data_6RF6
#
_model_server_result.job_id            YQvItiqn7khnqDvHlqPvtg 
_model_server_result.datetime_utc      '2025-03-01 08:26:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":312}' 
#
_entry.id    6RF6 
#
_exptl.entry_id    6RF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RF6 
_cell.length_a            40.411 
_cell.length_b            82.319 
_cell.length_c            233.35 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 255 A LYS 255 1_555 W C15 RET . A RET 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 M NA NA . A NA 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc2 A O THR 83 A THR 83 1_555 M NA NA . A NA 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc3 A O PHE 86 A PHE 86 1_555 M NA NA . A NA 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc4 M NA NA . A NA 312 1_555 X O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc5 M NA NA . A NA 312 1_555 X O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc6 M NA NA . A NA 312 1_555 X O HOH . A HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6RF6 
_atom_sites.fract_transf_matrix[1][1]    0.024746 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012148 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004285 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LFA A 1 301 301 LFA LFA . 
C 2 LFA A 1 302 401 LFA LFA . 
D 2 LFA A 1 303 501 LFA LFA . 
E 2 LFA A 1 304 601 LFA LFA . 
F 2 LFA A 1 305 701 LFA LFA . 
G 2 LFA A 1 306 801 LFA LFA . 
H 2 LFA A 1 307 901 LFA LFA . 
I 2 LFA A 1 308 1001 LFA LFA . 
J 2 LFA A 1 309 1101 LFA LFA . 
K 2 LFA A 1 310 1201 LFA LFA . 
L 2 LFA A 1 311 1301 LFA LFA . 
M 3 NA A 1 312 1 NA NA . 
N 2 LFA A 1 313 1 LFA LFA . 
O 2 LFA A 1 314 2 LFA LFA . 
P 2 LFA A 1 315 3 LFA LFA . 
Q 2 LFA A 1 316 4 LFA LFA . 
R 2 LFA A 1 317 5 LFA LFA . 
S 2 LFA A 1 318 6 LFA LFA . 
T 2 LFA A 1 319 7 LFA LFA . 
U 2 LFA A 1 320 8 LFA LFA . 
V 2 LFA A 1 321 9 LFA LFA . 
W 4 RET A 1 322 255 RET LYR . 
X 5 HOH A 1 401 69 HOH HOH . 
X 5 HOH A 2 402 25 HOH HOH . 
X 5 HOH A 3 403 40 HOH HOH . 
X 5 HOH A 4 404 24 HOH HOH . 
X 5 HOH A 5 405 79 HOH HOH . 
X 5 HOH A 6 406 59 HOH HOH . 
X 5 HOH A 7 407 83 HOH HOH . 
X 5 HOH A 8 408 33 HOH HOH . 
X 5 HOH A 9 409 82 HOH HOH . 
X 5 HOH A 10 410 1 HOH HOH . 
X 5 HOH A 11 411 81 HOH HOH . 
X 5 HOH A 12 412 72 HOH HOH . 
X 5 HOH A 13 413 15 HOH HOH . 
X 5 HOH A 14 414 39 HOH HOH . 
X 5 HOH A 15 415 30 HOH HOH . 
X 5 HOH A 16 416 46 HOH HOH . 
X 5 HOH A 17 417 50 HOH HOH . 
X 5 HOH A 18 418 52 HOH HOH . 
X 5 HOH A 19 419 42 HOH HOH . 
X 5 HOH A 20 420 16 HOH HOH . 
X 5 HOH A 21 421 58 HOH HOH . 
X 5 HOH A 22 422 19 HOH HOH . 
X 5 HOH A 23 423 4 HOH HOH . 
X 5 HOH A 24 424 84 HOH HOH . 
X 5 HOH A 25 425 78 HOH HOH . 
X 5 HOH A 26 426 47 HOH HOH . 
X 5 HOH A 27 427 12 HOH HOH . 
X 5 HOH A 28 428 20 HOH HOH . 
X 5 HOH A 29 429 43 HOH HOH . 
X 5 HOH A 30 430 45 HOH HOH . 
X 5 HOH A 31 431 73 HOH HOH . 
X 5 HOH A 32 432 27 HOH HOH . 
X 5 HOH A 33 433 8 HOH HOH . 
X 5 HOH A 34 434 28 HOH HOH . 
X 5 HOH A 35 435 7 HOH HOH . 
X 5 HOH A 36 436 68 HOH HOH . 
X 5 HOH A 37 437 2 HOH HOH . 
X 5 HOH A 38 438 5 HOH HOH . 
X 5 HOH A 39 439 13 HOH HOH . 
X 5 HOH A 40 440 51 HOH HOH . 
X 5 HOH A 41 441 18 HOH HOH . 
X 5 HOH A 42 442 34 HOH HOH . 
X 5 HOH A 43 443 35 HOH HOH . 
X 5 HOH A 44 444 48 HOH HOH . 
X 5 HOH A 45 445 21 HOH HOH . 
X 5 HOH A 46 446 64 HOH HOH . 
X 5 HOH A 47 447 14 HOH HOH . 
X 5 HOH A 48 448 57 HOH HOH . 
X 5 HOH A 49 449 31 HOH HOH . 
X 5 HOH A 50 450 44 HOH HOH . 
X 5 HOH A 51 451 55 HOH HOH . 
X 5 HOH A 52 452 32 HOH HOH . 
X 5 HOH A 53 453 61 HOH HOH . 
X 5 HOH A 54 454 76 HOH HOH . 
X 5 HOH A 55 455 65 HOH HOH . 
X 5 HOH A 56 456 56 HOH HOH . 
X 5 HOH A 57 457 86 HOH HOH . 
X 5 HOH A 58 458 91 HOH HOH . 
X 5 HOH A 59 459 74 HOH HOH . 
X 5 HOH A 60 460 90 HOH HOH . 
X 5 HOH A 61 461 37 HOH HOH . 
X 5 HOH A 62 462 66 HOH HOH . 
X 5 HOH A 63 463 23 HOH HOH . 
X 5 HOH A 64 464 93 HOH HOH . 
X 5 HOH A 65 465 77 HOH HOH . 
X 5 HOH A 66 466 26 HOH HOH . 
X 5 HOH A 67 467 38 HOH HOH . 
X 5 HOH A 68 468 29 HOH HOH . 
X 5 HOH A 69 469 70 HOH HOH . 
X 5 HOH A 70 470 36 HOH HOH . 
X 5 HOH A 71 471 60 HOH HOH . 
X 5 HOH A 72 472 49 HOH HOH . 
X 5 HOH A 73 473 6 HOH HOH . 
X 5 HOH A 74 474 54 HOH HOH . 
X 5 HOH A 75 475 62 HOH HOH . 
X 5 HOH A 76 476 10 HOH HOH . 
X 5 HOH A 77 477 17 HOH HOH . 
X 5 HOH A 78 478 67 HOH HOH . 
X 5 HOH A 79 479 85 HOH HOH . 
X 5 HOH A 80 480 3 HOH HOH . 
X 5 HOH A 81 481 63 HOH HOH . 
X 5 HOH A 82 482 53 HOH HOH . 
X 5 HOH A 83 483 92 HOH HOH . 
X 5 HOH A 84 484 87 HOH HOH . 
X 5 HOH A 85 485 11 HOH HOH . 
X 5 HOH A 86 486 41 HOH HOH . 
X 5 HOH A 87 487 9 HOH HOH . 
X 5 HOH A 88 488 71 HOH HOH . 
X 5 HOH A 89 489 22 HOH HOH . 
X 5 HOH A 90 490 75 HOH HOH . 
X 5 HOH A 91 491 88 HOH HOH . 
X 5 HOH A 92 492 80 HOH HOH . 
X 5 HOH A 93 493 89 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               14.618 
_atom_site.Cartn_y               32.736 
_atom_site.Cartn_z               7.727 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        44.11 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           312 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#