data_6RG8 # _model_server_result.job_id ERs5til11tyW-UuU5QT6eA _model_server_result.datetime_utc '2024-11-13 00:30:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6RG8 # _exptl.entry_id 6RG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.442 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[4-(6-azanyl-9~{H}-purin-8-yl)but-3-ynylamino]methyl]oxolane-3,4-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RG8 _cell.length_a 63.047 _cell.length_b 76.672 _cell.length_c 119.162 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 A,B,C,D 1 3 A,B,C,D 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.047 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.047 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H21 N11 O3' _chem_comp.formula_weight 451.442 _chem_comp.id K2K _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[4-(6-azanyl-9~{H}-purin-8-yl)but-3-ynylamino]methyl]oxolane-3,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 C6 K2K sing 193 n n N7 C8 K2K doub 194 n y N7 C5 K2K sing 195 n y C6 C5 K2K doub 196 n y C6 N1 K2K sing 197 n y OBF CAM K2K sing 198 n n C8 N9 K2K sing 199 n y C5 C4 K2K sing 200 n y CAM CAL K2K sing 201 n n CAM CAN K2K sing 202 n n CAL OBG K2K sing 203 n n CAL CAK K2K sing 204 n n N1 C2 K2K doub 205 n y N9 C4 K2K sing 206 n y N9 CAK K2K sing 207 n n C4 N3 K2K doub 208 n y C2 N3 K2K sing 209 n y CAK OAO K2K sing 210 n n CAN OAO K2K sing 211 n n CAN CAP K2K sing 212 n n CAP NAQ K2K sing 213 n n NBE CBB K2K sing 214 n n NAQ CAR K2K sing 215 n n CBB NBA K2K doub 216 n y CBB CBC K2K sing 217 n y NBA CAZ K2K sing 218 n y NBD CBC K2K sing 219 n y NBD CAV K2K doub 220 n y CBC CAX K2K doub 221 n y CAR CAS K2K sing 222 n n CAZ NAY K2K doub 223 n y CAV CAU K2K sing 224 n n CAV NAW K2K sing 225 n y CAX NAY K2K sing 226 n y CAX NAW K2K sing 227 n y CAU CAT K2K trip 228 n n CAT CAS K2K sing 229 n n C2 H1 K2K sing 230 n n C8 H2 K2K sing 231 n n CAK H3 K2K sing 232 n n CAL H4 K2K sing 233 n n CAM H5 K2K sing 234 n n CAN H6 K2K sing 235 n n CAP H7 K2K sing 236 n n CAP H8 K2K sing 237 n n CAR H9 K2K sing 238 n n CAR H10 K2K sing 239 n n CAS H11 K2K sing 240 n n CAS H12 K2K sing 241 n n CAZ H13 K2K sing 242 n n N6 H14 K2K sing 243 n n N6 H15 K2K sing 244 n n NAQ H16 K2K sing 245 n n NAW H18 K2K sing 246 n n NBE H20 K2K sing 247 n n NBE H21 K2K sing 248 n n OBF H22 K2K sing 249 n n OBG H23 K2K sing 250 n n # _atom_sites.entry_id 6RG8 _atom_sites.fract_transf_matrix[1][1] 0.015861 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013043 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K2K A 1 301 1 K2K PDB . C 3 CIT A 1 302 1 CIT CIT . D 4 HOH A 1 401 146 HOH HOH . D 4 HOH A 2 402 140 HOH HOH . D 4 HOH A 3 403 20 HOH HOH . D 4 HOH A 4 404 145 HOH HOH . D 4 HOH A 5 405 25 HOH HOH . D 4 HOH A 6 406 34 HOH HOH . D 4 HOH A 7 407 24 HOH HOH . D 4 HOH A 8 408 1 HOH HOH . D 4 HOH A 9 409 86 HOH HOH . D 4 HOH A 10 410 4 HOH HOH . D 4 HOH A 11 411 18 HOH HOH . D 4 HOH A 12 412 21 HOH HOH . D 4 HOH A 13 413 17 HOH HOH . D 4 HOH A 14 414 48 HOH HOH . D 4 HOH A 15 415 2 HOH HOH . D 4 HOH A 16 416 144 HOH HOH . D 4 HOH A 17 417 128 HOH HOH . D 4 HOH A 18 418 7 HOH HOH . D 4 HOH A 19 419 137 HOH HOH . D 4 HOH A 20 420 134 HOH HOH . D 4 HOH A 21 421 30 HOH HOH . D 4 HOH A 22 422 148 HOH HOH . D 4 HOH A 23 423 6 HOH HOH . D 4 HOH A 24 424 53 HOH HOH . D 4 HOH A 25 425 19 HOH HOH . D 4 HOH A 26 426 29 HOH HOH . D 4 HOH A 27 427 10 HOH HOH . D 4 HOH A 28 428 28 HOH HOH . D 4 HOH A 29 429 130 HOH HOH . D 4 HOH A 30 430 9 HOH HOH . D 4 HOH A 31 431 136 HOH HOH . D 4 HOH A 32 432 141 HOH HOH . D 4 HOH A 33 433 139 HOH HOH . D 4 HOH A 34 434 57 HOH HOH . D 4 HOH A 35 435 125 HOH HOH . D 4 HOH A 36 436 101 HOH HOH . D 4 HOH A 37 437 33 HOH HOH . D 4 HOH A 38 438 138 HOH HOH . D 4 HOH A 39 439 98 HOH HOH . D 4 HOH A 40 440 143 HOH HOH . D 4 HOH A 41 441 51 HOH HOH . D 4 HOH A 42 442 5 HOH HOH . D 4 HOH A 43 443 82 HOH HOH . D 4 HOH A 44 444 147 HOH HOH . D 4 HOH A 45 445 132 HOH HOH . D 4 HOH A 46 446 142 HOH HOH . D 4 HOH A 47 447 149 HOH HOH . D 4 HOH A 48 448 32 HOH HOH . D 4 HOH A 49 449 133 HOH HOH . D 4 HOH A 50 450 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 K2K . . . B 2 19.978 5.361 8.575 1 58.32 ? C2 K2K 301 A 1 HETATM 2 C C4 K2K . . . B 2 17.857 6.195 8.209 1 64.55 ? C4 K2K 301 A 1 HETATM 3 C C5 K2K . . . B 2 17.471 5.009 7.615 1 65.69 ? C5 K2K 301 A 1 HETATM 4 C C6 K2K . . . B 2 18.424 3.99 7.521 1 61.17 ? C6 K2K 301 A 1 HETATM 5 N N9 K2K . . . B 2 16.816 7.014 8.207 1 65.91 ? N9 K2K 301 A 1 HETATM 6 C C8 K2K . . . B 2 15.787 6.396 7.605 1 66.47 ? C8 K2K 301 A 1 HETATM 7 C CAK K2K . . . B 2 16.986 8.382 8.762 1 64.7 ? CAK K2K 301 A 1 HETATM 8 C CAL K2K . . . B 2 16.772 9.695 8.005 1 67.1 ? CAL K2K 301 A 1 HETATM 9 C CAM K2K . . . B 2 15.284 9.832 7.898 1 65.17 ? CAM K2K 301 A 1 HETATM 10 C CAN K2K . . . B 2 15.206 9.754 9.414 1 65.67 ? CAN K2K 301 A 1 HETATM 11 C CAP K2K . . . B 2 13.862 9.927 10.165 1 66.08 ? CAP K2K 301 A 1 HETATM 12 C CAR K2K . . . B 2 13.467 10.506 12.565 1 63.63 ? CAR K2K 301 A 1 HETATM 13 C CAS K2K . . . B 2 14.343 10.391 13.815 1 60.62 ? CAS K2K 301 A 1 HETATM 14 C CAT K2K . . . B 2 15.658 10.966 13.461 1 60.42 ? CAT K2K 301 A 1 HETATM 15 C CAU K2K . . . B 2 16.821 11.342 13.178 1 57.35 ? CAU K2K 301 A 1 HETATM 16 C CAV K2K . . . B 2 18.203 11.666 12.929 1 48.44 ? CAV K2K 301 A 1 HETATM 17 C CAX K2K . . . B 2 20.354 11.473 12.998 1 45.2 ? CAX K2K 301 A 1 HETATM 18 C CAZ K2K . . . B 2 22.602 11.874 12.676 1 43.29 ? CAZ K2K 301 A 1 HETATM 19 C CBB K2K . . . B 2 21.087 13.376 11.77 1 40.44 ? CBB K2K 301 A 1 HETATM 20 C CBC K2K . . . B 2 20.039 12.616 12.285 1 44.68 ? CBC K2K 301 A 1 HETATM 21 N N1 K2K . . . B 2 19.659 4.207 8.011 1 60.12 ? N1 K2K 301 A 1 HETATM 22 N N3 K2K . . . B 2 19.104 6.348 8.681 1 58.11 ? N3 K2K 301 A 1 HETATM 23 N N6 K2K . . . B 2 18.134 2.812 6.964 1 57.71 ? N6 K2K 301 A 1 HETATM 24 N N7 K2K . . . B 2 16.187 5.163 7.253 1 66.57 ? N7 K2K 301 A 1 HETATM 25 N NAQ K2K . . . B 2 14.32 9.874 11.554 1 67.5 ? NAQ K2K 301 A 1 HETATM 26 N NAW K2K . . . B 2 19.213 10.918 13.376 1 46.28 ? NAW K2K 301 A 1 HETATM 27 N NAY K2K . . . B 2 21.633 11.127 13.181 1 43.45 ? NAY K2K 301 A 1 HETATM 28 N NBA K2K . . . B 2 22.351 12.977 11.985 1 41.45 ? NBA K2K 301 A 1 HETATM 29 N NBD K2K . . . B 2 18.705 12.713 12.263 1 46.63 ? NBD K2K 301 A 1 HETATM 30 N NBE K2K . . . B 2 20.859 14.487 11.077 1 38.47 ? NBE K2K 301 A 1 HETATM 31 O OAO K2K . . . B 2 15.71 8.367 9.514 1 64.17 ? OAO K2K 301 A 1 HETATM 32 O OBF K2K . . . B 2 15.02 11.182 7.533 1 63.87 ? OBF K2K 301 A 1 HETATM 33 O OBG K2K . . . B 2 17.346 10.806 8.71 1 74.15 ? OBG K2K 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #