data_6RFJ # _model_server_result.job_id '_lI3GfS6E6ovDN1Rysegyw' _model_server_result.datetime_utc '2024-11-25 17:14:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rfj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6RFJ # _exptl.entry_id 6RFJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 504.587 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 4-[4-[[6-(cyanomethyl)-2-[(1-methylpyrazol-4-yl)amino]pyrido[3,2-d]pyrimidin-4-yl]amino]cyclohexyl]piperazine-1-carboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RFJ _cell.length_a 87.607 _cell.length_b 118.925 _cell.length_c 140.507 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RFJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MET 206 A MET 344 1_555 A N TPO 207 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C TPO 207 A TPO 345 1_555 A N SEP 208 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C SEP 208 A SEP 346 1_555 A N ARG 209 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale4 B C MET 206 B MET 344 1_555 B N TPO 207 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale5 B C TPO 207 B TPO 345 1_555 B N SEP 208 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale6 B C SEP 208 B SEP 346 1_555 B N ARG 209 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C25 H32 N10 O2' _chem_comp.formula_weight 504.587 _chem_comp.id K1E _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 4-[4-[[6-(cyanomethyl)-2-[(1-methylpyrazol-4-yl)amino]pyrido[3,2-d]pyrimidin-4-yl]amino]cyclohexyl]piperazine-1-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O35 C34 K1E doub 173 n n C32 C33 K1E sing 174 n n C32 N31 K1E sing 175 n n C34 N31 K1E sing 176 n n C34 O36 K1E sing 177 n n C33 N28 K1E sing 178 n n N31 C30 K1E sing 179 n n C37 O36 K1E sing 180 n n N28 C25 K1E sing 181 n n N28 C29 K1E sing 182 n n C30 C29 K1E sing 183 n n C25 C26 K1E sing 184 n n C25 C24 K1E sing 185 n n C26 C27 K1E sing 186 n n N20 C19 K1E trip 187 n n C27 C22 K1E sing 188 n n C24 C23 K1E sing 189 n n C19 C18 K1E sing 190 n n C23 C22 K1E sing 191 n n C22 N21 K1E sing 192 n n N21 C10 K1E sing 193 n n C18 C13 K1E sing 194 n n N12 C13 K1E doub 195 n y N12 C11 K1E sing 196 n y C10 C11 K1E doub 197 n y C10 N9 K1E sing 198 n y C13 C14 K1E sing 199 n y C11 C16 K1E sing 200 n y N9 C8 K1E doub 201 n y C4 N3 K1E doub 202 n y C4 C5 K1E sing 203 n y N3 N2 K1E sing 204 n y C14 C15 K1E doub 205 n y C16 C15 K1E sing 206 n y C16 N17 K1E doub 207 n y C8 N17 K1E sing 208 n y C8 N7 K1E sing 209 n n C5 N7 K1E sing 210 n n C5 C6 K1E doub 211 n y N2 C1 K1E sing 212 n n N2 C6 K1E sing 213 n y C1 H1 K1E sing 214 n n C1 H2 K1E sing 215 n n C1 H3 K1E sing 216 n n C14 H4 K1E sing 217 n n C15 H5 K1E sing 218 n n C22 H6 K1E sing 219 n n C24 H7 K1E sing 220 n n C24 H8 K1E sing 221 n n C27 H9 K1E sing 222 n n C27 H10 K1E sing 223 n n C30 H11 K1E sing 224 n n C30 H12 K1E sing 225 n n C32 H13 K1E sing 226 n n C32 H14 K1E sing 227 n n C33 H15 K1E sing 228 n n C33 H16 K1E sing 229 n n C4 H17 K1E sing 230 n n C6 H18 K1E sing 231 n n N7 H19 K1E sing 232 n n C18 H20 K1E sing 233 n n C18 H21 K1E sing 234 n n N21 H22 K1E sing 235 n n C23 H23 K1E sing 236 n n C23 H24 K1E sing 237 n n C25 H25 K1E sing 238 n n C26 H26 K1E sing 239 n n C26 H27 K1E sing 240 n n C29 H29 K1E sing 241 n n C29 H30 K1E sing 242 n n C37 H31 K1E sing 243 n n C37 H32 K1E sing 244 n n C37 H33 K1E sing 245 n n # _atom_sites.entry_id 6RFJ _atom_sites.fract_transf_matrix[1][1] 0.011415 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K1E A 1 501 1 K1E INH . D 3 SO4 B 1 501 1 SO4 SO4 . E 2 K1E B 1 502 2 K1E INH . F 4 HOH A 1 601 13 HOH HOH . F 4 HOH A 2 602 17 HOH HOH . F 4 HOH A 3 603 8 HOH HOH . F 4 HOH A 4 604 16 HOH HOH . F 4 HOH A 5 605 18 HOH HOH . F 4 HOH A 6 606 12 HOH HOH . F 4 HOH A 7 607 15 HOH HOH . F 4 HOH A 8 608 4 HOH HOH . G 4 HOH B 1 601 3 HOH HOH . G 4 HOH B 2 602 1 HOH HOH . G 4 HOH B 3 603 23 HOH HOH . G 4 HOH B 4 604 5 HOH HOH . G 4 HOH B 5 605 20 HOH HOH . G 4 HOH B 6 606 2 HOH HOH . G 4 HOH B 7 607 11 HOH HOH . G 4 HOH B 8 608 7 HOH HOH . G 4 HOH B 9 609 24 HOH HOH . G 4 HOH B 10 610 10 HOH HOH . G 4 HOH B 11 611 22 HOH HOH . G 4 HOH B 12 612 6 HOH HOH . G 4 HOH B 13 613 9 HOH HOH . G 4 HOH B 14 614 14 HOH HOH . G 4 HOH B 15 615 21 HOH HOH . G 4 HOH B 16 616 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K1E . . . C 2 -26.176 -38.631 -5.855 1 44.78 ? C1 K1E 501 A 1 HETATM 2 C C8 K1E . . . C 2 -20.206 -39.375 -6.928 1 53.86 ? C8 K1E 501 A 1 HETATM 3 C C10 K1E . . . C 2 -19.468 -39.9 -9.054 1 58.31 ? C10 K1E 501 A 1 HETATM 4 C C11 K1E . . . C 2 -18.116 -39.909 -8.568 1 59.33 ? C11 K1E 501 A 1 HETATM 5 C C13 K1E . . . C 2 -15.832 -40.167 -8.874 1 67.52 ? C13 K1E 501 A 1 HETATM 6 C C14 K1E . . . C 2 -15.573 -39.896 -7.527 1 67.8 ? C14 K1E 501 A 1 HETATM 7 C C15 K1E . . . C 2 -16.615 -39.625 -6.689 1 64.75 ? C15 K1E 501 A 1 HETATM 8 C C16 K1E . . . C 2 -17.934 -39.623 -7.187 1 60.24 ? C16 K1E 501 A 1 HETATM 9 C C19 K1E . . . C 2 -15.246 -40.717 -11.163 1 77.86 ? C19 K1E 501 A 1 HETATM 10 C C22 K1E . . . C 2 -21.127 -40.153 -10.853 1 54.51 ? C22 K1E 501 A 1 HETATM 11 C C24 K1E . . . C 2 -23.178 -38.857 -11.542 1 53.83 ? C24 K1E 501 A 1 HETATM 12 C C27 K1E . . . C 2 -21.279 -41.066 -12.055 1 54.45 ? C27 K1E 501 A 1 HETATM 13 C C30 K1E . . . C 2 -27.151 -40.407 -12.997 1 58.19 ? C30 K1E 501 A 1 HETATM 14 C C32 K1E . . . C 2 -26.226 -40.039 -15.242 1 58.4 ? C32 K1E 501 A 1 HETATM 15 C C33 K1E . . . C 2 -24.831 -40.298 -14.678 1 54.84 ? C33 K1E 501 A 1 HETATM 16 C C34 K1E . . . C 2 -28.059 -41.699 -14.913 1 67.99 ? C34 K1E 501 A 1 HETATM 17 N N2 K1E . . . C 2 -24.818 -38.85 -6.329 1 45.32 ? N2 K1E 501 A 1 HETATM 18 N N3 K1E . . . C 2 -24.576 -39.161 -7.647 1 48.66 ? N3 K1E 501 A 1 HETATM 19 C C4 K1E . . . C 2 -23.264 -39.291 -7.726 1 48 ? C4 K1E 501 A 1 HETATM 20 C C5 K1E . . . C 2 -22.66 -39.071 -6.485 1 46.38 ? C5 K1E 501 A 1 HETATM 21 C C6 K1E . . . C 2 -23.683 -38.794 -5.624 1 46.61 ? C6 K1E 501 A 1 HETATM 22 N N7 K1E . . . C 2 -21.302 -39.109 -6.129 1 46.42 ? N7 K1E 501 A 1 HETATM 23 N N9 K1E . . . C 2 -20.471 -39.635 -8.222 1 58.4 ? N9 K1E 501 A 1 HETATM 24 N N12 K1E . . . C 2 -17.063 -40.177 -9.396 1 62.55 ? N12 K1E 501 A 1 HETATM 25 N N17 K1E . . . C 2 -18.99 -39.352 -6.35 1 56.48 ? N17 K1E 501 A 1 HETATM 26 C C18 K1E . . . C 2 -14.702 -40.471 -9.829 1 70.96 ? C18 K1E 501 A 1 HETATM 27 N N20 K1E . . . C 2 -15.655 -40.909 -12.205 1 83.19 ? N20 K1E 501 A 1 HETATM 28 N N21 K1E . . . C 2 -19.761 -40.155 -10.347 1 56.13 ? N21 K1E 501 A 1 HETATM 29 C C23 K1E . . . C 2 -21.689 -38.774 -11.155 1 54.41 ? C23 K1E 501 A 1 HETATM 30 C C25 K1E . . . C 2 -23.419 -39.876 -12.667 1 53.33 ? C25 K1E 501 A 1 HETATM 31 C C26 K1E . . . C 2 -22.754 -41.232 -12.411 1 54.15 ? C26 K1E 501 A 1 HETATM 32 N N28 K1E . . . C 2 -24.774 -39.908 -13.256 1 55.07 ? N28 K1E 501 A 1 HETATM 33 C C29 K1E . . . C 2 -25.752 -40.689 -12.489 1 56.69 ? C29 K1E 501 A 1 HETATM 34 N N31 K1E . . . C 2 -27.246 -40.727 -14.429 1 62.08 ? N31 K1E 501 A 1 HETATM 35 O O35 K1E . . . C 2 -28.156 -41.983 -16.085 1 68.56 ? O35 K1E 501 A 1 HETATM 36 O O36 K1E . . . C 2 -28.741 -42.308 -13.927 1 70.59 ? O36 K1E 501 A 1 HETATM 37 C C37 K1E . . . C 2 -29.641 -43.368 -14.342 1 72.23 ? C37 K1E 501 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #