1_555 E O THR 83 E THR 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc10 I NA NA . A NA 304 1_555 E O PHE 86 E PHE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc11 B OH TYR 25 B TYR 25 1_555 K NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? 
metalc ? metalc12 B O THR 83 B THR 83 1_555 K NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc13 B O PHE 86 B PHE 86 1_555 K NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc14 K NA NA . B NA 301 1_555 C OD1 ASP 102 C ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? 
metalc ? metalc15 K NA NA . B NA 301 1_555 C OD2 ASP 102 C ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc16 C OH TYR 25 C TYR 25 1_555 Q NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc17 C O THR 83 C THR 83 1_555 Q NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc18 C O PHE 86 C PHE 86 1_555 Q NA NA . C NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc19 Q NA NA . C NA 301 1_555 D OD1 ASP 102 D ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? 
metalc ? metalc20 Q NA NA . C NA 301 1_555 D OD2 ASP 102 D ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? 
metalc ? metalc21 D OH TYR 25 D TYR 25 1_555 V NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? 
metalc ? metalc22 D O THR 83 D THR 83 1_555 V NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc23 D O PHE 86 D PHE 86 1_555 V NA NA . D NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc24 V NA NA . D NA 301 1_555 E OD1 ASP 102 E ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? 
metalc ? metalc25 V NA NA . D NA 301 1_555 E OD2 ASP 102 E ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6RF0 
_atom_sites.fract_transf_matrix[1][1]    0.007801 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004172 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007581 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 NA A 1 301 301 NA NA . 
G 3 OLC A 1 302 401 OLC OLC . 
H 4 LFA A 1 303 501 LFA LFA . 
I 2 NA A 1 304 301 NA NA . 
J 5 RET A 1 305 255 RET LYR . 
K 2 NA B 1 301 301 NA NA . 
L 4 LFA B 1 302 303 LFA LFA . 
M 4 LFA B 1 303 304 LFA LFA . 
N 3 OLC B 1 304 401 OLC OLC . 
O 4 LFA B 1 305 501 LFA LFA . 
P 5 RET B 1 306 255 RET LYR . 
Q 2 NA C 1 301 301 NA NA . 
R 4 LFA C 1 302 303 LFA LFA . 
S 3 OLC C 1 303 401 OLC OLC . 
T 4 LFA C 1 304 501 LFA LFA . 
U 5 RET C 1 305 255 RET LYR . 
V 2 NA D 1 301 301 NA NA . 
W 4 LFA D 1 302 303 LFA LFA . 
X 3 OLC D 1 303 401 OLC OLC . 
Y 4 LFA D 1 304 501 LFA LFA . 
Z 5 RET D 1 305 255 RET LYR . 
AA 4 LFA E 1 301 302 LFA LFA . 
BA 3 OLC E 1 302 401 OLC OLC . 
CA 4 LFA E 1 303 601 LFA LFA . 
DA 5 RET E 1 304 255 RET LYR . 
EA 6 HOH A 1 401 9 HOH HOH . 
EA 6 HOH A 2 402 28 HOH HOH . 
EA 6 HOH A 3 403 3 HOH HOH . 
EA 6 HOH A 4 404 32 HOH HOH . 
EA 6 HOH A 5 405 23 HOH HOH . 
EA 6 HOH A 6 406 10 HOH HOH . 
EA 6 HOH A 7 407 2 HOH HOH . 
EA 6 HOH A 8 408 35 HOH HOH . 
EA 6 HOH A 9 409 41 HOH HOH . 
FA 6 HOH B 1 401 33 HOH HOH . 
FA 6 HOH B 2 402 21 HOH HOH . 
FA 6 HOH B 3 403 42 HOH HOH . 
FA 6 HOH B 4 404 12 HOH HOH . 
FA 6 HOH B 5 405 36 HOH HOH . 
FA 6 HOH B 6 406 24 HOH HOH . 
GA 6 HOH C 1 401 29 HOH HOH . 
GA 6 HOH C 2 402 14 HOH HOH . 
GA 6 HOH C 3 403 13 HOH HOH . 
GA 6 HOH C 4 404 22 HOH HOH . 
GA 6 HOH C 5 405 8 HOH HOH . 
GA 6 HOH C 6 406 16 HOH HOH . 
GA 6 HOH C 7 407 15 HOH HOH . 
GA 6 HOH C 8 408 34 HOH HOH . 
GA 6 HOH C 9 409 27 HOH HOH . 
GA 6 HOH C 10 410 37 HOH HOH . 
HA 6 HOH D 1 401 30 HOH HOH . 
HA 6 HOH D 2 402 7 HOH HOH . 
HA 6 HOH D 3 403 11 HOH HOH . 
HA 6 HOH D 4 404 19 HOH HOH . 
HA 6 HOH D 5 405 38 HOH HOH . 
HA 6 HOH D 6 406 39 HOH HOH . 
HA 6 HOH D 7 407 6 HOH HOH . 
HA 6 HOH D 8 408 40 HOH HOH . 
HA 6 HOH D 9 409 17 HOH HOH . 
IA 6 HOH E 1 401 31 HOH HOH . 
IA 6 HOH E 2 402 20 HOH HOH . 
IA 6 HOH E 3 403 18 HOH HOH . 
IA 6 HOH E 4 404 25 HOH HOH . 
IA 6 HOH E 5 405 5 HOH HOH . 
IA 6 HOH E 6 406 26 HOH HOH . 
IA 6 HOH E 7 407 1 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         Q 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -27.605 
_atom_site.Cartn_y               -13.509 
_atom_site.Cartn_z               -11.696 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        32.39 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           1 
#