data_6RFC
#
_model_server_result.job_id            5-SlT5fVHc3Fb5x0uUet6w 
_model_server_result.datetime_utc      '2024-11-16 08:28:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rfc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":331}' 
#
_entry.id    6RFC 
#
_exptl.entry_id    6RFC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RFC 
_cell.length_a            40.769 
_cell.length_b            81.964 
_cell.length_c            232.93 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RFC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 FA N N 
? 5 GA N N 
? 5 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 255 A LYS 255 1_555 LA C15 RET . A RET 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
metalc ? metalc1 A OH TYR 25 A TYR 25 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc2 A O THR 83 A THR 83 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc3 A O PHE 86 A PHE 86 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc4 B NA NA . A NA 301 1_555 MA O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc5 B NA NA . A NA 301 1_555 MA O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc6 B NA NA . A NA 301 1_555 MA O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     6RFC 
_atom_sites.fract_transf_matrix[1][1]    0.024528 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0122 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004293 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 301 301 NA NA . 
C 3 LFA A 1 302 302 LFA LFA . 
D 3 LFA A 1 303 304 LFA LFA . 
E 3 LFA A 1 304 305 LFA LFA . 
F 3 LFA A 1 305 306 LFA LFA . 
G 3 LFA A 1 306 307 LFA LFA . 
H 3 LFA A 1 307 309 LFA LFA . 
I 3 LFA A 1 308 310 LFA LFA . 
J 3 LFA A 1 309 311 LFA LFA . 
K 3 LFA A 1 310 314 LFA LFA . 
L 3 LFA A 1 311 315 LFA LFA . 
M 3 LFA A 1 312 316 LFA LFA . 
N 3 LFA A 1 313 317 LFA LFA . 
O 3 LFA A 1 314 318 LFA LFA . 
P 3 LFA A 1 315 319 LFA LFA . 
Q 3 LFA A 1 316 320 LFA LFA . 
R 3 LFA A 1 317 321 LFA LFA . 
S 3 LFA A 1 318 322 LFA LFA . 
T 3 LFA A 1 319 325 LFA LFA . 
U 3 LFA A 1 320 326 LFA LFA . 
V 3 LFA A 1 321 327 LFA LFA . 
W 3 LFA A 1 322 329 LFA LFA . 
X 3 LFA A 1 323 330 LFA LFA . 
Y 3 LFA A 1 324 331 LFA LFA . 
Z 3 LFA A 1 325 332 LFA LFA . 
AA 3 LFA A 1 326 333 LFA LFA . 
BA 3 LFA A 1 327 334 LFA LFA . 
CA 4 OLC A 1 328 1 OLC OLC . 
DA 4 OLC A 1 329 2 OLC OLC . 
EA 4 OLC A 1 330 3 OLC OLC . 
FA 5 GOL A 1 331 1 GOL GOL . 
GA 5 GOL A 1 332 2 GOL GOL . 
HA 5 GOL A 1 333 3 GOL GOL . 
IA 3 LFA A 1 334 1 LFA LFA . 
JA 3 LFA A 1 335 2 LFA LFA . 
KA 3 LFA A 1 336 3 LFA LFA . 
LA 6 RET A 1 337 255 RET LYR . 
MA 7 HOH A 1 401 41 HOH HOH . 
MA 7 HOH A 2 402 42 HOH HOH . 
MA 7 HOH A 3 403 3 HOH HOH . 
MA 7 HOH A 4 404 9 HOH HOH . 
MA 7 HOH A 5 405 50 HOH HOH . 
MA 7 HOH A 6 406 29 HOH HOH . 
MA 7 HOH A 7 407 16 HOH HOH . 
MA 7 HOH A 8 408 18 HOH HOH . 
MA 7 HOH A 9 409 47 HOH HOH . 
MA 7 HOH A 10 410 13 HOH HOH . 
MA 7 HOH A 11 411 27 HOH HOH . 
MA 7 HOH A 12 412 52 HOH HOH . 
MA 7 HOH A 13 413 4 HOH HOH . 
MA 7 HOH A 14 414 37 HOH HOH . 
MA 7 HOH A 15 415 1 HOH HOH . 
MA 7 HOH A 16 416 43 HOH HOH . 
MA 7 HOH A 17 417 28 HOH HOH . 
MA 7 HOH A 18 418 38 HOH HOH . 
MA 7 HOH A 19 419 23 HOH HOH . 
MA 7 HOH A 20 420 30 HOH HOH . 
MA 7 HOH A 21 421 15 HOH HOH . 
MA 7 HOH A 22 422 51 HOH HOH . 
MA 7 HOH A 23 423 55 HOH HOH . 
MA 7 HOH A 24 424 33 HOH HOH . 
MA 7 HOH A 25 425 35 HOH HOH . 
MA 7 HOH A 26 426 46 HOH HOH . 
MA 7 HOH A 27 427 25 HOH HOH . 
MA 7 HOH A 28 428 40 HOH HOH . 
MA 7 HOH A 29 429 2 HOH HOH . 
MA 7 HOH A 30 430 44 HOH HOH . 
MA 7 HOH A 31 431 11 HOH HOH . 
MA 7 HOH A 32 432 5 HOH HOH . 
MA 7 HOH A 33 433 14 HOH HOH . 
MA 7 HOH A 34 434 31 HOH HOH . 
MA 7 HOH A 35 435 22 HOH HOH . 
MA 7 HOH A 36 436 7 HOH HOH . 
MA 7 HOH A 37 437 26 HOH HOH . 
MA 7 HOH A 38 438 19 HOH HOH . 
MA 7 HOH A 39 439 34 HOH HOH . 
MA 7 HOH A 40 440 8 HOH HOH . 
MA 7 HOH A 41 441 10 HOH HOH . 
MA 7 HOH A 42 442 6 HOH HOH . 
MA 7 HOH A 43 443 17 HOH HOH . 
MA 7 HOH A 44 444 39 HOH HOH . 
MA 7 HOH A 45 445 32 HOH HOH . 
MA 7 HOH A 46 446 45 HOH HOH . 
MA 7 HOH A 47 447 12 HOH HOH . 
MA 7 HOH A 48 448 21 HOH HOH . 
MA 7 HOH A 49 449 20 HOH HOH . 
MA 7 HOH A 50 450 53 HOH HOH . 
MA 7 HOH A 51 451 54 HOH HOH . 
MA 7 HOH A 52 452 24 HOH HOH . 
MA 7 HOH A 53 453 49 HOH HOH . 
MA 7 HOH A 54 454 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . FA 5 -7.48 12.26 6.971 1 72.52 ? C1 GOL 331 A 1 
HETATM 2 O O1 GOL . . . FA 5 -8.733 12.806 6.533 1 66.93 ? O1 GOL 331 A 1 
HETATM 3 C C2 GOL . . . FA 5 -6.499 12.155 5.81 1 83.88 ? C2 GOL 331 A 1 
HETATM 4 O O2 GOL . . . FA 5 -5.331 11.431 6.216 1 78.43 ? O2 GOL 331 A 1 
HETATM 5 C C3 GOL . . . FA 5 -6.1 13.545 5.327 1 82.16 ? C3 GOL 331 A 1 
HETATM 6 O O3 GOL . . . FA 5 -4.827 13.481 4.672 1 77.35 ? O3 GOL 331 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#