data_6RG7
#
_model_server_result.job_id            n-lTs4xeFymnSmM7C2Z4yg 
_model_server_result.datetime_utc      '2024-11-13 00:19:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rg7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    6RG7 
#
_exptl.entry_id    6RG7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              451.442 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-(6-azanyl-9~{H}-purin-8-yl)prop-2-ynyl-methyl-amino]methyl]oxolane-3,4-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RG7 
_cell.length_a            62.948 
_cell.length_b            75.713 
_cell.length_c            118.148 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RG7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 1 2 
A,B,C,D 1 3 
A,B,C,D 1 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.948 0 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.948 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H21 N11 O3' 
_chem_comp.formula_weight    451.442 
_chem_comp.id                K2H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-(6-azanyl-9~{H}-purin-8-yl)prop-2-ynyl-methyl-amino]methyl]oxolane-3,4-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N6 C6 K2H sing 193 n n 
N7 C5 K2H sing 194 n y 
N7 C8 K2H doub 195 n y 
C6 C5 K2H doub 196 n y 
C6 N1 K2H sing 197 n y 
C5 C4 K2H sing 198 n y 
C8 N9 K2H sing 199 n y 
CBF OBG K2H sing 200 n n 
CBF CBD K2H sing 201 n n 
CBF CAK K2H sing 202 n n 
N1 C2 K2H doub 203 n y 
OBE CBD K2H sing 204 n n 
C4 N9 K2H sing 205 n y 
C4 N3 K2H doub 206 n y 
N9 CAK K2H sing 207 n n 
CBD CAM K2H sing 208 n n 
C2 N3 K2H sing 209 n y 
CAK OAL K2H sing 210 n n 
OAL CAM K2H sing 211 n n 
CAM CAN K2H sing 212 n n 
CAN NAO K2H sing 213 n n 
NBB CAY K2H sing 214 n n 
CAY NAX K2H doub 215 n y 
CAY CAZ K2H sing 216 n y 
NAO CBC K2H sing 217 n n 
NAO CAP K2H sing 218 n n 
NBA CAZ K2H sing 219 n y 
NBA CAS K2H doub 220 n y 
NAX CAW K2H sing 221 n y 
CAZ CAU K2H doub 222 n y 
CAS CAR K2H sing 223 n n 
CAS NAT K2H sing 224 n y 
CAR CAQ K2H trip 225 n n 
CAQ CAP K2H sing 226 n n 
CAW NAV K2H doub 227 n y 
CAU NAT K2H sing 228 n y 
CAU NAV K2H sing 229 n y 
C2 H1 K2H sing 230 n n 
C8 H2 K2H sing 231 n n 
CAK H3 K2H sing 232 n n 
CAM H4 K2H sing 233 n n 
CAN H5 K2H sing 234 n n 
CAN H6 K2H sing 235 n n 
CAP H7 K2H sing 236 n n 
CAP H8 K2H sing 237 n n 
CAW H9 K2H sing 238 n n 
CBC H10 K2H sing 239 n n 
CBC H11 K2H sing 240 n n 
CBC H12 K2H sing 241 n n 
CBD H13 K2H sing 242 n n 
CBF H14 K2H sing 243 n n 
N6 H15 K2H sing 244 n n 
N6 H16 K2H sing 245 n n 
NAT H18 K2H sing 246 n n 
NBB H20 K2H sing 247 n n 
NBB H21 K2H sing 248 n n 
OBE H22 K2H sing 249 n n 
OBG H23 K2H sing 250 n n 
#
_atom_sites.entry_id                     6RG7 
_atom_sites.fract_transf_matrix[1][1]    0.015886 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013208 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008464 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CIT A 1 301 1 CIT CIT . 
C 3 K2H A 1 302 1 K2H PDB . 
D 4 HOH A 1 401 16 HOH HOH . 
D 4 HOH A 2 402 68 HOH HOH . 
D 4 HOH A 3 403 45 HOH HOH . 
D 4 HOH A 4 404 29 HOH HOH . 
D 4 HOH A 5 405 75 HOH HOH . 
D 4 HOH A 6 406 22 HOH HOH . 
D 4 HOH A 7 407 61 HOH HOH . 
D 4 HOH A 8 408 139 HOH HOH . 
D 4 HOH A 9 409 39 HOH HOH . 
D 4 HOH A 10 410 15 HOH HOH . 
D 4 HOH A 11 411 26 HOH HOH . 
D 4 HOH A 12 412 67 HOH HOH . 
D 4 HOH A 13 413 34 HOH HOH . 
D 4 HOH A 14 414 11 HOH HOH . 
D 4 HOH A 15 415 48 HOH HOH . 
D 4 HOH A 16 416 32 HOH HOH . 
D 4 HOH A 17 417 111 HOH HOH . 
D 4 HOH A 18 418 1 HOH HOH . 
D 4 HOH A 19 419 121 HOH HOH . 
D 4 HOH A 20 420 64 HOH HOH . 
D 4 HOH A 21 421 30 HOH HOH . 
D 4 HOH A 22 422 2 HOH HOH . 
D 4 HOH A 23 423 3 HOH HOH . 
D 4 HOH A 24 424 73 HOH HOH . 
D 4 HOH A 25 425 12 HOH HOH . 
D 4 HOH A 26 426 14 HOH HOH . 
D 4 HOH A 27 427 21 HOH HOH . 
D 4 HOH A 28 428 28 HOH HOH . 
D 4 HOH A 29 429 19 HOH HOH . 
D 4 HOH A 30 430 10 HOH HOH . 
D 4 HOH A 31 431 86 HOH HOH . 
D 4 HOH A 32 432 4 HOH HOH . 
D 4 HOH A 33 433 6 HOH HOH . 
D 4 HOH A 34 434 101 HOH HOH . 
D 4 HOH A 35 435 18 HOH HOH . 
D 4 HOH A 36 436 25 HOH HOH . 
D 4 HOH A 37 437 69 HOH HOH . 
D 4 HOH A 38 438 23 HOH HOH . 
D 4 HOH A 39 439 60 HOH HOH . 
D 4 HOH A 40 440 7 HOH HOH . 
D 4 HOH A 41 441 46 HOH HOH . 
D 4 HOH A 42 442 5 HOH HOH . 
D 4 HOH A 43 443 13 HOH HOH . 
D 4 HOH A 44 444 9 HOH HOH . 
D 4 HOH A 45 445 47 HOH HOH . 
D 4 HOH A 46 446 42 HOH HOH . 
D 4 HOH A 47 447 95 HOH HOH . 
D 4 HOH A 48 448 38 HOH HOH . 
D 4 HOH A 49 449 125 HOH HOH . 
D 4 HOH A 50 450 36 HOH HOH . 
D 4 HOH A 51 451 72 HOH HOH . 
D 4 HOH A 52 452 66 HOH HOH . 
D 4 HOH A 53 453 99 HOH HOH . 
D 4 HOH A 54 454 41 HOH HOH . 
D 4 HOH A 55 455 24 HOH HOH . 
D 4 HOH A 56 456 17 HOH HOH . 
D 4 HOH A 57 457 54 HOH HOH . 
D 4 HOH A 58 458 81 HOH HOH . 
D 4 HOH A 59 459 62 HOH HOH . 
D 4 HOH A 60 460 20 HOH HOH . 
D 4 HOH A 61 461 33 HOH HOH . 
D 4 HOH A 62 462 129 HOH HOH . 
D 4 HOH A 63 463 37 HOH HOH . 
D 4 HOH A 64 464 146 HOH HOH . 
D 4 HOH A 65 465 90 HOH HOH . 
D 4 HOH A 66 466 71 HOH HOH . 
D 4 HOH A 67 467 57 HOH HOH . 
D 4 HOH A 68 468 105 HOH HOH . 
D 4 HOH A 69 469 100 HOH HOH . 
D 4 HOH A 70 470 8 HOH HOH . 
D 4 HOH A 71 471 92 HOH HOH . 
D 4 HOH A 72 472 56 HOH HOH . 
D 4 HOH A 73 473 35 HOH HOH . 
D 4 HOH A 74 474 98 HOH HOH . 
D 4 HOH A 75 475 93 HOH HOH . 
D 4 HOH A 76 476 103 HOH HOH . 
D 4 HOH A 77 477 58 HOH HOH . 
D 4 HOH A 78 478 80 HOH HOH . 
D 4 HOH A 79 479 141 HOH HOH . 
D 4 HOH A 80 480 102 HOH HOH . 
D 4 HOH A 81 481 131 HOH HOH . 
D 4 HOH A 82 482 127 HOH HOH . 
D 4 HOH A 83 483 91 HOH HOH . 
D 4 HOH A 84 484 97 HOH HOH . 
D 4 HOH A 85 485 31 HOH HOH . 
D 4 HOH A 86 486 40 HOH HOH . 
D 4 HOH A 87 487 51 HOH HOH . 
D 4 HOH A 88 488 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 K2H . . . C 3 19.935 5.507 8.576 1 35.82 ? C2 K2H 302 A 1 
HETATM 2 C C4 K2H . . . C 3 17.845 6.378 8.245 1 37.8 ? C4 K2H 302 A 1 
HETATM 3 C C5 K2H . . . C 3 17.49 5.257 7.536 1 37.49 ? C5 K2H 302 A 1 
HETATM 4 C C6 K2H . . . C 3 18.428 4.256 7.366 1 35.94 ? C6 K2H 302 A 1 
HETATM 5 N N9 K2H . . . C 3 16.8 7.179 8.274 1 38.76 ? N9 K2H 302 A 1 
HETATM 6 C C8 K2H . . . C 3 15.813 6.596 7.604 1 37.72 ? C8 K2H 302 A 1 
HETATM 7 C CAK K2H . . . C 3 16.761 8.479 8.934 1 38.58 ? CAK K2H 302 A 1 
HETATM 8 C CAM K2H . . . C 3 15.257 9.914 9.809 1 38.9 ? CAM K2H 302 A 1 
HETATM 9 C CAN K2H . . . C 3 13.839 10.123 10.401 1 40.28 ? CAN K2H 302 A 1 
HETATM 10 C CAP K2H . . . C 3 14.11 10.944 12.73 1 41.01 ? CAP K2H 302 A 1 
HETATM 11 C CAQ K2H . . . C 3 15.555 11.194 12.678 1 37.73 ? CAQ K2H 302 A 1 
HETATM 12 C CAR K2H . . . C 3 16.749 11.391 12.635 1 34.38 ? CAR K2H 302 A 1 
HETATM 13 C CAS K2H . . . C 3 18.155 11.6 12.596 1 30.47 ? CAS K2H 302 A 1 
HETATM 14 C CAU K2H . . . C 3 20.25 11.301 12.919 1 29.95 ? CAU K2H 302 A 1 
HETATM 15 C CAW K2H . . . C 3 22.519 11.61 12.857 1 27.79 ? CAW K2H 302 A 1 
HETATM 16 C CAY K2H . . . C 3 21.192 13.164 11.796 1 29.83 ? CAY K2H 302 A 1 
HETATM 17 C CAZ K2H . . . C 3 20.075 12.448 12.181 1 30.19 ? CAZ K2H 302 A 1 
HETATM 18 C CBC K2H . . . C 3 14.473 8.593 12.215 1 40.7 ? CBC K2H 302 A 1 
HETATM 19 C CBD K2H . . . C 3 15.293 10.263 8.323 1 36.59 ? CBD K2H 302 A 1 
HETATM 20 C CBF K2H . . . C 3 16.551 9.537 7.861 1 37.28 ? CBF K2H 302 A 1 
HETATM 21 N N1 K2H . . . C 3 19.637 4.422 7.899 1 35.56 ? N1 K2H 302 A 1 
HETATM 22 N N3 K2H . . . C 3 19.068 6.479 8.749 1 36.51 ? N3 K2H 302 A 1 
HETATM 23 N N6 K2H . . . C 3 18.149 3.152 6.69 1 34.72 ? N6 K2H 302 A 1 
HETATM 24 N N7 K2H . . . C 3 16.235 5.421 7.154 1 38.08 ? N7 K2H 302 A 1 
HETATM 25 N NAO K2H . . . C 3 13.729 9.808 11.849 1 42.1 ? NAO K2H 302 A 1 
HETATM 26 N NAT K2H . . . C 3 19.052 10.802 13.155 1 30.01 ? NAT K2H 302 A 1 
HETATM 27 N NAV K2H . . . C 3 21.479 10.904 13.239 1 27.34 ? NAV K2H 302 A 1 
HETATM 28 N NAX K2H . . . C 3 22.394 12.714 12.152 1 28.83 ? NAX K2H 302 A 1 
HETATM 29 N NBA K2H . . . C 3 18.775 12.609 12 1 30.66 ? NBA K2H 302 A 1 
HETATM 30 N NBB K2H . . . C 3 21.077 14.274 11.09 1 30.17 ? NBB K2H 302 A 1 
HETATM 31 O OAL K2H . . . C 3 15.605 8.542 9.762 1 39.26 ? OAL K2H 302 A 1 
HETATM 32 O OBE K2H . . . C 3 15.439 11.663 8.13 1 34.45 ? OBE K2H 302 A 1 
HETATM 33 O OBG K2H . . . C 3 17.665 10.418 7.874 1 40.99 ? OBG K2H 302 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           33 
#