data_6RGG # _model_server_result.job_id oClloAbg7m_mpACNxxWPng _model_server_result.datetime_utc '2024-11-02 06:24:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rgg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6RGG # _exptl.entry_id 6RGG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 208.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6-O-dimethyl-D-glucose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.35 _cell.angle_gamma 90 _cell.entry_id 6RGG _cell.length_a 68.304 _cell.length_b 89.347 _cell.length_c 68.401 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RGG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 K N N ? 2 L N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C1 K3Q . A K3Q 403 1_555 F O4 7CV . A 7CV 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 L C1 K3Q . B K3Q 402 1_555 M O4 7CV . B 7CV 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? metalc ? metalc1 A O ALA 30 A ALA 30 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc2 A OG SER 32 A SER 32 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc3 A OD1 ASN 89 A ASN 89 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? metalc ? metalc4 A OD1 ASN 136 A ASN 136 1_555 I NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? metalc ? metalc5 A O GLY 139 A GLY 139 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc6 A O GLY 187 A GLY 187 1_555 I NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc7 A OE1 GLN 205 A GLN 205 1_555 I NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc8 A O ALA 322 A ALA 322 1_555 J NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc9 A OG1 THR 324 A THR 324 1_555 J NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc10 B OD1 ASN 136 B ASN 136 1_555 P NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc11 B O GLY 187 B GLY 187 1_555 P NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? # _chem_comp.formula 'C8 H16 O6' _chem_comp.formula_weight 208.209 _chem_comp.id K3Q _chem_comp.mon_nstd_flag . _chem_comp.name 3,6-O-dimethyl-D-glucose _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 K3Q sing 198 n n C1 O5 K3Q sing 199 n n C1 C2 K3Q sing 200 n n O5 C5 K3Q sing 201 n n O2 C2 K3Q sing 202 n n C2 C3 K3Q sing 203 n n C5 C6 K3Q sing 204 n n C5 C4 K3Q sing 205 n n O6 C6 K3Q sing 206 n n O6 C8 K3Q sing 207 n n C3 C4 K3Q sing 208 n n C3 O3 K3Q sing 209 n n C4 O4 K3Q sing 210 n n O3 C7 K3Q sing 211 n n C1 H1 K3Q sing 212 n n O1 H2 K3Q sing 213 n n C2 H3 K3Q sing 214 n n O2 H4 K3Q sing 215 n n C5 H5 K3Q sing 216 n n C4 H6 K3Q sing 217 n n O4 H7 K3Q sing 218 n n C3 H8 K3Q sing 219 n n C6 H9 K3Q sing 220 n n C6 H10 K3Q sing 221 n n C7 H11 K3Q sing 222 n n C7 H12 K3Q sing 223 n n C7 H13 K3Q sing 224 n n C8 H14 K3Q sing 225 n n C8 H15 K3Q sing 226 n n C8 H16 K3Q sing 227 n n # _atom_sites.entry_id 6RGG _atom_sites.fract_transf_matrix[1][1] 0.01464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002938 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K3Q A 1 401 910 K3Q 3G6 . D 2 K3Q A 1 402 950 K3Q 3G6 . E 2 K3Q A 1 403 960 K3Q 3G6 . F 3 7CV A 1 404 961 7CV R2M . G 4 NA A 1 405 991 NA NA . H 4 NA A 1 406 992 NA NA . I 4 NA A 1 407 993 NA NA . J 4 NA A 1 408 994 NA NA . K 2 K3Q B 1 401 910 K3Q 3G6 . L 2 K3Q B 1 402 920 K3Q 3G6 . M 3 7CV B 1 403 921 7CV R2M . N 5 EDO B 1 404 930 EDO EDO . O 2 K3Q B 1 405 940 K3Q 3G6 . P 4 NA B 1 406 991 NA NA . Q 6 HOH A 1 501 13 HOH HOH . Q 6 HOH A 2 502 8 HOH HOH . Q 6 HOH A 3 503 6 HOH HOH . Q 6 HOH A 4 504 9 HOH HOH . Q 6 HOH A 5 505 1 HOH HOH . Q 6 HOH A 6 506 2 HOH HOH . Q 6 HOH A 7 507 7 HOH HOH . Q 6 HOH A 8 508 10 HOH HOH . Q 6 HOH A 9 509 12 HOH HOH . Q 6 HOH A 10 510 5 HOH HOH . R 6 HOH B 1 501 15 HOH HOH . R 6 HOH B 2 502 16 HOH HOH . R 6 HOH B 3 503 11 HOH HOH . R 6 HOH B 4 504 14 HOH HOH . R 6 HOH B 5 505 4 HOH HOH . R 6 HOH B 6 506 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K3Q . . . D 2 -31.595 18.573 48.975 1 102.84 ? C1 K3Q 402 A 1 HETATM 2 O O1 K3Q . . . D 2 -30.691 19.532 49.577 1 94 ? O1 K3Q 402 A 1 HETATM 3 C C2 K3Q . . . D 2 -30.96 17.199 48.732 1 96.1 ? C2 K3Q 402 A 1 HETATM 4 O O2 K3Q . . . D 2 -29.762 17.346 47.96 1 99.79 ? O2 K3Q 402 A 1 HETATM 5 O O5 K3Q . . . D 2 -32.736 18.338 49.812 1 104.59 ? O5 K3Q 402 A 1 HETATM 6 C C5 K3Q . . . D 2 -33.758 17.585 49.149 1 104.01 ? C5 K3Q 402 A 1 HETATM 7 C C4 K3Q . . . D 2 -33.229 16.171 48.88 1 94.14 ? C4 K3Q 402 A 1 HETATM 8 O O4 K3Q . . . D 2 -34.204 15.349 48.213 1 85.54 ? O4 K3Q 402 A 1 HETATM 9 C C3 K3Q . . . D 2 -31.962 16.275 48.025 1 89.98 ? C3 K3Q 402 A 1 HETATM 10 O O3 K3Q . . . D 2 -31.429 14.966 47.772 1 74.58 ? O3 K3Q 402 A 1 HETATM 11 C C6 K3Q . . . D 2 -35.06 17.653 49.96 1 113.82 ? C6 K3Q 402 A 1 HETATM 12 O O6 K3Q . . . D 2 -36.121 18.203 49.146 1 126.63 ? O6 K3Q 402 A 1 HETATM 13 C C7 K3Q . . . D 2 -30.942 14.741 46.444 1 71.02 ? C7 K3Q 402 A 1 HETATM 14 C C8 K3Q . . . D 2 -37.102 18.996 49.833 1 125.31 ? C8 K3Q 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #