data_6RF9 # _model_server_result.job_id WcshSar6OzNR6-IQxRrTxw _model_server_result.datetime_utc '2024-11-16 08:43:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rf9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":323}' # _entry.id 6RF9 # _exptl.entry_id 6RF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RF9 _cell.length_a 40.472 _cell.length_b 81.851 _cell.length_c 233.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 255 A LYS 255 1_555 Y C15 RET . A RET 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 X NA NA . A NA 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc2 A O THR 83 A THR 83 1_555 X NA NA . A NA 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc3 A O PHE 86 A PHE 86 1_555 X NA NA . A NA 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 X NA NA . A NA 323 1_555 Z O HOH . A HOH 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc5 X NA NA . A NA 323 1_555 Z O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc6 X NA NA . A NA 323 1_555 Z O HOH . A HOH 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RF9 _atom_sites.fract_transf_matrix[1][1] 0.024708 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA A 1 301 301 LFA LFA . C 2 LFA A 1 302 401 LFA LFA . D 2 LFA A 1 303 501 LFA LFA . E 2 LFA A 1 304 601 LFA LFA . F 2 LFA A 1 305 701 LFA LFA . G 2 LFA A 1 306 801 LFA LFA . H 2 LFA A 1 307 901 LFA LFA . I 2 LFA A 1 308 1001 LFA LFA . J 2 LFA A 1 309 1101 LFA LFA . K 3 GOL A 1 310 1201 GOL GOL . L 2 LFA A 1 311 1301 LFA LFA . M 2 LFA A 1 312 1401 LFA LFA . N 2 LFA A 1 313 1501 LFA LFA . O 2 LFA A 1 314 1601 LFA LFA . P 3 GOL A 1 315 1701 GOL GOL . Q 3 GOL A 1 316 1801 GOL GOL . R 2 LFA A 1 317 1901 LFA LFA . S 2 LFA A 1 318 2001 LFA LFA . T 2 LFA A 1 319 2101 LFA LFA . U 3 GOL A 1 320 2201 GOL GOL . V 2 LFA A 1 321 2301 LFA LFA . W 2 LFA A 1 322 2401 LFA LFA . X 4 NA A 1 323 1 NA NA . Y 5 RET A 1 324 255 RET LYR . Z 6 HOH A 1 401 29 HOH HOH . Z 6 HOH A 2 402 40 HOH HOH . Z 6 HOH A 3 403 73 HOH HOH . Z 6 HOH A 4 404 44 HOH HOH . Z 6 HOH A 5 405 46 HOH HOH . Z 6 HOH A 6 406 37 HOH HOH . Z 6 HOH A 7 407 51 HOH HOH . Z 6 HOH A 8 408 47 HOH HOH . Z 6 HOH A 9 409 55 HOH HOH . Z 6 HOH A 10 410 5 HOH HOH . Z 6 HOH A 11 411 34 HOH HOH . Z 6 HOH A 12 412 68 HOH HOH . Z 6 HOH A 13 413 43 HOH HOH . Z 6 HOH A 14 414 90 HOH HOH . Z 6 HOH A 15 415 14 HOH HOH . Z 6 HOH A 16 416 92 HOH HOH . Z 6 HOH A 17 417 52 HOH HOH . Z 6 HOH A 18 418 18 HOH HOH . Z 6 HOH A 19 419 31 HOH HOH . Z 6 HOH A 20 420 63 HOH HOH . Z 6 HOH A 21 421 22 HOH HOH . Z 6 HOH A 22 422 49 HOH HOH . Z 6 HOH A 23 423 96 HOH HOH . Z 6 HOH A 24 424 39 HOH HOH . Z 6 HOH A 25 425 12 HOH HOH . Z 6 HOH A 26 426 21 HOH HOH . Z 6 HOH A 27 427 8 HOH HOH . Z 6 HOH A 28 428 19 HOH HOH . Z 6 HOH A 29 429 2 HOH HOH . Z 6 HOH A 30 430 48 HOH HOH . Z 6 HOH A 31 431 50 HOH HOH . Z 6 HOH A 32 432 1 HOH HOH . Z 6 HOH A 33 433 42 HOH HOH . Z 6 HOH A 34 434 9 HOH HOH . Z 6 HOH A 35 435 89 HOH HOH . Z 6 HOH A 36 436 98 HOH HOH . Z 6 HOH A 37 437 60 HOH HOH . Z 6 HOH A 38 438 91 HOH HOH . Z 6 HOH A 39 439 53 HOH HOH . Z 6 HOH A 40 440 13 HOH HOH . Z 6 HOH A 41 441 24 HOH HOH . Z 6 HOH A 42 442 32 HOH HOH . Z 6 HOH A 43 443 64 HOH HOH . Z 6 HOH A 44 444 25 HOH HOH . Z 6 HOH A 45 445 97 HOH HOH . Z 6 HOH A 46 446 17 HOH HOH . Z 6 HOH A 47 447 33 HOH HOH . Z 6 HOH A 48 448 30 HOH HOH . Z 6 HOH A 49 449 57 HOH HOH . Z 6 HOH A 50 450 38 HOH HOH . Z 6 HOH A 51 451 86 HOH HOH . Z 6 HOH A 52 452 85 HOH HOH . Z 6 HOH A 53 453 15 HOH HOH . Z 6 HOH A 54 454 69 HOH HOH . Z 6 HOH A 55 455 62 HOH HOH . Z 6 HOH A 56 456 11 HOH HOH . Z 6 HOH A 57 457 94 HOH HOH . Z 6 HOH A 58 458 76 HOH HOH . Z 6 HOH A 59 459 6 HOH HOH . Z 6 HOH A 60 460 77 HOH HOH . Z 6 HOH A 61 461 16 HOH HOH . Z 6 HOH A 62 462 10 HOH HOH . Z 6 HOH A 63 463 26 HOH HOH . Z 6 HOH A 64 464 79 HOH HOH . Z 6 HOH A 65 465 58 HOH HOH . Z 6 HOH A 66 466 67 HOH HOH . Z 6 HOH A 67 467 99 HOH HOH . Z 6 HOH A 68 468 54 HOH HOH . Z 6 HOH A 69 469 35 HOH HOH . Z 6 HOH A 70 470 72 HOH HOH . Z 6 HOH A 71 471 28 HOH HOH . Z 6 HOH A 72 472 23 HOH HOH . Z 6 HOH A 73 473 20 HOH HOH . Z 6 HOH A 74 474 78 HOH HOH . Z 6 HOH A 75 475 84 HOH HOH . Z 6 HOH A 76 476 4 HOH HOH . Z 6 HOH A 77 477 61 HOH HOH . Z 6 HOH A 78 478 80 HOH HOH . Z 6 HOH A 79 479 27 HOH HOH . Z 6 HOH A 80 480 88 HOH HOH . Z 6 HOH A 81 481 74 HOH HOH . Z 6 HOH A 82 482 41 HOH HOH . Z 6 HOH A 83 483 81 HOH HOH . Z 6 HOH A 84 484 95 HOH HOH . Z 6 HOH A 85 485 59 HOH HOH . Z 6 HOH A 86 486 7 HOH HOH . Z 6 HOH A 87 487 56 HOH HOH . Z 6 HOH A 88 488 75 HOH HOH . Z 6 HOH A 89 489 82 HOH HOH . Z 6 HOH A 90 490 36 HOH HOH . Z 6 HOH A 91 491 70 HOH HOH . Z 6 HOH A 92 492 71 HOH HOH . Z 6 HOH A 93 493 83 HOH HOH . Z 6 HOH A 94 494 87 HOH HOH . Z 6 HOH A 95 495 65 HOH HOH . Z 6 HOH A 96 496 93 HOH HOH . Z 6 HOH A 97 497 66 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id X _atom_site.label_entity_id 4 _atom_site.Cartn_x 14.683 _atom_site.Cartn_y 32.464 _atom_site.Cartn_z 7.656 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 323 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #