data_6RGI # _model_server_result.job_id U5SiunXwGfsJ3g9Ocz354Q _model_server_result.datetime_utc '2024-11-18 14:57:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6RGI # _exptl.entry_id 6RGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6RGI _cell.length_a 74.762 _cell.length_b 74.762 _cell.length_c 60.033 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 19 A CYS 14 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.715 ? covale ? covale2 A SG CYS 22 A CYS 17 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc1 A NE2 HIS 23 A HIS 18 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 B FE HEC . A HEC 201 1_555 D N3 IMD . A IMD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 237 n n FE NB HEC sing 238 n n FE NC HEC sing 239 n n FE ND HEC sing 240 n n CHA C1A HEC doub 241 n n CHA C4D HEC sing 242 n n CHA HHA HEC sing 243 n n CHB C4A HEC doub 244 n n CHB C1B HEC sing 245 n n CHB HHB HEC sing 246 n n CHC C4B HEC doub 247 n n CHC C1C HEC sing 248 n n CHC HHC HEC sing 249 n n CHD C4C HEC doub 250 n n CHD C1D HEC sing 251 n n CHD HHD HEC sing 252 n n NA C1A HEC sing 253 n y NA C4A HEC sing 254 n y C1A C2A HEC sing 255 n y C2A C3A HEC doub 256 n y C2A CAA HEC sing 257 n n C3A C4A HEC sing 258 n y C3A CMA HEC sing 259 n n CMA HMA1 HEC sing 260 n n CMA HMA2 HEC sing 261 n n CMA HMA3 HEC sing 262 n n CAA CBA HEC sing 263 n n CAA HAA1 HEC sing 264 n n CAA HAA2 HEC sing 265 n n CBA CGA HEC sing 266 n n CBA HBA1 HEC sing 267 n n CBA HBA2 HEC sing 268 n n CGA O1A HEC doub 269 n n CGA O2A HEC sing 270 n n O2A H2A HEC sing 271 n n NB C1B HEC sing 272 n y NB C4B HEC sing 273 n y C1B C2B HEC doub 274 n y C2B C3B HEC sing 275 n y C2B CMB HEC sing 276 n n C3B C4B HEC sing 277 n y C3B CAB HEC doub 278 e n CMB HMB1 HEC sing 279 n n CMB HMB2 HEC sing 280 n n CMB HMB3 HEC sing 281 n n CAB CBB HEC sing 282 n n CAB HAB HEC sing 283 n n CBB HBB1 HEC sing 284 n n CBB HBB2 HEC sing 285 n n CBB HBB3 HEC sing 286 n n NC C1C HEC sing 287 n y NC C4C HEC sing 288 n y C1C C2C HEC doub 289 n y C2C C3C HEC sing 290 n y C2C CMC HEC sing 291 n n C3C C4C HEC sing 292 n y C3C CAC HEC doub 293 e n CMC HMC1 HEC sing 294 n n CMC HMC2 HEC sing 295 n n CMC HMC3 HEC sing 296 n n CAC CBC HEC sing 297 n n CAC HAC HEC sing 298 n n CBC HBC1 HEC sing 299 n n CBC HBC2 HEC sing 300 n n CBC HBC3 HEC sing 301 n n ND C1D HEC sing 302 n y ND C4D HEC sing 303 n y C1D C2D HEC doub 304 n y C2D C3D HEC sing 305 n y C2D CMD HEC sing 306 n n C3D C4D HEC doub 307 n y C3D CAD HEC sing 308 n n CMD HMD1 HEC sing 309 n n CMD HMD2 HEC sing 310 n n CMD HMD3 HEC sing 311 n n CAD CBD HEC sing 312 n n CAD HAD1 HEC sing 313 n n CAD HAD2 HEC sing 314 n n CBD CGD HEC sing 315 n n CBD HBD1 HEC sing 316 n n CBD HBD2 HEC sing 317 n n CGD O1D HEC doub 318 n n CGD O2D HEC sing 319 n n O2D H2D HEC sing 320 n n # _atom_sites.entry_id 6RGI _atom_sites.fract_transf_matrix[1][1] 0.013376 _atom_sites.fract_transf_matrix[1][2] 0.007723 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 201 HEC HEM . C 3 FWQ A 1 202 1 FWQ SC6 . D 4 IMD A 1 203 1 IMD IMD . E 5 HOH A 1 301 31 HOH HOH . E 5 HOH A 2 302 12 HOH HOH . E 5 HOH A 3 303 6 HOH HOH . E 5 HOH A 4 304 2 HOH HOH . E 5 HOH A 5 305 26 HOH HOH . E 5 HOH A 6 306 24 HOH HOH . E 5 HOH A 7 307 8 HOH HOH . E 5 HOH A 8 308 3 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 14 HOH HOH . E 5 HOH A 11 311 10 HOH HOH . E 5 HOH A 12 312 5 HOH HOH . E 5 HOH A 13 313 11 HOH HOH . E 5 HOH A 14 314 20 HOH HOH . E 5 HOH A 15 315 1 HOH HOH . E 5 HOH A 16 316 23 HOH HOH . E 5 HOH A 17 317 19 HOH HOH . E 5 HOH A 18 318 15 HOH HOH . E 5 HOH A 19 319 32 HOH HOH . E 5 HOH A 20 320 7 HOH HOH . E 5 HOH A 21 321 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 -31.067 -4.574 -0.973 1 75.95 ? FE HEC 201 A 1 HETATM 2 C CHA HEC . . . B 2 -29.634 -1.737 -2.077 1 82.73 ? CHA HEC 201 A 1 HETATM 3 C CHB HEC . . . B 2 -30.873 -5.865 -4.129 1 73.5 ? CHB HEC 201 A 1 HETATM 4 C CHC HEC . . . B 2 -32.762 -7.31 0.054 1 73.13 ? CHC HEC 201 A 1 HETATM 5 C CHD HEC . . . B 2 -31.891 -3.058 1.958 1 82.33 ? CHD HEC 201 A 1 HETATM 6 N NA HEC . . . B 2 -30.402 -3.952 -2.668 1 76.81 ? NA HEC 201 A 1 HETATM 7 C C1A HEC . . . B 2 -29.803 -2.75 -2.981 1 79.65 ? C1A HEC 201 A 1 HETATM 8 C C2A HEC . . . B 2 -29.312 -2.739 -4.316 1 80.43 ? C2A HEC 201 A 1 HETATM 9 C C3A HEC . . . B 2 -29.681 -3.873 -4.886 1 77.88 ? C3A HEC 201 A 1 HETATM 10 C C4A HEC . . . B 2 -30.345 -4.62 -3.905 1 75.43 ? C4A HEC 201 A 1 HETATM 11 C CMA HEC . . . B 2 -29.392 -4.317 -6.261 1 79.2 ? CMA HEC 201 A 1 HETATM 12 C CAA HEC . . . B 2 -28.568 -1.624 -4.964 1 85.19 ? CAA HEC 201 A 1 HETATM 13 C CBA HEC . . . B 2 -29.573 -0.744 -5.697 1 88.02 ? CBA HEC 201 A 1 HETATM 14 C CGA HEC . . . B 2 -28.945 0.492 -6.327 1 93.94 ? CGA HEC 201 A 1 HETATM 15 O O1A HEC . . . B 2 -29.623 1.146 -7.119 1 97.26 ? O1A HEC 201 A 1 HETATM 16 O O2A HEC . . . B 2 -27.665 0.865 -6.014 1 97.29 ? O2A HEC 201 A 1 HETATM 17 N NB HEC . . . B 2 -31.664 -6.21 -1.816 1 72.47 ? NB HEC 201 A 1 HETATM 18 C C1B HEC . . . B 2 -31.515 -6.594 -3.099 1 71.92 ? C1B HEC 201 A 1 HETATM 19 C C2B HEC . . . B 2 -32.034 -7.907 -3.354 1 70.33 ? C2B HEC 201 A 1 HETATM 20 C C3B HEC . . . B 2 -32.504 -8.349 -2.183 1 70.39 ? C3B HEC 201 A 1 HETATM 21 C C4B HEC . . . B 2 -32.306 -7.234 -1.239 1 71.67 ? C4B HEC 201 A 1 HETATM 22 C CMB HEC . . . B 2 -31.987 -8.598 -4.696 1 71.29 ? CMB HEC 201 A 1 HETATM 23 C CAB HEC . . . B 2 -33.133 -9.605 -1.856 1 70.53 ? CAB HEC 201 A 1 HETATM 24 C CBB HEC . . . B 2 -32.612 -10.732 -2.277 1 68.85 ? CBB HEC 201 A 1 HETATM 25 N NC HEC . . . B 2 -32.041 -5.089 0.648 1 76.15 ? NC HEC 201 A 1 HETATM 26 C C1C HEC . . . B 2 -32.653 -6.283 0.924 1 74.6 ? C1C HEC 201 A 1 HETATM 27 C C2C HEC . . . B 2 -33.272 -6.286 2.183 1 76.79 ? C2C HEC 201 A 1 HETATM 28 C C3C HEC . . . B 2 -33.023 -5.079 2.76 1 79.39 ? C3C HEC 201 A 1 HETATM 29 C C4C HEC . . . B 2 -32.283 -4.344 1.783 1 78.92 ? C4C HEC 201 A 1 HETATM 30 C CMC HEC . . . B 2 -34.045 -7.425 2.781 1 77.89 ? CMC HEC 201 A 1 HETATM 31 C CAC HEC . . . B 2 -33.484 -4.594 4.079 1 83.23 ? CAC HEC 201 A 1 HETATM 32 C CBC HEC . . . B 2 -33.246 -5.314 5.17 1 86.14 ? CBC HEC 201 A 1 HETATM 33 N ND HEC . . . B 2 -30.764 -2.819 -0.23 1 80.06 ? ND HEC 201 A 1 HETATM 34 C C1D HEC . . . B 2 -31.154 -2.377 0.988 1 82.37 ? C1D HEC 201 A 1 HETATM 35 C C2D HEC . . . B 2 -30.646 -1.015 1.274 1 86.43 ? C2D HEC 201 A 1 HETATM 36 C C3D HEC . . . B 2 -29.931 -0.638 0.179 1 86.73 ? C3D HEC 201 A 1 HETATM 37 C C4D HEC . . . B 2 -30.086 -1.787 -0.78 1 82.62 ? C4D HEC 201 A 1 HETATM 38 C CMD HEC . . . B 2 -30.89 -0.306 2.59 1 91.43 ? CMD HEC 201 A 1 HETATM 39 C CAD HEC . . . B 2 -29.204 0.687 -0.067 1 91.57 ? CAD HEC 201 A 1 HETATM 40 C CBD HEC . . . B 2 -27.674 0.61 -0.237 1 93.95 ? CBD HEC 201 A 1 HETATM 41 C CGD HEC . . . B 2 -26.955 -0.233 0.819 1 95.21 ? CGD HEC 201 A 1 HETATM 42 O O1D HEC . . . B 2 -27.159 -0.112 2.028 1 97.13 ? O1D HEC 201 A 1 HETATM 43 O O2D HEC . . . B 2 -26.043 -1.155 0.41 1 95.28 ? O2D HEC 201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #