data_6RFB # _model_server_result.job_id yMuQSywfc-OpI9vzfXSKnQ _model_server_result.datetime_utc '2024-11-21 13:42:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6RFB # _exptl.entry_id 6RFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RFB _cell.length_a 40.796 _cell.length_b 83 _cell.length_c 234.096 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 255 A LYS 255 1_555 MA C15 RET . A RET 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc2 A O THR 83 A THR 83 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc3 A O PHE 86 A PHE 86 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RFB _atom_sites.fract_transf_matrix[1][1] 0.024512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004272 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 3 LFA A 1 302 302 LFA LFA . D 3 LFA A 1 303 303 LFA LFA . E 3 LFA A 1 304 304 LFA LFA . F 3 LFA A 1 305 305 LFA LFA . G 3 LFA A 1 306 306 LFA LFA . H 3 LFA A 1 307 307 LFA LFA . I 3 LFA A 1 308 308 LFA LFA . J 3 LFA A 1 309 309 LFA LFA . K 3 LFA A 1 310 310 LFA LFA . L 3 LFA A 1 311 311 LFA LFA . M 3 LFA A 1 312 312 LFA LFA . N 3 LFA A 1 313 313 LFA LFA . O 3 LFA A 1 314 314 LFA LFA . P 3 LFA A 1 315 315 LFA LFA . Q 3 LFA A 1 316 316 LFA LFA . R 3 LFA A 1 317 317 LFA LFA . S 3 LFA A 1 318 318 LFA LFA . T 3 LFA A 1 319 319 LFA LFA . U 3 LFA A 1 320 320 LFA LFA . V 3 LFA A 1 321 321 LFA LFA . W 3 LFA A 1 322 322 LFA LFA . X 3 LFA A 1 323 323 LFA LFA . Y 3 LFA A 1 324 324 LFA LFA . Z 3 LFA A 1 325 325 LFA LFA . AA 3 LFA A 1 326 326 LFA LFA . BA 3 LFA A 1 327 327 LFA LFA . CA 3 LFA A 1 328 328 LFA LFA . DA 3 LFA A 1 329 329 LFA LFA . EA 3 LFA A 1 330 330 LFA LFA . FA 3 LFA A 1 331 331 LFA LFA . GA 3 LFA A 1 332 332 LFA LFA . HA 3 LFA A 1 333 333 LFA LFA . IA 3 LFA A 1 334 334 LFA LFA . JA 3 LFA A 1 335 335 LFA LFA . KA 4 GOL A 1 336 336 GOL GOL . LA 4 GOL A 1 337 337 GOL GOL . MA 5 RET A 1 338 255 RET LYR . NA 6 HOH A 1 401 19 HOH HOH . NA 6 HOH A 2 402 12 HOH HOH . NA 6 HOH A 3 403 16 HOH HOH . NA 6 HOH A 4 404 24 HOH HOH . NA 6 HOH A 5 405 29 HOH HOH . NA 6 HOH A 6 406 2 HOH HOH . NA 6 HOH A 7 407 3 HOH HOH . NA 6 HOH A 8 408 1 HOH HOH . NA 6 HOH A 9 409 13 HOH HOH . NA 6 HOH A 10 410 25 HOH HOH . NA 6 HOH A 11 411 18 HOH HOH . NA 6 HOH A 12 412 4 HOH HOH . NA 6 HOH A 13 413 23 HOH HOH . NA 6 HOH A 14 414 17 HOH HOH . NA 6 HOH A 15 415 21 HOH HOH . NA 6 HOH A 16 416 20 HOH HOH . NA 6 HOH A 17 417 28 HOH HOH . NA 6 HOH A 18 418 9 HOH HOH . NA 6 HOH A 19 419 11 HOH HOH . NA 6 HOH A 20 420 27 HOH HOH . NA 6 HOH A 21 421 22 HOH HOH . NA 6 HOH A 22 422 26 HOH HOH . NA 6 HOH A 23 423 10 HOH HOH . NA 6 HOH A 24 424 6 HOH HOH . NA 6 HOH A 25 425 15 HOH HOH . NA 6 HOH A 26 426 14 HOH HOH . NA 6 HOH A 27 427 5 HOH HOH . NA 6 HOH A 28 428 7 HOH HOH . NA 6 HOH A 29 429 8 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.476 _atom_site.Cartn_y 8.149 _atom_site.Cartn_z 7.127 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #