data_6RFC
#
_model_server_result.job_id            2oEFjUN4-GKoTAzeZ5CmeA 
_model_server_result.datetime_utc      '2024-11-16 08:56:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rfc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    6RFC 
#
_exptl.entry_id    6RFC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              282.547 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            EICOSANE 
_entity.pdbx_number_of_molecules    29 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RFC 
_cell.length_a            40.769 
_cell.length_b            81.964 
_cell.length_c            232.93 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RFC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 IA N N 
? 3 JA N N 
? 3 KA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 255 A LYS 255 1_555 LA C15 RET . A RET 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc2 A O THR 83 A THR 83 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc3 A O PHE 86 A PHE 86 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc4 B NA NA . A NA 301 1_555 MA O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc5 B NA NA . A NA 301 1_555 MA O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc6 B NA NA . A NA 301 1_555 MA O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
#
_chem_comp.formula           'C20 H42' 
_chem_comp.formula_weight    282.547 
_chem_comp.id                LFA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              EICOSANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'LIPID FRAGMENT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LFA sing 194 n n 
C1 H11 LFA sing 195 n n 
C1 H12 LFA sing 196 n n 
C1 H13 LFA sing 197 n n 
C2 C3 LFA sing 198 n n 
C2 H21 LFA sing 199 n n 
C2 H22 LFA sing 200 n n 
C3 C4 LFA sing 201 n n 
C3 H31 LFA sing 202 n n 
C3 H32 LFA sing 203 n n 
C4 C5 LFA sing 204 n n 
C4 H41 LFA sing 205 n n 
C4 H42 LFA sing 206 n n 
C5 C6 LFA sing 207 n n 
C5 H51 LFA sing 208 n n 
C5 H52 LFA sing 209 n n 
C6 C7 LFA sing 210 n n 
C6 H61 LFA sing 211 n n 
C6 H62 LFA sing 212 n n 
C7 C8 LFA sing 213 n n 
C7 H71 LFA sing 214 n n 
C7 H72 LFA sing 215 n n 
C8 C9 LFA sing 216 n n 
C8 H81 LFA sing 217 n n 
C8 H82 LFA sing 218 n n 
C9 C10 LFA sing 219 n n 
C9 H91 LFA sing 220 n n 
C9 H92 LFA sing 221 n n 
C10 C11 LFA sing 222 n n 
C10 H101 LFA sing 223 n n 
C10 H102 LFA sing 224 n n 
C11 C12 LFA sing 225 n n 
C11 H111 LFA sing 226 n n 
C11 H112 LFA sing 227 n n 
C12 C13 LFA sing 228 n n 
C12 H121 LFA sing 229 n n 
C12 H122 LFA sing 230 n n 
C13 C14 LFA sing 231 n n 
C13 H131 LFA sing 232 n n 
C13 H132 LFA sing 233 n n 
C14 C15 LFA sing 234 n n 
C14 H141 LFA sing 235 n n 
C14 H142 LFA sing 236 n n 
C15 C16 LFA sing 237 n n 
C15 H151 LFA sing 238 n n 
C15 H152 LFA sing 239 n n 
C16 C17 LFA sing 240 n n 
C16 H161 LFA sing 241 n n 
C16 H162 LFA sing 242 n n 
C17 C18 LFA sing 243 n n 
C17 H171 LFA sing 244 n n 
C17 H172 LFA sing 245 n n 
C18 C19 LFA sing 246 n n 
C18 H181 LFA sing 247 n n 
C18 H182 LFA sing 248 n n 
C19 C20 LFA sing 249 n n 
C19 H191 LFA sing 250 n n 
C19 H192 LFA sing 251 n n 
C20 H201 LFA sing 252 n n 
C20 H202 LFA sing 253 n n 
C20 H203 LFA sing 254 n n 
#
_atom_sites.entry_id                     6RFC 
_atom_sites.fract_transf_matrix[1][1]    0.024528 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0122 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004293 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 301 301 NA NA . 
C 3 LFA A 1 302 302 LFA LFA . 
D 3 LFA A 1 303 304 LFA LFA . 
E 3 LFA A 1 304 305 LFA LFA . 
F 3 LFA A 1 305 306 LFA LFA . 
G 3 LFA A 1 306 307 LFA LFA . 
H 3 LFA A 1 307 309 LFA LFA . 
I 3 LFA A 1 308 310 LFA LFA . 
J 3 LFA A 1 309 311 LFA LFA . 
K 3 LFA A 1 310 314 LFA LFA . 
L 3 LFA A 1 311 315 LFA LFA . 
M 3 LFA A 1 312 316 LFA LFA . 
N 3 LFA A 1 313 317 LFA LFA . 
O 3 LFA A 1 314 318 LFA LFA . 
P 3 LFA A 1 315 319 LFA LFA . 
Q 3 LFA A 1 316 320 LFA LFA . 
R 3 LFA A 1 317 321 LFA LFA . 
S 3 LFA A 1 318 322 LFA LFA . 
T 3 LFA A 1 319 325 LFA LFA . 
U 3 LFA A 1 320 326 LFA LFA . 
V 3 LFA A 1 321 327 LFA LFA . 
W 3 LFA A 1 322 329 LFA LFA . 
X 3 LFA A 1 323 330 LFA LFA . 
Y 3 LFA A 1 324 331 LFA LFA . 
Z 3 LFA A 1 325 332 LFA LFA . 
AA 3 LFA A 1 326 333 LFA LFA . 
BA 3 LFA A 1 327 334 LFA LFA . 
CA 4 OLC A 1 328 1 OLC OLC . 
DA 4 OLC A 1 329 2 OLC OLC . 
EA 4 OLC A 1 330 3 OLC OLC . 
FA 5 GOL A 1 331 1 GOL GOL . 
GA 5 GOL A 1 332 2 GOL GOL . 
HA 5 GOL A 1 333 3 GOL GOL . 
IA 3 LFA A 1 334 1 LFA LFA . 
JA 3 LFA A 1 335 2 LFA LFA . 
KA 3 LFA A 1 336 3 LFA LFA . 
LA 6 RET A 1 337 255 RET LYR . 
MA 7 HOH A 1 401 41 HOH HOH . 
MA 7 HOH A 2 402 42 HOH HOH . 
MA 7 HOH A 3 403 3 HOH HOH . 
MA 7 HOH A 4 404 9 HOH HOH . 
MA 7 HOH A 5 405 50 HOH HOH . 
MA 7 HOH A 6 406 29 HOH HOH . 
MA 7 HOH A 7 407 16 HOH HOH . 
MA 7 HOH A 8 408 18 HOH HOH . 
MA 7 HOH A 9 409 47 HOH HOH . 
MA 7 HOH A 10 410 13 HOH HOH . 
MA 7 HOH A 11 411 27 HOH HOH . 
MA 7 HOH A 12 412 52 HOH HOH . 
MA 7 HOH A 13 413 4 HOH HOH . 
MA 7 HOH A 14 414 37 HOH HOH . 
MA 7 HOH A 15 415 1 HOH HOH . 
MA 7 HOH A 16 416 43 HOH HOH . 
MA 7 HOH A 17 417 28 HOH HOH . 
MA 7 HOH A 18 418 38 HOH HOH . 
MA 7 HOH A 19 419 23 HOH HOH . 
MA 7 HOH A 20 420 30 HOH HOH . 
MA 7 HOH A 21 421 15 HOH HOH . 
MA 7 HOH A 22 422 51 HOH HOH . 
MA 7 HOH A 23 423 55 HOH HOH . 
MA 7 HOH A 24 424 33 HOH HOH . 
MA 7 HOH A 25 425 35 HOH HOH . 
MA 7 HOH A 26 426 46 HOH HOH . 
MA 7 HOH A 27 427 25 HOH HOH . 
MA 7 HOH A 28 428 40 HOH HOH . 
MA 7 HOH A 29 429 2 HOH HOH . 
MA 7 HOH A 30 430 44 HOH HOH . 
MA 7 HOH A 31 431 11 HOH HOH . 
MA 7 HOH A 32 432 5 HOH HOH . 
MA 7 HOH A 33 433 14 HOH HOH . 
MA 7 HOH A 34 434 31 HOH HOH . 
MA 7 HOH A 35 435 22 HOH HOH . 
MA 7 HOH A 36 436 7 HOH HOH . 
MA 7 HOH A 37 437 26 HOH HOH . 
MA 7 HOH A 38 438 19 HOH HOH . 
MA 7 HOH A 39 439 34 HOH HOH . 
MA 7 HOH A 40 440 8 HOH HOH . 
MA 7 HOH A 41 441 10 HOH HOH . 
MA 7 HOH A 42 442 6 HOH HOH . 
MA 7 HOH A 43 443 17 HOH HOH . 
MA 7 HOH A 44 444 39 HOH HOH . 
MA 7 HOH A 45 445 32 HOH HOH . 
MA 7 HOH A 46 446 45 HOH HOH . 
MA 7 HOH A 47 447 12 HOH HOH . 
MA 7 HOH A 48 448 21 HOH HOH . 
MA 7 HOH A 49 449 20 HOH HOH . 
MA 7 HOH A 50 450 53 HOH HOH . 
MA 7 HOH A 51 451 54 HOH HOH . 
MA 7 HOH A 52 452 24 HOH HOH . 
MA 7 HOH A 53 453 49 HOH HOH . 
MA 7 HOH A 54 454 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LFA . . . E 3 -14.477 24.004 33.049 1 67.9 ? C1 LFA 304 A 1 
HETATM 2 C C2 LFA . . . E 3 -14.473 24.059 31.536 1 74.22 ? C2 LFA 304 A 1 
HETATM 3 C C3 LFA . . . E 3 -13.93 25.386 31.007 1 74.67 ? C3 LFA 304 A 1 
HETATM 4 C C4 LFA . . . E 3 -13.814 25.342 29.484 1 76.91 ? C4 LFA 304 A 1 
HETATM 5 C C5 LFA . . . E 3 -13.56 26.717 28.876 1 60.57 ? C5 LFA 304 A 1 
HETATM 6 C C6 LFA . . . E 3 -13.213 26.607 27.395 1 60.04 ? C6 LFA 304 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#