data_6RF9 # _model_server_result.job_id Zal13jFjKIneQLYbm3_QBg _model_server_result.datetime_utc '2024-11-16 08:40:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rf9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6RF9 # _exptl.entry_id 6RF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RF9 _cell.length_a 40.472 _cell.length_b 81.851 _cell.length_c 233.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 V N N ? 2 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 255 A LYS 255 1_555 Y C15 RET . A RET 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 X NA NA . A NA 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc2 A O THR 83 A THR 83 1_555 X NA NA . A NA 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc3 A O PHE 86 A PHE 86 1_555 X NA NA . A NA 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 X NA NA . A NA 323 1_555 Z O HOH . A HOH 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc5 X NA NA . A NA 323 1_555 Z O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc6 X NA NA . A NA 323 1_555 Z O HOH . A HOH 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 194 n n C1 H11 LFA sing 195 n n C1 H12 LFA sing 196 n n C1 H13 LFA sing 197 n n C2 C3 LFA sing 198 n n C2 H21 LFA sing 199 n n C2 H22 LFA sing 200 n n C3 C4 LFA sing 201 n n C3 H31 LFA sing 202 n n C3 H32 LFA sing 203 n n C4 C5 LFA sing 204 n n C4 H41 LFA sing 205 n n C4 H42 LFA sing 206 n n C5 C6 LFA sing 207 n n C5 H51 LFA sing 208 n n C5 H52 LFA sing 209 n n C6 C7 LFA sing 210 n n C6 H61 LFA sing 211 n n C6 H62 LFA sing 212 n n C7 C8 LFA sing 213 n n C7 H71 LFA sing 214 n n C7 H72 LFA sing 215 n n C8 C9 LFA sing 216 n n C8 H81 LFA sing 217 n n C8 H82 LFA sing 218 n n C9 C10 LFA sing 219 n n C9 H91 LFA sing 220 n n C9 H92 LFA sing 221 n n C10 C11 LFA sing 222 n n C10 H101 LFA sing 223 n n C10 H102 LFA sing 224 n n C11 C12 LFA sing 225 n n C11 H111 LFA sing 226 n n C11 H112 LFA sing 227 n n C12 C13 LFA sing 228 n n C12 H121 LFA sing 229 n n C12 H122 LFA sing 230 n n C13 C14 LFA sing 231 n n C13 H131 LFA sing 232 n n C13 H132 LFA sing 233 n n C14 C15 LFA sing 234 n n C14 H141 LFA sing 235 n n C14 H142 LFA sing 236 n n C15 C16 LFA sing 237 n n C15 H151 LFA sing 238 n n C15 H152 LFA sing 239 n n C16 C17 LFA sing 240 n n C16 H161 LFA sing 241 n n C16 H162 LFA sing 242 n n C17 C18 LFA sing 243 n n C17 H171 LFA sing 244 n n C17 H172 LFA sing 245 n n C18 C19 LFA sing 246 n n C18 H181 LFA sing 247 n n C18 H182 LFA sing 248 n n C19 C20 LFA sing 249 n n C19 H191 LFA sing 250 n n C19 H192 LFA sing 251 n n C20 H201 LFA sing 252 n n C20 H202 LFA sing 253 n n C20 H203 LFA sing 254 n n # _atom_sites.entry_id 6RF9 _atom_sites.fract_transf_matrix[1][1] 0.024708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA A 1 301 301 LFA LFA . C 2 LFA A 1 302 401 LFA LFA . D 2 LFA A 1 303 501 LFA LFA . E 2 LFA A 1 304 601 LFA LFA . F 2 LFA A 1 305 701 LFA LFA . G 2 LFA A 1 306 801 LFA LFA . H 2 LFA A 1 307 901 LFA LFA . I 2 LFA A 1 308 1001 LFA LFA . J 2 LFA A 1 309 1101 LFA LFA . K 3 GOL A 1 310 1201 GOL GOL . L 2 LFA A 1 311 1301 LFA LFA . M 2 LFA A 1 312 1401 LFA LFA . N 2 LFA A 1 313 1501 LFA LFA . O 2 LFA A 1 314 1601 LFA LFA . P 3 GOL A 1 315 1701 GOL GOL . Q 3 GOL A 1 316 1801 GOL GOL . R 2 LFA A 1 317 1901 LFA LFA . S 2 LFA A 1 318 2001 LFA LFA . T 2 LFA A 1 319 2101 LFA LFA . U 3 GOL A 1 320 2201 GOL GOL . V 2 LFA A 1 321 2301 LFA LFA . W 2 LFA A 1 322 2401 LFA LFA . X 4 NA A 1 323 1 NA NA . Y 5 RET A 1 324 255 RET LYR . Z 6 HOH A 1 401 29 HOH HOH . Z 6 HOH A 2 402 40 HOH HOH . Z 6 HOH A 3 403 73 HOH HOH . Z 6 HOH A 4 404 44 HOH HOH . Z 6 HOH A 5 405 46 HOH HOH . Z 6 HOH A 6 406 37 HOH HOH . Z 6 HOH A 7 407 51 HOH HOH . Z 6 HOH A 8 408 47 HOH HOH . Z 6 HOH A 9 409 55 HOH HOH . Z 6 HOH A 10 410 5 HOH HOH . Z 6 HOH A 11 411 34 HOH HOH . Z 6 HOH A 12 412 68 HOH HOH . Z 6 HOH A 13 413 43 HOH HOH . Z 6 HOH A 14 414 90 HOH HOH . Z 6 HOH A 15 415 14 HOH HOH . Z 6 HOH A 16 416 92 HOH HOH . Z 6 HOH A 17 417 52 HOH HOH . Z 6 HOH A 18 418 18 HOH HOH . Z 6 HOH A 19 419 31 HOH HOH . Z 6 HOH A 20 420 63 HOH HOH . Z 6 HOH A 21 421 22 HOH HOH . Z 6 HOH A 22 422 49 HOH HOH . Z 6 HOH A 23 423 96 HOH HOH . Z 6 HOH A 24 424 39 HOH HOH . Z 6 HOH A 25 425 12 HOH HOH . Z 6 HOH A 26 426 21 HOH HOH . Z 6 HOH A 27 427 8 HOH HOH . Z 6 HOH A 28 428 19 HOH HOH . Z 6 HOH A 29 429 2 HOH HOH . Z 6 HOH A 30 430 48 HOH HOH . Z 6 HOH A 31 431 50 HOH HOH . Z 6 HOH A 32 432 1 HOH HOH . Z 6 HOH A 33 433 42 HOH HOH . Z 6 HOH A 34 434 9 HOH HOH . Z 6 HOH A 35 435 89 HOH HOH . Z 6 HOH A 36 436 98 HOH HOH . Z 6 HOH A 37 437 60 HOH HOH . Z 6 HOH A 38 438 91 HOH HOH . Z 6 HOH A 39 439 53 HOH HOH . Z 6 HOH A 40 440 13 HOH HOH . Z 6 HOH A 41 441 24 HOH HOH . Z 6 HOH A 42 442 32 HOH HOH . Z 6 HOH A 43 443 64 HOH HOH . Z 6 HOH A 44 444 25 HOH HOH . Z 6 HOH A 45 445 97 HOH HOH . Z 6 HOH A 46 446 17 HOH HOH . Z 6 HOH A 47 447 33 HOH HOH . Z 6 HOH A 48 448 30 HOH HOH . Z 6 HOH A 49 449 57 HOH HOH . Z 6 HOH A 50 450 38 HOH HOH . Z 6 HOH A 51 451 86 HOH HOH . Z 6 HOH A 52 452 85 HOH HOH . Z 6 HOH A 53 453 15 HOH HOH . Z 6 HOH A 54 454 69 HOH HOH . Z 6 HOH A 55 455 62 HOH HOH . Z 6 HOH A 56 456 11 HOH HOH . Z 6 HOH A 57 457 94 HOH HOH . Z 6 HOH A 58 458 76 HOH HOH . Z 6 HOH A 59 459 6 HOH HOH . Z 6 HOH A 60 460 77 HOH HOH . Z 6 HOH A 61 461 16 HOH HOH . Z 6 HOH A 62 462 10 HOH HOH . Z 6 HOH A 63 463 26 HOH HOH . Z 6 HOH A 64 464 79 HOH HOH . Z 6 HOH A 65 465 58 HOH HOH . Z 6 HOH A 66 466 67 HOH HOH . Z 6 HOH A 67 467 99 HOH HOH . Z 6 HOH A 68 468 54 HOH HOH . Z 6 HOH A 69 469 35 HOH HOH . Z 6 HOH A 70 470 72 HOH HOH . Z 6 HOH A 71 471 28 HOH HOH . Z 6 HOH A 72 472 23 HOH HOH . Z 6 HOH A 73 473 20 HOH HOH . Z 6 HOH A 74 474 78 HOH HOH . Z 6 HOH A 75 475 84 HOH HOH . Z 6 HOH A 76 476 4 HOH HOH . Z 6 HOH A 77 477 61 HOH HOH . Z 6 HOH A 78 478 80 HOH HOH . Z 6 HOH A 79 479 27 HOH HOH . Z 6 HOH A 80 480 88 HOH HOH . Z 6 HOH A 81 481 74 HOH HOH . Z 6 HOH A 82 482 41 HOH HOH . Z 6 HOH A 83 483 81 HOH HOH . Z 6 HOH A 84 484 95 HOH HOH . Z 6 HOH A 85 485 59 HOH HOH . Z 6 HOH A 86 486 7 HOH HOH . Z 6 HOH A 87 487 56 HOH HOH . Z 6 HOH A 88 488 75 HOH HOH . Z 6 HOH A 89 489 82 HOH HOH . Z 6 HOH A 90 490 36 HOH HOH . Z 6 HOH A 91 491 70 HOH HOH . Z 6 HOH A 92 492 71 HOH HOH . Z 6 HOH A 93 493 83 HOH HOH . Z 6 HOH A 94 494 87 HOH HOH . Z 6 HOH A 95 495 65 HOH HOH . Z 6 HOH A 96 496 93 HOH HOH . Z 6 HOH A 97 497 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 LFA . . . D 2 9.057 42.83 46.316 1 63.07 ? C10 LFA 303 A 1 HETATM 2 C C11 LFA . . . D 2 8.513 41.973 45.192 1 62.69 ? C11 LFA 303 A 1 HETATM 3 C C12 LFA . . . D 2 8.604 42.734 43.885 1 63.19 ? C12 LFA 303 A 1 HETATM 4 C C13 LFA . . . D 2 7.63 42.163 42.872 1 60.37 ? C13 LFA 303 A 1 HETATM 5 C C14 LFA . . . D 2 8.206 40.912 42.242 1 57.84 ? C14 LFA 303 A 1 HETATM 6 C C15 LFA . . . D 2 7.487 40.588 40.947 1 57.36 ? C15 LFA 303 A 1 HETATM 7 C C16 LFA . . . D 2 8.349 40.974 39.761 1 50.94 ? C16 LFA 303 A 1 HETATM 8 C C17 LFA . . . D 2 7.924 40.185 38.54 1 51.44 ? C17 LFA 303 A 1 HETATM 9 C C18 LFA . . . D 2 8.472 40.823 37.281 1 52.15 ? C18 LFA 303 A 1 HETATM 10 C C19 LFA . . . D 2 8.586 39.781 36.187 1 49.33 ? C19 LFA 303 A 1 HETATM 11 C C20 LFA . . . D 2 8.399 40.432 34.834 1 48.92 ? C20 LFA 303 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 11 #