data_6RGE
#
_model_server_result.job_id            g6rkIgLws-icyxg1Fn62kw 
_model_server_result.datetime_utc      '2024-10-19 23:54:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rge 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    6RGE 
#
_exptl.entry_id    6RGE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              650.495 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R},3~{R},4~{R},5~{R})-2-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl] dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RGE 
_cell.length_a            63.08 
_cell.length_b            75.22 
_cell.length_c            118.28 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RGE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 1 2 
A,B,C,D 1 3 
A,B,C,D 1 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.08 0 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.08 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H27 N10 O11 P' 
_chem_comp.formula_weight    650.495 
_chem_comp.id                K1Z 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R},3~{R},4~{R},5~{R})-2-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl] dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C K1Z sing 193 n n 
N4 C4 K1Z sing 194 n y 
N4 C3 K1Z doub 195 n y 
C C4 K1Z doub 196 n y 
C N1 K1Z sing 197 n y 
C4 C2 K1Z sing 198 n y 
C3 N3 K1Z sing 199 n y 
C22 O10 K1Z sing 200 n n 
C22 C21 K1Z sing 201 n n 
C22 C5 K1Z sing 202 n n 
N1 C1 K1Z doub 203 n y 
O9 C21 K1Z sing 204 n n 
C21 C6 K1Z sing 205 n n 
C2 N3 K1Z sing 206 n y 
C2 N2 K1Z doub 207 n y 
N3 C5 K1Z sing 208 n n 
C1 N2 K1Z sing 209 n y 
C5 O K1Z sing 210 n n 
C6 O K1Z sing 211 n n 
C6 C7 K1Z sing 212 n n 
C7 O1 K1Z sing 213 n n 
N6 C13 K1Z sing 214 n n 
O3 C18 K1Z sing 215 n n 
O1 C8 K1Z sing 216 n n 
C13 N7 K1Z doub 217 n y 
C13 C12 K1Z sing 218 n y 
N7 C14 K1Z sing 219 n y 
N5 C12 K1Z sing 220 n y 
N5 C11 K1Z doub 221 n y 
C12 C15 K1Z doub 222 n y 
C8 C9 K1Z sing 223 n n 
C9 C10 K1Z trip 224 n n 
C10 C11 K1Z sing 225 n n 
C11 N9 K1Z sing 226 n y 
C14 N8 K1Z doub 227 n y 
C18 C17 K1Z sing 228 n n 
C15 N9 K1Z sing 229 n y 
C15 N8 K1Z sing 230 n y 
O2 C17 K1Z sing 231 n n 
O2 C16 K1Z sing 232 n n 
N9 C16 K1Z sing 233 n n 
C17 C19 K1Z sing 234 n n 
C16 C20 K1Z sing 235 n n 
C20 C19 K1Z sing 236 n n 
C20 O5 K1Z sing 237 n n 
C19 O4 K1Z sing 238 n n 
O5 P K1Z sing 239 n n 
O6 P K1Z doub 240 n n 
P O8 K1Z sing 241 n n 
P O7 K1Z sing 242 n n 
O3 H1 K1Z sing 243 n n 
C5 H2 K1Z sing 244 n n 
O4 H3 K1Z sing 245 n n 
C6 H4 K1Z sing 246 n n 
C7 H5 K1Z sing 247 n n 
C7 H6 K1Z sing 248 n n 
C8 H7 K1Z sing 249 n n 
C8 H8 K1Z sing 250 n n 
O7 H9 K1Z sing 251 n n 
C14 H10 K1Z sing 252 n n 
O8 H11 K1Z sing 253 n n 
N H12 K1Z sing 254 n n 
N H13 K1Z sing 255 n n 
C1 H14 K1Z sing 256 n n 
C16 H15 K1Z sing 257 n n 
C17 H16 K1Z sing 258 n n 
C18 H17 K1Z sing 259 n n 
C18 H18 K1Z sing 260 n n 
C19 H19 K1Z sing 261 n n 
C20 H20 K1Z sing 262 n n 
C21 H21 K1Z sing 263 n n 
C22 H22 K1Z sing 264 n n 
C3 H23 K1Z sing 265 n n 
N6 H24 K1Z sing 266 n n 
N6 H25 K1Z sing 267 n n 
O10 H26 K1Z sing 268 n n 
O9 H27 K1Z sing 269 n n 
#
_atom_sites.entry_id                     6RGE 
_atom_sites.fract_transf_matrix[1][1]    0.015853 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013294 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008455 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CIT A 1 301 265 CIT CIT . 
C 3 K1Z A 1 302 1 K1Z XXX . 
D 4 HOH A 1 401 102 HOH HOH . 
D 4 HOH A 2 402 62 HOH HOH . 
D 4 HOH A 3 403 6 HOH HOH . 
D 4 HOH A 4 404 69 HOH HOH . 
D 4 HOH A 5 405 45 HOH HOH . 
D 4 HOH A 6 406 81 HOH HOH . 
D 4 HOH A 7 407 38 HOH HOH . 
D 4 HOH A 8 408 35 HOH HOH . 
D 4 HOH A 9 409 14 HOH HOH . 
D 4 HOH A 10 410 36 HOH HOH . 
D 4 HOH A 11 411 47 HOH HOH . 
D 4 HOH A 12 412 74 HOH HOH . 
D 4 HOH A 13 413 13 HOH HOH . 
D 4 HOH A 14 414 79 HOH HOH . 
D 4 HOH A 15 415 1 HOH HOH . 
D 4 HOH A 16 416 12 HOH HOH . 
D 4 HOH A 17 417 5 HOH HOH . 
D 4 HOH A 18 418 21 HOH HOH . 
D 4 HOH A 19 419 98 HOH HOH . 
D 4 HOH A 20 420 3 HOH HOH . 
D 4 HOH A 21 421 27 HOH HOH . 
D 4 HOH A 22 422 7 HOH HOH . 
D 4 HOH A 23 423 24 HOH HOH . 
D 4 HOH A 24 424 99 HOH HOH . 
D 4 HOH A 25 425 4 HOH HOH . 
D 4 HOH A 26 426 84 HOH HOH . 
D 4 HOH A 27 427 11 HOH HOH . 
D 4 HOH A 28 428 15 HOH HOH . 
D 4 HOH A 29 429 8 HOH HOH . 
D 4 HOH A 30 430 2 HOH HOH . 
D 4 HOH A 31 431 20 HOH HOH . 
D 4 HOH A 32 432 29 HOH HOH . 
D 4 HOH A 33 433 63 HOH HOH . 
D 4 HOH A 34 434 68 HOH HOH . 
D 4 HOH A 35 435 57 HOH HOH . 
D 4 HOH A 36 436 42 HOH HOH . 
D 4 HOH A 37 437 44 HOH HOH . 
D 4 HOH A 38 438 18 HOH HOH . 
D 4 HOH A 39 439 25 HOH HOH . 
D 4 HOH A 40 440 33 HOH HOH . 
D 4 HOH A 41 441 37 HOH HOH . 
D 4 HOH A 42 442 92 HOH HOH . 
D 4 HOH A 43 443 23 HOH HOH . 
D 4 HOH A 44 444 87 HOH HOH . 
D 4 HOH A 45 445 28 HOH HOH . 
D 4 HOH A 46 446 46 HOH HOH . 
D 4 HOH A 47 447 66 HOH HOH . 
D 4 HOH A 48 448 70 HOH HOH . 
D 4 HOH A 49 449 49 HOH HOH . 
D 4 HOH A 50 450 54 HOH HOH . 
D 4 HOH A 51 451 9 HOH HOH . 
D 4 HOH A 52 452 78 HOH HOH . 
D 4 HOH A 53 453 43 HOH HOH . 
D 4 HOH A 54 454 53 HOH HOH . 
D 4 HOH A 55 455 55 HOH HOH . 
D 4 HOH A 56 456 16 HOH HOH . 
D 4 HOH A 57 457 65 HOH HOH . 
D 4 HOH A 58 458 40 HOH HOH . 
D 4 HOH A 59 459 17 HOH HOH . 
D 4 HOH A 60 460 77 HOH HOH . 
D 4 HOH A 61 461 73 HOH HOH . 
D 4 HOH A 62 462 32 HOH HOH . 
D 4 HOH A 63 463 51 HOH HOH . 
D 4 HOH A 64 464 19 HOH HOH . 
D 4 HOH A 65 465 26 HOH HOH . 
D 4 HOH A 66 466 10 HOH HOH . 
D 4 HOH A 67 467 95 HOH HOH . 
D 4 HOH A 68 468 91 HOH HOH . 
D 4 HOH A 69 469 39 HOH HOH . 
D 4 HOH A 70 470 100 HOH HOH . 
D 4 HOH A 71 471 52 HOH HOH . 
D 4 HOH A 72 472 22 HOH HOH . 
D 4 HOH A 73 473 101 HOH HOH . 
D 4 HOH A 74 474 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 K1Z . . . C 3 16.379 6.874 11.624 1 44.79 ? O3 K1Z 302 A 1 
HETATM 2 C C4 K1Z . . . C 3 17.495 5.197 7.539 1 21.45 ? C4 K1Z 302 A 1 
HETATM 3 C C5 K1Z . . . C 3 16.82 8.509 8.849 1 19.62 ? C5 K1Z 302 A 1 
HETATM 4 O O4 K1Z . . . C 3 18.625 7.258 15.846 1 37.23 ? O4 K1Z 302 A 1 
HETATM 5 C C6 K1Z . . . C 3 15.266 9.981 9.69 1 21.55 ? C6 K1Z 302 A 1 
HETATM 6 N N1 K1Z . . . C 3 19.685 4.361 7.813 1 18.65 ? N1 K1Z 302 A 1 
HETATM 7 C C7 K1Z . . . C 3 13.881 10.085 10.281 1 23.62 ? C7 K1Z 302 A 1 
HETATM 8 C C8 K1Z . . . C 3 14.033 10.813 12.58 1 24.07 ? C8 K1Z 302 A 1 
HETATM 9 N N2 K1Z . . . C 3 19.149 6.522 8.734 1 20.2 ? N2 K1Z 302 A 1 
HETATM 10 C C9 K1Z . . . C 3 15.453 11.156 12.683 1 21.92 ? C9 K1Z 302 A 1 
HETATM 11 O O5 K1Z . . . C 3 18.106 9.773 16.313 1 35.84 ? O5 K1Z 302 A 1 
HETATM 12 C C10 K1Z . . . C 3 16.62 11.389 12.72 1 19.89 ? C10 K1Z 302 A 1 
HETATM 13 O O6 K1Z . . . C 3 15.811 10.543 17.055 0.7 33.68 ? O6 K1Z 302 A 1 
HETATM 14 C C11 K1Z . . . C 3 18.033 11.564 12.739 1 18.86 ? C11 K1Z 302 A 1 
HETATM 15 C C12 K1Z . . . C 3 19.976 12.36 12.326 1 17.67 ? C12 K1Z 302 A 1 
HETATM 16 N N3 K1Z . . . C 3 16.845 7.161 8.291 1 22 ? N3 K1Z 302 A 1 
HETATM 17 C C13 K1Z . . . C 3 21.112 13.068 11.89 1 16.42 ? C13 K1Z 302 A 1 
HETATM 18 O O7 K1Z . . . C 3 17.86 11.066 18.435 0.7 29.82 ? O7 K1Z 302 A 1 
HETATM 19 C C14 K1Z . . . C 3 22.384 11.365 12.809 1 16.13 ? C14 K1Z 302 A 1 
HETATM 20 O O8 K1Z . . . C 3 17.012 8.692 18.279 0.7 42.17 ? O8 K1Z 302 A 1 
HETATM 21 C C15 K1Z . . . C 3 20.194 11.168 12.994 1 18.8 ? C15 K1Z 302 A 1 
HETATM 22 N N4 K1Z . . . C 3 16.161 5.332 7.174 1 22.44 ? N4 K1Z 302 A 1 
HETATM 23 N N K1Z . . . C 3 18.185 3.06 6.635 1 19.99 ? N K1Z 302 A 1 
HETATM 24 C C K1Z . . . C 3 18.441 4.178 7.319 1 20.11 ? C K1Z 302 A 1 
HETATM 25 O O K1Z . . . C 3 15.725 8.618 9.737 1 21.36 ? O K1Z 302 A 1 
HETATM 26 C C1 K1Z . . . C 3 19.955 5.49 8.473 1 19.89 ? C1 K1Z 302 A 1 
HETATM 27 C C16 K1Z . . . C 3 18.746 9.39 13.958 1 30.22 ? C16 K1Z 302 A 1 
HETATM 28 C C17 K1Z . . . C 3 17.587 7.391 13.658 1 37.07 ? C17 K1Z 302 A 1 
HETATM 29 C C18 K1Z . . . C 3 16.244 7.288 12.973 1 40.09 ? C18 K1Z 302 A 1 
HETATM 30 C C19 K1Z . . . C 3 17.52 7.798 15.131 1 36.85 ? C19 K1Z 302 A 1 
HETATM 31 C C2 K1Z . . . C 3 17.924 6.314 8.234 1 21.79 ? C2 K1Z 302 A 1 
HETATM 32 C C20 K1Z . . . C 3 17.653 9.314 15.021 1 34.54 ? C20 K1Z 302 A 1 
HETATM 33 C C21 K1Z . . . C 3 15.389 10.353 8.224 1 18.52 ? C21 K1Z 302 A 1 
HETATM 34 C C22 K1Z . . . C 3 16.671 9.62 7.794 1 16.64 ? C22 K1Z 302 A 1 
HETATM 35 C C3 K1Z . . . C 3 15.827 6.508 7.647 1 21.81 ? C3 K1Z 302 A 1 
HETATM 36 N N5 K1Z . . . C 3 18.618 12.607 12.177 1 16.88 ? N5 K1Z 302 A 1 
HETATM 37 N N6 K1Z . . . C 3 21.06 14.236 11.243 1 15.9 ? N6 K1Z 302 A 1 
HETATM 38 N N7 K1Z . . . C 3 22.324 12.526 12.147 1 17.55 ? N7 K1Z 302 A 1 
HETATM 39 N N8 K1Z . . . C 3 21.384 10.615 13.277 1 16.07 ? N8 K1Z 302 A 1 
HETATM 40 N N9 K1Z . . . C 3 18.939 10.653 13.265 1 23.02 ? N9 K1Z 302 A 1 
HETATM 41 O O1 K1Z . . . C 3 13.926 9.732 11.659 1 25.87 ? O1 K1Z 302 A 1 
HETATM 42 O O10 K1Z . . . C 3 17.799 10.488 7.809 1 17.37 ? O10 K1Z 302 A 1 
HETATM 43 O O2 K1Z . . . C 3 18.385 8.407 13.005 1 32.49 ? O2 K1Z 302 A 1 
HETATM 44 O O9 K1Z . . . C 3 15.508 11.763 8.072 1 18.48 ? O9 K1Z 302 A 1 
HETATM 45 P P K1Z . . . C 3 17.134 10.036 17.593 0.7 37.11 ? P K1Z 302 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           45 
#