data_6RGG
#
_model_server_result.job_id            j_hT6T-DIHAZr795pFAM8Q 
_model_server_result.datetime_utc      '2024-11-02 06:26:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rgg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":405}' 
#
_entry.id    6RGG 
#
_exptl.entry_id    6RGG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              208.209 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3,6-O-dimethyl-D-glucose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.35 
_cell.angle_gamma         90 
_cell.entry_id            6RGG 
_cell.length_a            68.304 
_cell.length_b            89.347 
_cell.length_c            68.401 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RGG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 K N N 
? 2 L N N 
? 2 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E C1 K3Q . A K3Q 403 1_555 F O4 7CV . A 7CV 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 L C1 K3Q . B K3Q 402 1_555 M O4 7CV . B 7CV 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
metalc ? metalc1 A O ALA 30 A ALA 30 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc2 A OG SER 32 A SER 32 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? 
metalc ? metalc3 A OD1 ASN 89 A ASN 89 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? 
metalc ? metalc4 A OD1 ASN 136 A ASN 136 1_555 I NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? 
metalc ? metalc5 A O GLY 139 A GLY 139 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc6 A O GLY 187 A GLY 187 1_555 I NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc7 A OE1 GLN 205 A GLN 205 1_555 I NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? 
metalc ? metalc8 A O ALA 322 A ALA 322 1_555 J NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc9 A OG1 THR 324 A THR 324 1_555 J NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
metalc ? metalc10 B OD1 ASN 136 B ASN 136 1_555 P NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? 
metalc ? metalc11 B O GLY 187 B GLY 187 1_555 P NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
#
_chem_comp.formula           'C8 H16 O6' 
_chem_comp.formula_weight    208.209 
_chem_comp.id                K3Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3,6-O-dimethyl-D-glucose 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 K3Q sing 198 n n 
C1 O5 K3Q sing 199 n n 
C1 C2 K3Q sing 200 n n 
O5 C5 K3Q sing 201 n n 
O2 C2 K3Q sing 202 n n 
C2 C3 K3Q sing 203 n n 
C5 C6 K3Q sing 204 n n 
C5 C4 K3Q sing 205 n n 
O6 C6 K3Q sing 206 n n 
O6 C8 K3Q sing 207 n n 
C3 C4 K3Q sing 208 n n 
C3 O3 K3Q sing 209 n n 
C4 O4 K3Q sing 210 n n 
O3 C7 K3Q sing 211 n n 
C1 H1 K3Q sing 212 n n 
O1 H2 K3Q sing 213 n n 
C2 H3 K3Q sing 214 n n 
O2 H4 K3Q sing 215 n n 
C5 H5 K3Q sing 216 n n 
C4 H6 K3Q sing 217 n n 
O4 H7 K3Q sing 218 n n 
C3 H8 K3Q sing 219 n n 
C6 H9 K3Q sing 220 n n 
C6 H10 K3Q sing 221 n n 
C7 H11 K3Q sing 222 n n 
C7 H12 K3Q sing 223 n n 
C7 H13 K3Q sing 224 n n 
C8 H14 K3Q sing 225 n n 
C8 H15 K3Q sing 226 n n 
C8 H16 K3Q sing 227 n n 
#
_atom_sites.entry_id                     6RGG 
_atom_sites.fract_transf_matrix[1][1]    0.01464 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002938 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011192 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014911 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 K3Q A 1 401 910 K3Q 3G6 . 
D 2 K3Q A 1 402 950 K3Q 3G6 . 
E 2 K3Q A 1 403 960 K3Q 3G6 . 
F 3 7CV A 1 404 961 7CV R2M . 
G 4 NA A 1 405 991 NA NA . 
H 4 NA A 1 406 992 NA NA . 
I 4 NA A 1 407 993 NA NA . 
J 4 NA A 1 408 994 NA NA . 
K 2 K3Q B 1 401 910 K3Q 3G6 . 
L 2 K3Q B 1 402 920 K3Q 3G6 . 
M 3 7CV B 1 403 921 7CV R2M . 
N 5 EDO B 1 404 930 EDO EDO . 
O 2 K3Q B 1 405 940 K3Q 3G6 . 
P 4 NA B 1 406 991 NA NA . 
Q 6 HOH A 1 501 13 HOH HOH . 
Q 6 HOH A 2 502 8 HOH HOH . 
Q 6 HOH A 3 503 6 HOH HOH . 
Q 6 HOH A 4 504 9 HOH HOH . 
Q 6 HOH A 5 505 1 HOH HOH . 
Q 6 HOH A 6 506 2 HOH HOH . 
Q 6 HOH A 7 507 7 HOH HOH . 
Q 6 HOH A 8 508 10 HOH HOH . 
Q 6 HOH A 9 509 12 HOH HOH . 
Q 6 HOH A 10 510 5 HOH HOH . 
R 6 HOH B 1 501 15 HOH HOH . 
R 6 HOH B 2 502 16 HOH HOH . 
R 6 HOH B 3 503 11 HOH HOH . 
R 6 HOH B 4 504 14 HOH HOH . 
R 6 HOH B 5 505 4 HOH HOH . 
R 6 HOH B 6 506 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 K3Q . . . O 2 -10.193 18.805 -8.664 1 113.29 ? C1 K3Q 405 B 1 
HETATM 2 O O1 K3Q . . . O 2 -11.485 19.413 -8.79 1 118.75 ? O1 K3Q 405 B 1 
HETATM 3 C C2 K3Q . . . O 2 -9.078 19.849 -8.758 1 116.06 ? C2 K3Q 405 B 1 
HETATM 4 O O2 K3Q . . . O 2 -9.137 20.485 -10.041 1 121.85 ? O2 K3Q 405 B 1 
HETATM 5 O O5 K3Q . . . O 2 -10.131 18.187 -7.396 1 109.87 ? O5 K3Q 405 B 1 
HETATM 6 C C5 K3Q . . . O 2 -8.911 17.49 -7.201 1 104.85 ? C5 K3Q 405 B 1 
HETATM 7 C C4 K3Q . . . O 2 -7.687 18.398 -7.278 1 109.05 ? C4 K3Q 405 B 1 
HETATM 8 O O4 K3Q . . . O 2 -6.493 17.6 -7.146 1 94.12 ? O4 K3Q 405 B 1 
HETATM 9 C C3 K3Q . . . O 2 -7.691 19.231 -8.561 1 115.16 ? C3 K3Q 405 B 1 
HETATM 10 O O3 K3Q . . . O 2 -6.683 20.256 -8.484 1 118.19 ? O3 K3Q 405 B 1 
HETATM 11 C C6 K3Q . . . O 2 -9.001 16.909 -5.815 1 99.36 ? C6 K3Q 405 B 1 
HETATM 12 O O6 K3Q . . . O 2 -8.821 15.518 -5.915 1 88.8 ? O6 K3Q 405 B 1 
HETATM 13 C C7 K3Q . . . O 2 -5.974 20.509 -9.704 1 115.63 ? C7 K3Q 405 B 1 
HETATM 14 C C8 K3Q . . . O 2 -8.891 14.965 -4.608 1 88.17 ? C8 K3Q 405 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#