data_6RGR # _model_server_result.job_id Hx_W0DzWwPhar6tXJUuYcw _model_server_result.datetime_utc '2024-11-02 06:32:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rgr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6RGR # _exptl.entry_id 6RGR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6RGR _cell.length_a 80.499 _cell.length_b 80.499 _cell.length_c 113.413 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RGR _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 37.804333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 A CYS 279 1_555 A SG CYS 279 A CYS 279 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc1 A OD1 ASN 134 A ASN 134 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc2 A O VAL 179 A VAL 179 1_555 I NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc3 A OD1 ASN 182 A ASN 182 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc4 A O GLY 185 A GLY 185 1_555 F NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc5 A O GLY 233 A GLY 233 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc6 A OE1 GLN 251 A GLN 251 1_555 G NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc7 A OD2 ASP 339 A ASP 339 1_555 H NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc8 A OG SER 357 A SER 357 1_555 H NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc9 G NA NA . A NA 406 1_555 M O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc10 I NA NA . A NA 408 1_555 M O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc11 I NA NA . A NA 408 1_555 M O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6RGR _atom_sites.fract_transf_matrix[1][1] 0.012423 _atom_sites.fract_transf_matrix[1][2] 0.007172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 401 910 EDO EDO . C 3 RM4 A 1 402 945 RM4 RM4 . D 3 RM4 A 1 403 965 RM4 RM4 . E 2 EDO A 1 404 970 EDO EDO . F 4 NA A 1 405 990 NA NA . G 4 NA A 1 406 991 NA NA . H 4 NA A 1 407 992 NA NA . I 4 NA A 1 408 993 NA NA . J 5 CL A 1 409 994 CL CL . K 5 CL A 1 410 995 CL CL . L 5 CL A 1 411 996 CL CL . M 6 HOH A 1 501 69 HOH HOH . M 6 HOH A 2 502 37 HOH HOH . M 6 HOH A 3 503 113 HOH HOH . M 6 HOH A 4 504 151 HOH HOH . M 6 HOH A 5 505 112 HOH HOH . M 6 HOH A 6 506 137 HOH HOH . M 6 HOH A 7 507 124 HOH HOH . M 6 HOH A 8 508 80 HOH HOH . M 6 HOH A 9 509 105 HOH HOH . M 6 HOH A 10 510 74 HOH HOH . M 6 HOH A 11 511 70 HOH HOH . M 6 HOH A 12 512 77 HOH HOH . M 6 HOH A 13 513 78 HOH HOH . M 6 HOH A 14 514 100 HOH HOH . M 6 HOH A 15 515 118 HOH HOH . M 6 HOH A 16 516 96 HOH HOH . M 6 HOH A 17 517 57 HOH HOH . M 6 HOH A 18 518 25 HOH HOH . M 6 HOH A 19 519 35 HOH HOH . M 6 HOH A 20 520 136 HOH HOH . M 6 HOH A 21 521 5 HOH HOH . M 6 HOH A 22 522 131 HOH HOH . M 6 HOH A 23 523 52 HOH HOH . M 6 HOH A 24 524 172 HOH HOH . M 6 HOH A 25 525 59 HOH HOH . M 6 HOH A 26 526 49 HOH HOH . M 6 HOH A 27 527 110 HOH HOH . M 6 HOH A 28 528 86 HOH HOH . M 6 HOH A 29 529 14 HOH HOH . M 6 HOH A 30 530 27 HOH HOH . M 6 HOH A 31 531 53 HOH HOH . M 6 HOH A 32 532 161 HOH HOH . M 6 HOH A 33 533 98 HOH HOH . M 6 HOH A 34 534 23 HOH HOH . M 6 HOH A 35 535 36 HOH HOH . M 6 HOH A 36 536 93 HOH HOH . M 6 HOH A 37 537 138 HOH HOH . M 6 HOH A 38 538 43 HOH HOH . M 6 HOH A 39 539 106 HOH HOH . M 6 HOH A 40 540 16 HOH HOH . M 6 HOH A 41 541 132 HOH HOH . M 6 HOH A 42 542 55 HOH HOH . M 6 HOH A 43 543 158 HOH HOH . M 6 HOH A 44 544 88 HOH HOH . M 6 HOH A 45 545 60 HOH HOH . M 6 HOH A 46 546 170 HOH HOH . M 6 HOH A 47 547 40 HOH HOH . M 6 HOH A 48 548 123 HOH HOH . M 6 HOH A 49 549 85 HOH HOH . M 6 HOH A 50 550 41 HOH HOH . M 6 HOH A 51 551 147 HOH HOH . M 6 HOH A 52 552 102 HOH HOH . M 6 HOH A 53 553 31 HOH HOH . M 6 HOH A 54 554 56 HOH HOH . M 6 HOH A 55 555 129 HOH HOH . M 6 HOH A 56 556 8 HOH HOH . M 6 HOH A 57 557 83 HOH HOH . M 6 HOH A 58 558 29 HOH HOH . M 6 HOH A 59 559 1 HOH HOH . M 6 HOH A 60 560 169 HOH HOH . M 6 HOH A 61 561 44 HOH HOH . M 6 HOH A 62 562 171 HOH HOH . M 6 HOH A 63 563 90 HOH HOH . M 6 HOH A 64 564 79 HOH HOH . M 6 HOH A 65 565 155 HOH HOH . M 6 HOH A 66 566 94 HOH HOH . M 6 HOH A 67 567 64 HOH HOH . M 6 HOH A 68 568 126 HOH HOH . M 6 HOH A 69 569 154 HOH HOH . M 6 HOH A 70 570 162 HOH HOH . M 6 HOH A 71 571 134 HOH HOH . M 6 HOH A 72 572 51 HOH HOH . M 6 HOH A 73 573 38 HOH HOH . M 6 HOH A 74 574 117 HOH HOH . M 6 HOH A 75 575 7 HOH HOH . M 6 HOH A 76 576 39 HOH HOH . M 6 HOH A 77 577 71 HOH HOH . M 6 HOH A 78 578 68 HOH HOH . M 6 HOH A 79 579 114 HOH HOH . M 6 HOH A 80 580 6 HOH HOH . M 6 HOH A 81 581 121 HOH HOH . M 6 HOH A 82 582 84 HOH HOH . M 6 HOH A 83 583 168 HOH HOH . M 6 HOH A 84 584 42 HOH HOH . M 6 HOH A 85 585 92 HOH HOH . M 6 HOH A 86 586 58 HOH HOH . M 6 HOH A 87 587 33 HOH HOH . M 6 HOH A 88 588 61 HOH HOH . M 6 HOH A 89 589 50 HOH HOH . M 6 HOH A 90 590 75 HOH HOH . M 6 HOH A 91 591 99 HOH HOH . M 6 HOH A 92 592 128 HOH HOH . M 6 HOH A 93 593 101 HOH HOH . M 6 HOH A 94 594 139 HOH HOH . M 6 HOH A 95 595 28 HOH HOH . M 6 HOH A 96 596 19 HOH HOH . M 6 HOH A 97 597 82 HOH HOH . M 6 HOH A 98 598 65 HOH HOH . M 6 HOH A 99 599 26 HOH HOH . M 6 HOH A 100 600 127 HOH HOH . M 6 HOH A 101 601 12 HOH HOH . M 6 HOH A 102 602 120 HOH HOH . M 6 HOH A 103 603 89 HOH HOH . M 6 HOH A 104 604 66 HOH HOH . M 6 HOH A 105 605 46 HOH HOH . M 6 HOH A 106 606 11 HOH HOH . M 6 HOH A 107 607 2 HOH HOH . M 6 HOH A 108 608 24 HOH HOH . M 6 HOH A 109 609 15 HOH HOH . M 6 HOH A 110 610 13 HOH HOH . M 6 HOH A 111 611 133 HOH HOH . M 6 HOH A 112 612 22 HOH HOH . M 6 HOH A 113 613 107 HOH HOH . M 6 HOH A 114 614 47 HOH HOH . M 6 HOH A 115 615 4 HOH HOH . M 6 HOH A 116 616 140 HOH HOH . M 6 HOH A 117 617 48 HOH HOH . M 6 HOH A 118 618 45 HOH HOH . M 6 HOH A 119 619 32 HOH HOH . M 6 HOH A 120 620 34 HOH HOH . M 6 HOH A 121 621 10 HOH HOH . M 6 HOH A 122 622 95 HOH HOH . M 6 HOH A 123 623 54 HOH HOH . M 6 HOH A 124 624 152 HOH HOH . M 6 HOH A 125 625 76 HOH HOH . M 6 HOH A 126 626 63 HOH HOH . M 6 HOH A 127 627 21 HOH HOH . M 6 HOH A 128 628 20 HOH HOH . M 6 HOH A 129 629 109 HOH HOH . M 6 HOH A 130 630 97 HOH HOH . M 6 HOH A 131 631 9 HOH HOH . M 6 HOH A 132 632 125 HOH HOH . M 6 HOH A 133 633 111 HOH HOH . M 6 HOH A 134 634 81 HOH HOH . M 6 HOH A 135 635 104 HOH HOH . M 6 HOH A 136 636 91 HOH HOH . M 6 HOH A 137 637 87 HOH HOH . M 6 HOH A 138 638 157 HOH HOH . M 6 HOH A 139 639 146 HOH HOH . M 6 HOH A 140 640 163 HOH HOH . M 6 HOH A 141 641 3 HOH HOH . M 6 HOH A 142 642 62 HOH HOH . M 6 HOH A 143 643 18 HOH HOH . M 6 HOH A 144 644 153 HOH HOH . M 6 HOH A 145 645 135 HOH HOH . M 6 HOH A 146 646 17 HOH HOH . M 6 HOH A 147 647 167 HOH HOH . M 6 HOH A 148 648 148 HOH HOH . M 6 HOH A 149 649 160 HOH HOH . M 6 HOH A 150 650 165 HOH HOH . M 6 HOH A 151 651 156 HOH HOH . M 6 HOH A 152 652 143 HOH HOH . M 6 HOH A 153 653 150 HOH HOH . M 6 HOH A 154 654 130 HOH HOH . M 6 HOH A 155 655 67 HOH HOH . M 6 HOH A 156 656 122 HOH HOH . M 6 HOH A 157 657 142 HOH HOH . M 6 HOH A 158 658 108 HOH HOH . M 6 HOH A 159 659 145 HOH HOH . M 6 HOH A 160 660 144 HOH HOH . M 6 HOH A 161 661 164 HOH HOH . M 6 HOH A 162 662 159 HOH HOH . M 6 HOH A 163 663 116 HOH HOH . M 6 HOH A 164 664 119 HOH HOH . M 6 HOH A 165 665 30 HOH HOH . M 6 HOH A 166 666 149 HOH HOH . M 6 HOH A 167 667 72 HOH HOH . M 6 HOH A 168 668 166 HOH HOH . M 6 HOH A 169 669 141 HOH HOH . M 6 HOH A 170 670 73 HOH HOH . M 6 HOH A 171 671 115 HOH HOH . M 6 HOH A 172 672 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 22.82 -41.955 -9.856 1 59.94 ? C1 EDO 401 A 1 HETATM 2 O O1 EDO . . . B 2 22.988 -42.457 -11.166 1 60.59 ? O1 EDO 401 A 1 HETATM 3 C C2 EDO . . . B 2 21.474 -42.226 -9.282 1 62.13 ? C2 EDO 401 A 1 HETATM 4 O O2 EDO . . . B 2 20.847 -41.084 -8.715 1 64.24 ? O2 EDO 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #