data_6RFJ
#
_model_server_result.job_id            661oYxtDbGF7t2D9NPjoWg 
_model_server_result.datetime_utc      '2024-11-22 12:21:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rfj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    6RFJ 
#
_exptl.entry_id    6RFJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              504.587 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl 4-[4-[[6-(cyanomethyl)-2-[(1-methylpyrazol-4-yl)amino]pyrido[3,2-d]pyrimidin-4-yl]amino]cyclohexyl]piperazine-1-carboxylate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RFJ 
_cell.length_a            87.607 
_cell.length_b            118.925 
_cell.length_c            140.507 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RFJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MET 206 A MET 344 1_555 A N TPO 207 A TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale2 A C TPO 207 A TPO 345 1_555 A N SEP 208 A SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C SEP 208 A SEP 346 1_555 A N ARG 209 A ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? 
covale ? covale4 B C MET 206 B MET 344 1_555 B N TPO 207 B TPO 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale5 B C TPO 207 B TPO 345 1_555 B N SEP 208 B SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale6 B C SEP 208 B SEP 346 1_555 B N ARG 209 B ARG 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
#
_chem_comp.formula           'C25 H32 N10 O2' 
_chem_comp.formula_weight    504.587 
_chem_comp.id                K1E 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl 4-[4-[[6-(cyanomethyl)-2-[(1-methylpyrazol-4-yl)amino]pyrido[3,2-d]pyrimidin-4-yl]amino]cyclohexyl]piperazine-1-carboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O35 C34 K1E doub 173 n n 
C32 C33 K1E sing 174 n n 
C32 N31 K1E sing 175 n n 
C34 N31 K1E sing 176 n n 
C34 O36 K1E sing 177 n n 
C33 N28 K1E sing 178 n n 
N31 C30 K1E sing 179 n n 
C37 O36 K1E sing 180 n n 
N28 C25 K1E sing 181 n n 
N28 C29 K1E sing 182 n n 
C30 C29 K1E sing 183 n n 
C25 C26 K1E sing 184 n n 
C25 C24 K1E sing 185 n n 
C26 C27 K1E sing 186 n n 
N20 C19 K1E trip 187 n n 
C27 C22 K1E sing 188 n n 
C24 C23 K1E sing 189 n n 
C19 C18 K1E sing 190 n n 
C23 C22 K1E sing 191 n n 
C22 N21 K1E sing 192 n n 
N21 C10 K1E sing 193 n n 
C18 C13 K1E sing 194 n n 
N12 C13 K1E doub 195 n y 
N12 C11 K1E sing 196 n y 
C10 C11 K1E doub 197 n y 
C10 N9 K1E sing 198 n y 
C13 C14 K1E sing 199 n y 
C11 C16 K1E sing 200 n y 
N9 C8 K1E doub 201 n y 
C4 N3 K1E doub 202 n y 
C4 C5 K1E sing 203 n y 
N3 N2 K1E sing 204 n y 
C14 C15 K1E doub 205 n y 
C16 C15 K1E sing 206 n y 
C16 N17 K1E doub 207 n y 
C8 N17 K1E sing 208 n y 
C8 N7 K1E sing 209 n n 
C5 N7 K1E sing 210 n n 
C5 C6 K1E doub 211 n y 
N2 C1 K1E sing 212 n n 
N2 C6 K1E sing 213 n y 
C1 H1 K1E sing 214 n n 
C1 H2 K1E sing 215 n n 
C1 H3 K1E sing 216 n n 
C14 H4 K1E sing 217 n n 
C15 H5 K1E sing 218 n n 
C22 H6 K1E sing 219 n n 
C24 H7 K1E sing 220 n n 
C24 H8 K1E sing 221 n n 
C27 H9 K1E sing 222 n n 
C27 H10 K1E sing 223 n n 
C30 H11 K1E sing 224 n n 
C30 H12 K1E sing 225 n n 
C32 H13 K1E sing 226 n n 
C32 H14 K1E sing 227 n n 
C33 H15 K1E sing 228 n n 
C33 H16 K1E sing 229 n n 
C4 H17 K1E sing 230 n n 
C6 H18 K1E sing 231 n n 
N7 H19 K1E sing 232 n n 
C18 H20 K1E sing 233 n n 
C18 H21 K1E sing 234 n n 
N21 H22 K1E sing 235 n n 
C23 H23 K1E sing 236 n n 
C23 H24 K1E sing 237 n n 
C25 H25 K1E sing 238 n n 
C26 H26 K1E sing 239 n n 
C26 H27 K1E sing 240 n n 
C29 H29 K1E sing 241 n n 
C29 H30 K1E sing 242 n n 
C37 H31 K1E sing 243 n n 
C37 H32 K1E sing 244 n n 
C37 H33 K1E sing 245 n n 
#
_atom_sites.entry_id                     6RFJ 
_atom_sites.fract_transf_matrix[1][1]    0.011415 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008409 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007117 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 K1E A 1 501 1 K1E INH . 
D 3 SO4 B 1 501 1 SO4 SO4 . 
E 2 K1E B 1 502 2 K1E INH . 
F 4 HOH A 1 601 13 HOH HOH . 
F 4 HOH A 2 602 17 HOH HOH . 
F 4 HOH A 3 603 8 HOH HOH . 
F 4 HOH A 4 604 16 HOH HOH . 
F 4 HOH A 5 605 18 HOH HOH . 
F 4 HOH A 6 606 12 HOH HOH . 
F 4 HOH A 7 607 15 HOH HOH . 
F 4 HOH A 8 608 4 HOH HOH . 
G 4 HOH B 1 601 3 HOH HOH . 
G 4 HOH B 2 602 1 HOH HOH . 
G 4 HOH B 3 603 23 HOH HOH . 
G 4 HOH B 4 604 5 HOH HOH . 
G 4 HOH B 5 605 20 HOH HOH . 
G 4 HOH B 6 606 2 HOH HOH . 
G 4 HOH B 7 607 11 HOH HOH . 
G 4 HOH B 8 608 7 HOH HOH . 
G 4 HOH B 9 609 24 HOH HOH . 
G 4 HOH B 10 610 10 HOH HOH . 
G 4 HOH B 11 611 22 HOH HOH . 
G 4 HOH B 12 612 6 HOH HOH . 
G 4 HOH B 13 613 9 HOH HOH . 
G 4 HOH B 14 614 14 HOH HOH . 
G 4 HOH B 15 615 21 HOH HOH . 
G 4 HOH B 16 616 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 K1E . . . E 2 -45.754 -18.398 -6.718 1 45.64 ? C1 K1E 502 B 1 
HETATM 2 C C8 K1E . . . E 2 -51.799 -17.959 -7.699 1 43.21 ? C8 K1E 502 B 1 
HETATM 3 C C10 K1E . . . E 2 -52.601 -17.541 -9.831 1 43.97 ? C10 K1E 502 B 1 
HETATM 4 C C11 K1E . . . E 2 -53.942 -17.577 -9.316 1 42.48 ? C11 K1E 502 B 1 
HETATM 5 C C13 K1E . . . E 2 -56.241 -17.434 -9.58 1 51.38 ? C13 K1E 502 B 1 
HETATM 6 C C14 K1E . . . E 2 -56.461 -17.672 -8.216 1 52.18 ? C14 K1E 502 B 1 
HETATM 7 C C15 K1E . . . E 2 -55.391 -17.866 -7.388 1 47.55 ? C15 K1E 502 B 1 
HETATM 8 C C16 K1E . . . E 2 -54.082 -17.825 -7.913 1 42.84 ? C16 K1E 502 B 1 
HETATM 9 C C19 K1E . . . E 2 -56.993 -16.981 -11.904 1 64.75 ? C19 K1E 502 B 1 
HETATM 10 C C22 K1E . . . E 2 -50.903 -17.3 -11.577 1 51.74 ? C22 K1E 502 B 1 
HETATM 11 C C24 K1E . . . E 2 -48.836 -18.685 -12.086 1 53.77 ? C24 K1E 502 B 1 
HETATM 12 C C27 K1E . . . E 2 -50.734 -16.562 -12.893 1 50.82 ? C27 K1E 502 B 1 
HETATM 13 C C30 K1E . . . E 2 -44.891 -17.438 -13.961 1 68.77 ? C30 K1E 502 B 1 
HETATM 14 C C32 K1E . . . E 2 -45.898 -18.211 -16.045 1 64.23 ? C32 K1E 502 B 1 
HETATM 15 C C33 K1E . . . E 2 -47.278 -17.887 -15.479 1 59.37 ? C33 K1E 502 B 1 
HETATM 16 C C34 K1E . . . E 2 -43.761 -16.965 -16.111 1 78.89 ? C34 K1E 502 B 1 
HETATM 17 N N2 K1E . . . E 2 -47.124 -18.254 -7.193 1 46.13 ? N2 K1E 502 B 1 
HETATM 18 N N3 K1E . . . E 2 -47.391 -17.998 -8.533 1 47.91 ? N3 K1E 502 B 1 
HETATM 19 C C4 K1E . . . E 2 -48.714 -17.929 -8.593 1 44.08 ? C4 K1E 502 B 1 
HETATM 20 C C5 K1E . . . E 2 -49.298 -18.13 -7.34 1 39.54 ? C5 K1E 502 B 1 
HETATM 21 C C6 K1E . . . E 2 -48.255 -18.333 -6.479 1 42.33 ? C6 K1E 502 B 1 
HETATM 22 N N7 K1E . . . E 2 -50.65 -18.143 -6.952 1 39.91 ? N7 K1E 502 B 1 
HETATM 23 N N9 K1E . . . E 2 -51.58 -17.732 -9.007 1 47.28 ? N9 K1E 502 B 1 
HETATM 24 N N12 K1E . . . E 2 -55.024 -17.386 -10.127 1 44.18 ? N12 K1E 502 B 1 
HETATM 25 N N17 K1E . . . E 2 -52.999 -18.02 -7.088 1 39.87 ? N17 K1E 502 B 1 
HETATM 26 C C18 K1E . . . E 2 -57.402 -17.216 -10.519 1 58.88 ? C18 K1E 502 B 1 
HETATM 27 N N20 K1E . . . E 2 -56.656 -16.801 -12.976 1 68.87 ? N20 K1E 502 B 1 
HETATM 28 N N21 K1E . . . E 2 -52.308 -17.317 -11.138 1 48.58 ? N21 K1E 502 B 1 
HETATM 29 C C23 K1E . . . E 2 -50.32 -18.708 -11.68 1 51.96 ? C23 K1E 502 B 1 
HETATM 30 C C25 K1E . . . E 2 -48.631 -17.898 -13.386 1 54.3 ? C25 K1E 502 B 1 
HETATM 31 C C26 K1E . . . E 2 -49.262 -16.506 -13.31 1 50.12 ? C26 K1E 502 B 1 
HETATM 32 N N28 K1E . . . E 2 -47.288 -18.016 -14.01 1 58.89 ? N28 K1E 502 B 1 
HETATM 33 C C29 K1E . . . E 2 -46.274 -17.127 -13.422 1 63.74 ? C29 K1E 502 B 1 
HETATM 34 N N31 K1E . . . E 2 -44.877 -17.344 -15.432 1 71.95 ? N31 K1E 502 B 1 
HETATM 35 O O35 K1E . . . E 2 -43.698 -16.873 -17.314 1 80.92 ? O35 K1E 502 B 1 
HETATM 36 O O36 K1E . . . E 2 -42.732 -16.705 -15.283 1 81.64 ? O36 K1E 502 B 1 
HETATM 37 C C37 K1E . . . E 2 -41.495 -16.292 -15.917 1 81.84 ? C37 K1E 502 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           37 
#