data_6RF6
#
_model_server_result.job_id            zIto_m5cueZn7KEc8OzcHw 
_model_server_result.datetime_utc      '2024-11-05 09:31:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rf6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":322}' 
#
_entry.id    6RF6 
#
_exptl.entry_id    6RF6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RF6 
_cell.length_a            40.411 
_cell.length_b            82.319 
_cell.length_c            233.35 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RF6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             W 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 255 A LYS 255 1_555 W C15 RET . A RET 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 M NA NA . A NA 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc2 A O THR 83 A THR 83 1_555 M NA NA . A NA 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc3 A O PHE 86 A PHE 86 1_555 M NA NA . A NA 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc4 M NA NA . A NA 312 1_555 X O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc5 M NA NA . A NA 312 1_555 X O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc6 M NA NA . A NA 312 1_555 X O HOH . A HOH 481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 325 n n 
C1 C6 RET sing 326 n n 
C1 C16 RET sing 327 n n 
C1 C17 RET sing 328 n n 
C2 C3 RET sing 329 n n 
C2 H21 RET sing 330 n n 
C2 H22 RET sing 331 n n 
C3 C4 RET sing 332 n n 
C3 H31 RET sing 333 n n 
C3 H32 RET sing 334 n n 
C4 C5 RET sing 335 n n 
C4 H41 RET sing 336 n n 
C4 H42 RET sing 337 n n 
C5 C6 RET doub 338 n n 
C5 C18 RET sing 339 n n 
C6 C7 RET sing 340 n n 
C7 C8 RET doub 341 e n 
C7 H7 RET sing 342 n n 
C8 C9 RET sing 343 n n 
C8 H8 RET sing 344 n n 
C9 C10 RET doub 345 e n 
C9 C19 RET sing 346 n n 
C10 C11 RET sing 347 n n 
C10 H10 RET sing 348 n n 
C11 C12 RET doub 349 e n 
C11 H11 RET sing 350 n n 
C12 C13 RET sing 351 n n 
C12 H12 RET sing 352 n n 
C13 C14 RET doub 353 e n 
C13 C20 RET sing 354 n n 
C14 C15 RET sing 355 n n 
C14 H14 RET sing 356 n n 
C15 O1 RET doub 357 n n 
C15 H15 RET sing 358 n n 
C16 H161 RET sing 359 n n 
C16 H162 RET sing 360 n n 
C16 H163 RET sing 361 n n 
C17 H171 RET sing 362 n n 
C17 H172 RET sing 363 n n 
C17 H173 RET sing 364 n n 
C18 H181 RET sing 365 n n 
C18 H182 RET sing 366 n n 
C18 H183 RET sing 367 n n 
C19 H191 RET sing 368 n n 
C19 H192 RET sing 369 n n 
C19 H193 RET sing 370 n n 
C20 H201 RET sing 371 n n 
C20 H202 RET sing 372 n n 
C20 H203 RET sing 373 n n 
#
_atom_sites.entry_id                     6RF6 
_atom_sites.fract_transf_matrix[1][1]    0.024746 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012148 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004285 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LFA A 1 301 301 LFA LFA . 
C 2 LFA A 1 302 401 LFA LFA . 
D 2 LFA A 1 303 501 LFA LFA . 
E 2 LFA A 1 304 601 LFA LFA . 
F 2 LFA A 1 305 701 LFA LFA . 
G 2 LFA A 1 306 801 LFA LFA . 
H 2 LFA A 1 307 901 LFA LFA . 
I 2 LFA A 1 308 1001 LFA LFA . 
J 2 LFA A 1 309 1101 LFA LFA . 
K 2 LFA A 1 310 1201 LFA LFA . 
L 2 LFA A 1 311 1301 LFA LFA . 
M 3 NA A 1 312 1 NA NA . 
N 2 LFA A 1 313 1 LFA LFA . 
O 2 LFA A 1 314 2 LFA LFA . 
P 2 LFA A 1 315 3 LFA LFA . 
Q 2 LFA A 1 316 4 LFA LFA . 
R 2 LFA A 1 317 5 LFA LFA . 
S 2 LFA A 1 318 6 LFA LFA . 
T 2 LFA A 1 319 7 LFA LFA . 
U 2 LFA A 1 320 8 LFA LFA . 
V 2 LFA A 1 321 9 LFA LFA . 
W 4 RET A 1 322 255 RET LYR . 
X 5 HOH A 1 401 69 HOH HOH . 
X 5 HOH A 2 402 25 HOH HOH . 
X 5 HOH A 3 403 40 HOH HOH . 
X 5 HOH A 4 404 24 HOH HOH . 
X 5 HOH A 5 405 79 HOH HOH . 
X 5 HOH A 6 406 59 HOH HOH . 
X 5 HOH A 7 407 83 HOH HOH . 
X 5 HOH A 8 408 33 HOH HOH . 
X 5 HOH A 9 409 82 HOH HOH . 
X 5 HOH A 10 410 1 HOH HOH . 
X 5 HOH A 11 411 81 HOH HOH . 
X 5 HOH A 12 412 72 HOH HOH . 
X 5 HOH A 13 413 15 HOH HOH . 
X 5 HOH A 14 414 39 HOH HOH . 
X 5 HOH A 15 415 30 HOH HOH . 
X 5 HOH A 16 416 46 HOH HOH . 
X 5 HOH A 17 417 50 HOH HOH . 
X 5 HOH A 18 418 52 HOH HOH . 
X 5 HOH A 19 419 42 HOH HOH . 
X 5 HOH A 20 420 16 HOH HOH . 
X 5 HOH A 21 421 58 HOH HOH . 
X 5 HOH A 22 422 19 HOH HOH . 
X 5 HOH A 23 423 4 HOH HOH . 
X 5 HOH A 24 424 84 HOH HOH . 
X 5 HOH A 25 425 78 HOH HOH . 
X 5 HOH A 26 426 47 HOH HOH . 
X 5 HOH A 27 427 12 HOH HOH . 
X 5 HOH A 28 428 20 HOH HOH . 
X 5 HOH A 29 429 43 HOH HOH . 
X 5 HOH A 30 430 45 HOH HOH . 
X 5 HOH A 31 431 73 HOH HOH . 
X 5 HOH A 32 432 27 HOH HOH . 
X 5 HOH A 33 433 8 HOH HOH . 
X 5 HOH A 34 434 28 HOH HOH . 
X 5 HOH A 35 435 7 HOH HOH . 
X 5 HOH A 36 436 68 HOH HOH . 
X 5 HOH A 37 437 2 HOH HOH . 
X 5 HOH A 38 438 5 HOH HOH . 
X 5 HOH A 39 439 13 HOH HOH . 
X 5 HOH A 40 440 51 HOH HOH . 
X 5 HOH A 41 441 18 HOH HOH . 
X 5 HOH A 42 442 34 HOH HOH . 
X 5 HOH A 43 443 35 HOH HOH . 
X 5 HOH A 44 444 48 HOH HOH . 
X 5 HOH A 45 445 21 HOH HOH . 
X 5 HOH A 46 446 64 HOH HOH . 
X 5 HOH A 47 447 14 HOH HOH . 
X 5 HOH A 48 448 57 HOH HOH . 
X 5 HOH A 49 449 31 HOH HOH . 
X 5 HOH A 50 450 44 HOH HOH . 
X 5 HOH A 51 451 55 HOH HOH . 
X 5 HOH A 52 452 32 HOH HOH . 
X 5 HOH A 53 453 61 HOH HOH . 
X 5 HOH A 54 454 76 HOH HOH . 
X 5 HOH A 55 455 65 HOH HOH . 
X 5 HOH A 56 456 56 HOH HOH . 
X 5 HOH A 57 457 86 HOH HOH . 
X 5 HOH A 58 458 91 HOH HOH . 
X 5 HOH A 59 459 74 HOH HOH . 
X 5 HOH A 60 460 90 HOH HOH . 
X 5 HOH A 61 461 37 HOH HOH . 
X 5 HOH A 62 462 66 HOH HOH . 
X 5 HOH A 63 463 23 HOH HOH . 
X 5 HOH A 64 464 93 HOH HOH . 
X 5 HOH A 65 465 77 HOH HOH . 
X 5 HOH A 66 466 26 HOH HOH . 
X 5 HOH A 67 467 38 HOH HOH . 
X 5 HOH A 68 468 29 HOH HOH . 
X 5 HOH A 69 469 70 HOH HOH . 
X 5 HOH A 70 470 36 HOH HOH . 
X 5 HOH A 71 471 60 HOH HOH . 
X 5 HOH A 72 472 49 HOH HOH . 
X 5 HOH A 73 473 6 HOH HOH . 
X 5 HOH A 74 474 54 HOH HOH . 
X 5 HOH A 75 475 62 HOH HOH . 
X 5 HOH A 76 476 10 HOH HOH . 
X 5 HOH A 77 477 17 HOH HOH . 
X 5 HOH A 78 478 67 HOH HOH . 
X 5 HOH A 79 479 85 HOH HOH . 
X 5 HOH A 80 480 3 HOH HOH . 
X 5 HOH A 81 481 63 HOH HOH . 
X 5 HOH A 82 482 53 HOH HOH . 
X 5 HOH A 83 483 92 HOH HOH . 
X 5 HOH A 84 484 87 HOH HOH . 
X 5 HOH A 85 485 11 HOH HOH . 
X 5 HOH A 86 486 41 HOH HOH . 
X 5 HOH A 87 487 9 HOH HOH . 
X 5 HOH A 88 488 71 HOH HOH . 
X 5 HOH A 89 489 22 HOH HOH . 
X 5 HOH A 90 490 75 HOH HOH . 
X 5 HOH A 91 491 88 HOH HOH . 
X 5 HOH A 92 492 80 HOH HOH . 
X 5 HOH A 93 493 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . W 4 22.778 15.485 27.237 1 32.84 ? C1 RET 322 A 1 
HETATM 2 C C2 RET . . . W 4 23.264 14.38 26.296 1 34.35 ? C2 RET 322 A 1 
HETATM 3 C C3 RET . . . W 4 22.401 13.142 26.365 1 34.58 ? C3 RET 322 A 1 
HETATM 4 C C4 RET . . . W 4 22.521 12.54 27.742 1 33.16 ? C4 RET 322 A 1 
HETATM 5 C C5 RET . . . W 4 22.281 13.586 28.801 1 31.57 ? C5 RET 322 A 1 
HETATM 6 C C6 RET . . . W 4 22.331 14.918 28.579 1 30.12 ? C6 RET 322 A 1 
HETATM 7 C C7 RET . . . W 4 21.852 15.806 29.666 1 27.57 ? C7 RET 322 A 1 
HETATM 8 C C8 RET . . . W 4 21.802 17.144 29.572 1 29.24 ? C8 RET 322 A 1 
HETATM 9 C C9 RET . . . W 4 21.278 17.991 30.681 1 28.96 ? C9 RET 322 A 1 
HETATM 10 C C10 RET . . . W 4 21.305 19.333 30.528 1 28.8 ? C10 RET 322 A 1 
HETATM 11 C C11 RET . . . W 4 20.78 20.276 31.498 1 27.56 ? C11 RET 322 A 1 
HETATM 12 C C12 RET . . . W 4 20.757 21.563 31.153 1 29.48 ? C12 RET 322 A 1 
HETATM 13 C C13 RET . . . W 4 20.159 22.624 31.978 1 31.74 ? C13 RET 322 A 1 
HETATM 14 C C14 RET . . . W 4 20.075 23.845 31.414 1 34.31 ? C14 RET 322 A 1 
HETATM 15 C C15 RET . . . W 4 19.445 25.022 32.103 1 34.65 ? C15 RET 322 A 1 
HETATM 16 C C16 RET . . . W 4 23.918 16.485 27.37 1 33.37 ? C16 RET 322 A 1 
HETATM 17 C C17 RET . . . W 4 21.595 16.21 26.593 1 30.97 ? C17 RET 322 A 1 
HETATM 18 C C18 RET . . . W 4 21.948 13.03 30.152 1 34.7 ? C18 RET 322 A 1 
HETATM 19 C C19 RET . . . W 4 20.696 17.368 31.918 1 29.01 ? C19 RET 322 A 1 
HETATM 20 C C20 RET . . . W 4 19.589 22.345 33.336 1 29.67 ? C20 RET 322 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#