data_6RFB # _model_server_result.job_id qMACouhGJPs6cRu-fvQ8JQ _model_server_result.datetime_utc '2024-10-18 16:24:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":325}' # _entry.id 6RFB # _exptl.entry_id 6RFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.547 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EICOSANE _entity.pdbx_number_of_molecules 34 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RFB _cell.length_a 40.796 _cell.length_b 83 _cell.length_c 234.096 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 255 A LYS 255 1_555 MA C15 RET . A RET 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc2 A O THR 83 A THR 83 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc3 A O PHE 86 A PHE 86 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? # _chem_comp.formula 'C20 H42' _chem_comp.formula_weight 282.547 _chem_comp.id LFA _chem_comp.mon_nstd_flag . _chem_comp.name EICOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LFA sing 194 n n C1 H11 LFA sing 195 n n C1 H12 LFA sing 196 n n C1 H13 LFA sing 197 n n C2 C3 LFA sing 198 n n C2 H21 LFA sing 199 n n C2 H22 LFA sing 200 n n C3 C4 LFA sing 201 n n C3 H31 LFA sing 202 n n C3 H32 LFA sing 203 n n C4 C5 LFA sing 204 n n C4 H41 LFA sing 205 n n C4 H42 LFA sing 206 n n C5 C6 LFA sing 207 n n C5 H51 LFA sing 208 n n C5 H52 LFA sing 209 n n C6 C7 LFA sing 210 n n C6 H61 LFA sing 211 n n C6 H62 LFA sing 212 n n C7 C8 LFA sing 213 n n C7 H71 LFA sing 214 n n C7 H72 LFA sing 215 n n C8 C9 LFA sing 216 n n C8 H81 LFA sing 217 n n C8 H82 LFA sing 218 n n C9 C10 LFA sing 219 n n C9 H91 LFA sing 220 n n C9 H92 LFA sing 221 n n C10 C11 LFA sing 222 n n C10 H101 LFA sing 223 n n C10 H102 LFA sing 224 n n C11 C12 LFA sing 225 n n C11 H111 LFA sing 226 n n C11 H112 LFA sing 227 n n C12 C13 LFA sing 228 n n C12 H121 LFA sing 229 n n C12 H122 LFA sing 230 n n C13 C14 LFA sing 231 n n C13 H131 LFA sing 232 n n C13 H132 LFA sing 233 n n C14 C15 LFA sing 234 n n C14 H141 LFA sing 235 n n C14 H142 LFA sing 236 n n C15 C16 LFA sing 237 n n C15 H151 LFA sing 238 n n C15 H152 LFA sing 239 n n C16 C17 LFA sing 240 n n C16 H161 LFA sing 241 n n C16 H162 LFA sing 242 n n C17 C18 LFA sing 243 n n C17 H171 LFA sing 244 n n C17 H172 LFA sing 245 n n C18 C19 LFA sing 246 n n C18 H181 LFA sing 247 n n C18 H182 LFA sing 248 n n C19 C20 LFA sing 249 n n C19 H191 LFA sing 250 n n C19 H192 LFA sing 251 n n C20 H201 LFA sing 252 n n C20 H202 LFA sing 253 n n C20 H203 LFA sing 254 n n # _atom_sites.entry_id 6RFB _atom_sites.fract_transf_matrix[1][1] 0.024512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004272 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 3 LFA A 1 302 302 LFA LFA . D 3 LFA A 1 303 303 LFA LFA . E 3 LFA A 1 304 304 LFA LFA . F 3 LFA A 1 305 305 LFA LFA . G 3 LFA A 1 306 306 LFA LFA . H 3 LFA A 1 307 307 LFA LFA . I 3 LFA A 1 308 308 LFA LFA . J 3 LFA A 1 309 309 LFA LFA . K 3 LFA A 1 310 310 LFA LFA . L 3 LFA A 1 311 311 LFA LFA . M 3 LFA A 1 312 312 LFA LFA . N 3 LFA A 1 313 313 LFA LFA . O 3 LFA A 1 314 314 LFA LFA . P 3 LFA A 1 315 315 LFA LFA . Q 3 LFA A 1 316 316 LFA LFA . R 3 LFA A 1 317 317 LFA LFA . S 3 LFA A 1 318 318 LFA LFA . T 3 LFA A 1 319 319 LFA LFA . U 3 LFA A 1 320 320 LFA LFA . V 3 LFA A 1 321 321 LFA LFA . W 3 LFA A 1 322 322 LFA LFA . X 3 LFA A 1 323 323 LFA LFA . Y 3 LFA A 1 324 324 LFA LFA . Z 3 LFA A 1 325 325 LFA LFA . AA 3 LFA A 1 326 326 LFA LFA . BA 3 LFA A 1 327 327 LFA LFA . CA 3 LFA A 1 328 328 LFA LFA . DA 3 LFA A 1 329 329 LFA LFA . EA 3 LFA A 1 330 330 LFA LFA . FA 3 LFA A 1 331 331 LFA LFA . GA 3 LFA A 1 332 332 LFA LFA . HA 3 LFA A 1 333 333 LFA LFA . IA 3 LFA A 1 334 334 LFA LFA . JA 3 LFA A 1 335 335 LFA LFA . KA 4 GOL A 1 336 336 GOL GOL . LA 4 GOL A 1 337 337 GOL GOL . MA 5 RET A 1 338 255 RET LYR . NA 6 HOH A 1 401 19 HOH HOH . NA 6 HOH A 2 402 12 HOH HOH . NA 6 HOH A 3 403 16 HOH HOH . NA 6 HOH A 4 404 24 HOH HOH . NA 6 HOH A 5 405 29 HOH HOH . NA 6 HOH A 6 406 2 HOH HOH . NA 6 HOH A 7 407 3 HOH HOH . NA 6 HOH A 8 408 1 HOH HOH . NA 6 HOH A 9 409 13 HOH HOH . NA 6 HOH A 10 410 25 HOH HOH . NA 6 HOH A 11 411 18 HOH HOH . NA 6 HOH A 12 412 4 HOH HOH . NA 6 HOH A 13 413 23 HOH HOH . NA 6 HOH A 14 414 17 HOH HOH . NA 6 HOH A 15 415 21 HOH HOH . NA 6 HOH A 16 416 20 HOH HOH . NA 6 HOH A 17 417 28 HOH HOH . NA 6 HOH A 18 418 9 HOH HOH . NA 6 HOH A 19 419 11 HOH HOH . NA 6 HOH A 20 420 27 HOH HOH . NA 6 HOH A 21 421 22 HOH HOH . NA 6 HOH A 22 422 26 HOH HOH . NA 6 HOH A 23 423 10 HOH HOH . NA 6 HOH A 24 424 6 HOH HOH . NA 6 HOH A 25 425 15 HOH HOH . NA 6 HOH A 26 426 14 HOH HOH . NA 6 HOH A 27 427 5 HOH HOH . NA 6 HOH A 28 428 7 HOH HOH . NA 6 HOH A 29 429 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LFA . . . Z 3 -9.409 11.513 51.785 1 74.51 ? C1 LFA 325 A 1 HETATM 2 C C2 LFA . . . Z 3 -10.508 12.404 51.249 1 77.83 ? C2 LFA 325 A 1 HETATM 3 C C3 LFA . . . Z 3 -11.018 11.898 49.903 1 75.99 ? C3 LFA 325 A 1 HETATM 4 C C4 LFA . . . Z 3 -11.997 12.894 49.291 1 81.71 ? C4 LFA 325 A 1 HETATM 5 C C5 LFA . . . Z 3 -12.109 12.701 47.782 1 85.58 ? C5 LFA 325 A 1 HETATM 6 C C6 LFA . . . Z 3 -12.506 13.997 47.084 1 73.11 ? C6 LFA 325 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #