data_6RHF # _model_server_result.job_id xCULDtwlSir2fSPGhwmQsQ _model_server_result.datetime_utc '2025-01-11 08:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 6RHF # _exptl.entry_id 6RHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RHF _cell.length_a 53.934 _cell.length_b 110.044 _cell.length_c 38.945 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 6RHF _atom_sites.fract_transf_matrix[1][1] 0.018541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025677 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 201 300 FMN FMN . D 3 GOL A 1 202 3 GOL GOL . E 2 FMN B 1 201 300 FMN FMN . F 3 GOL B 1 202 1 GOL GOL . G 3 GOL B 1 203 2 GOL GOL . H 4 HOH A 1 301 225 HOH HOH . H 4 HOH A 2 302 268 HOH HOH . H 4 HOH A 3 303 169 HOH HOH . H 4 HOH A 4 304 204 HOH HOH . H 4 HOH A 5 305 100 HOH HOH . H 4 HOH A 6 306 168 HOH HOH . H 4 HOH A 7 307 118 HOH HOH . H 4 HOH A 8 308 239 HOH HOH . H 4 HOH A 9 309 228 HOH HOH . H 4 HOH A 10 310 316 HOH HOH . H 4 HOH A 11 311 192 HOH HOH . H 4 HOH A 12 312 95 HOH HOH . H 4 HOH A 13 313 251 HOH HOH . H 4 HOH A 14 314 291 HOH HOH . H 4 HOH A 15 315 213 HOH HOH . H 4 HOH A 16 316 236 HOH HOH . H 4 HOH A 17 317 233 HOH HOH . H 4 HOH A 18 318 293 HOH HOH . H 4 HOH A 19 319 151 HOH HOH . H 4 HOH A 20 320 265 HOH HOH . H 4 HOH A 21 321 117 HOH HOH . H 4 HOH A 22 322 248 HOH HOH . H 4 HOH A 23 323 207 HOH HOH . H 4 HOH A 24 324 44 HOH HOH . H 4 HOH A 25 325 124 HOH HOH . H 4 HOH A 26 326 219 HOH HOH . H 4 HOH A 27 327 92 HOH HOH . H 4 HOH A 28 328 34 HOH HOH . H 4 HOH A 29 329 56 HOH HOH . H 4 HOH A 30 330 59 HOH HOH . H 4 HOH A 31 331 28 HOH HOH . H 4 HOH A 32 332 39 HOH HOH . H 4 HOH A 33 333 90 HOH HOH . H 4 HOH A 34 334 191 HOH HOH . H 4 HOH A 35 335 61 HOH HOH . H 4 HOH A 36 336 167 HOH HOH . H 4 HOH A 37 337 43 HOH HOH . H 4 HOH A 38 338 6 HOH HOH . H 4 HOH A 39 339 46 HOH HOH . H 4 HOH A 40 340 125 HOH HOH . H 4 HOH A 41 341 5 HOH HOH . H 4 HOH A 42 342 22 HOH HOH . H 4 HOH A 43 343 35 HOH HOH . H 4 HOH A 44 344 45 HOH HOH . H 4 HOH A 45 345 197 HOH HOH . H 4 HOH A 46 346 297 HOH HOH . H 4 HOH A 47 347 20 HOH HOH . H 4 HOH A 48 348 144 HOH HOH . H 4 HOH A 49 349 15 HOH HOH . H 4 HOH A 50 350 238 HOH HOH . H 4 HOH A 51 351 273 HOH HOH . H 4 HOH A 52 352 157 HOH HOH . H 4 HOH A 53 353 99 HOH HOH . H 4 HOH A 54 354 264 HOH HOH . H 4 HOH A 55 355 177 HOH HOH . H 4 HOH A 56 356 298 HOH HOH . H 4 HOH A 57 357 64 HOH HOH . H 4 HOH A 58 358 141 HOH HOH . H 4 HOH A 59 359 21 HOH HOH . H 4 HOH A 60 360 30 HOH HOH . H 4 HOH A 61 361 1 HOH HOH . H 4 HOH A 62 362 58 HOH HOH . H 4 HOH A 63 363 315 HOH HOH . H 4 HOH A 64 364 235 HOH HOH . H 4 HOH A 65 365 16 HOH HOH . H 4 HOH A 66 366 53 HOH HOH . H 4 HOH A 67 367 62 HOH HOH . H 4 HOH A 68 368 41 HOH HOH . H 4 HOH A 69 369 93 HOH HOH . H 4 HOH A 70 370 267 HOH HOH . H 4 HOH A 71 371 111 HOH HOH . H 4 HOH A 72 372 4 HOH HOH . H 4 HOH A 73 373 166 HOH HOH . H 4 HOH A 74 374 266 HOH HOH . H 4 HOH A 75 375 115 HOH HOH . H 4 HOH A 76 376 38 HOH HOH . H 4 HOH A 77 377 108 HOH HOH . H 4 HOH A 78 378 112 HOH HOH . H 4 HOH A 79 379 145 HOH HOH . H 4 HOH A 80 380 263 HOH HOH . H 4 HOH A 81 381 85 HOH HOH . H 4 HOH A 82 382 203 HOH HOH . H 4 HOH A 83 383 261 HOH HOH . H 4 HOH A 84 384 119 HOH HOH . H 4 HOH A 85 385 19 HOH HOH . H 4 HOH A 86 386 29 HOH HOH . H 4 HOH A 87 387 275 HOH HOH . H 4 HOH A 88 388 126 HOH HOH . H 4 HOH A 89 389 281 HOH HOH . H 4 HOH A 90 390 269 HOH HOH . H 4 HOH A 91 391 83 HOH HOH . H 4 HOH A 92 392 132 HOH HOH . H 4 HOH A 93 393 79 HOH HOH . H 4 HOH A 94 394 55 HOH HOH . H 4 HOH A 95 395 237 HOH HOH . H 4 HOH A 96 396 96 HOH HOH . H 4 HOH A 97 397 194 HOH HOH . H 4 HOH A 98 398 14 HOH HOH . H 4 HOH A 99 399 109 HOH HOH . H 4 HOH A 100 400 57 HOH HOH . H 4 HOH A 101 401 217 HOH HOH . H 4 HOH A 102 402 274 HOH HOH . H 4 HOH A 103 403 183 HOH HOH . H 4 HOH A 104 404 54 HOH HOH . H 4 HOH A 105 405 94 HOH HOH . H 4 HOH A 106 406 63 HOH HOH . H 4 HOH A 107 407 212 HOH HOH . H 4 HOH A 108 408 40 HOH HOH . H 4 HOH A 109 409 258 HOH HOH . H 4 HOH A 110 410 247 HOH HOH . H 4 HOH A 111 411 110 HOH HOH . H 4 HOH A 112 412 2 HOH HOH . H 4 HOH A 113 413 308 HOH HOH . H 4 HOH A 114 414 245 HOH HOH . H 4 HOH A 115 415 306 HOH HOH . H 4 HOH A 116 416 193 HOH HOH . H 4 HOH A 117 417 232 HOH HOH . H 4 HOH A 118 418 276 HOH HOH . H 4 HOH A 119 419 222 HOH HOH . H 4 HOH A 120 420 305 HOH HOH . H 4 HOH A 121 421 189 HOH HOH . H 4 HOH A 122 422 292 HOH HOH . H 4 HOH A 123 423 294 HOH HOH . H 4 HOH A 124 424 246 HOH HOH . H 4 HOH A 125 425 309 HOH HOH . H 4 HOH A 126 426 89 HOH HOH . H 4 HOH A 127 427 300 HOH HOH . H 4 HOH A 128 428 158 HOH HOH . H 4 HOH A 129 429 249 HOH HOH . H 4 HOH A 130 430 187 HOH HOH . H 4 HOH A 131 431 304 HOH HOH . H 4 HOH A 132 432 301 HOH HOH . H 4 HOH A 133 433 262 HOH HOH . H 4 HOH A 134 434 317 HOH HOH . H 4 HOH A 135 435 257 HOH HOH . H 4 HOH A 136 436 215 HOH HOH . H 4 HOH A 137 437 295 HOH HOH . H 4 HOH A 138 438 84 HOH HOH . H 4 HOH A 139 439 299 HOH HOH . H 4 HOH A 140 440 259 HOH HOH . H 4 HOH A 141 441 234 HOH HOH . H 4 HOH A 142 442 282 HOH HOH . H 4 HOH A 143 443 223 HOH HOH . H 4 HOH A 144 444 307 HOH HOH . H 4 HOH A 145 445 146 HOH HOH . H 4 HOH A 146 446 289 HOH HOH . H 4 HOH A 147 447 42 HOH HOH . H 4 HOH A 148 448 303 HOH HOH . H 4 HOH A 149 449 188 HOH HOH . H 4 HOH A 150 450 218 HOH HOH . H 4 HOH A 151 451 302 HOH HOH . H 4 HOH A 152 452 69 HOH HOH . H 4 HOH A 153 453 311 HOH HOH . H 4 HOH A 154 454 250 HOH HOH . H 4 HOH A 155 455 312 HOH HOH . H 4 HOH A 156 456 310 HOH HOH . H 4 HOH A 157 457 313 HOH HOH . H 4 HOH A 158 458 314 HOH HOH . I 4 HOH B 1 301 224 HOH HOH . I 4 HOH B 2 302 284 HOH HOH . I 4 HOH B 3 303 162 HOH HOH . I 4 HOH B 4 304 140 HOH HOH . I 4 HOH B 5 305 290 HOH HOH . I 4 HOH B 6 306 205 HOH HOH . I 4 HOH B 7 307 98 HOH HOH . I 4 HOH B 8 308 184 HOH HOH . I 4 HOH B 9 309 47 HOH HOH . I 4 HOH B 10 310 152 HOH HOH . I 4 HOH B 11 311 171 HOH HOH . I 4 HOH B 12 312 36 HOH HOH . I 4 HOH B 13 313 87 HOH HOH . I 4 HOH B 14 314 73 HOH HOH . I 4 HOH B 15 315 211 HOH HOH . I 4 HOH B 16 316 72 HOH HOH . I 4 HOH B 17 317 101 HOH HOH . I 4 HOH B 18 318 221 HOH HOH . I 4 HOH B 19 319 31 HOH HOH . I 4 HOH B 20 320 283 HOH HOH . I 4 HOH B 21 321 12 HOH HOH . I 4 HOH B 22 322 127 HOH HOH . I 4 HOH B 23 323 161 HOH HOH . I 4 HOH B 24 324 130 HOH HOH . I 4 HOH B 25 325 65 HOH HOH . I 4 HOH B 26 326 165 HOH HOH . I 4 HOH B 27 327 23 HOH HOH . I 4 HOH B 28 328 181 HOH HOH . I 4 HOH B 29 329 107 HOH HOH . I 4 HOH B 30 330 182 HOH HOH . I 4 HOH B 31 331 173 HOH HOH . I 4 HOH B 32 332 319 HOH HOH . I 4 HOH B 33 333 153 HOH HOH . I 4 HOH B 34 334 13 HOH HOH . I 4 HOH B 35 335 154 HOH HOH . I 4 HOH B 36 336 9 HOH HOH . I 4 HOH B 37 337 7 HOH HOH . I 4 HOH B 38 338 17 HOH HOH . I 4 HOH B 39 339 318 HOH HOH . I 4 HOH B 40 340 148 HOH HOH . I 4 HOH B 41 341 68 HOH HOH . I 4 HOH B 42 342 216 HOH HOH . I 4 HOH B 43 343 214 HOH HOH . I 4 HOH B 44 344 78 HOH HOH . I 4 HOH B 45 345 11 HOH HOH . I 4 HOH B 46 346 231 HOH HOH . I 4 HOH B 47 347 52 HOH HOH . I 4 HOH B 48 348 33 HOH HOH . I 4 HOH B 49 349 116 HOH HOH . I 4 HOH B 50 350 139 HOH HOH . I 4 HOH B 51 351 26 HOH HOH . I 4 HOH B 52 352 174 HOH HOH . I 4 HOH B 53 353 71 HOH HOH . I 4 HOH B 54 354 8 HOH HOH . I 4 HOH B 55 355 51 HOH HOH . I 4 HOH B 56 356 240 HOH HOH . I 4 HOH B 57 357 185 HOH HOH . I 4 HOH B 58 358 49 HOH HOH . I 4 HOH B 59 359 82 HOH HOH . I 4 HOH B 60 360 202 HOH HOH . I 4 HOH B 61 361 102 HOH HOH . I 4 HOH B 62 362 106 HOH HOH . I 4 HOH B 63 363 75 HOH HOH . I 4 HOH B 64 364 114 HOH HOH . I 4 HOH B 65 365 277 HOH HOH . I 4 HOH B 66 366 170 HOH HOH . I 4 HOH B 67 367 321 HOH HOH . I 4 HOH B 68 368 123 HOH HOH . I 4 HOH B 69 369 18 HOH HOH . I 4 HOH B 70 370 137 HOH HOH . I 4 HOH B 71 371 296 HOH HOH . I 4 HOH B 72 372 32 HOH HOH . I 4 HOH B 73 373 86 HOH HOH . I 4 HOH B 74 374 80 HOH HOH . I 4 HOH B 75 375 155 HOH HOH . I 4 HOH B 76 376 179 HOH HOH . I 4 HOH B 77 377 210 HOH HOH . I 4 HOH B 78 378 97 HOH HOH . I 4 HOH B 79 379 138 HOH HOH . I 4 HOH B 80 380 91 HOH HOH . I 4 HOH B 81 381 288 HOH HOH . I 4 HOH B 82 382 105 HOH HOH . I 4 HOH B 83 383 76 HOH HOH . I 4 HOH B 84 384 172 HOH HOH . I 4 HOH B 85 385 10 HOH HOH . I 4 HOH B 86 386 70 HOH HOH . I 4 HOH B 87 387 254 HOH HOH . I 4 HOH B 88 388 156 HOH HOH . I 4 HOH B 89 389 3 HOH HOH . I 4 HOH B 90 390 24 HOH HOH . I 4 HOH B 91 391 271 HOH HOH . I 4 HOH B 92 392 176 HOH HOH . I 4 HOH B 93 393 67 HOH HOH . I 4 HOH B 94 394 103 HOH HOH . I 4 HOH B 95 395 230 HOH HOH . I 4 HOH B 96 396 60 HOH HOH . I 4 HOH B 97 397 104 HOH HOH . I 4 HOH B 98 398 195 HOH HOH . I 4 HOH B 99 399 77 HOH HOH . I 4 HOH B 100 400 324 HOH HOH . I 4 HOH B 101 401 48 HOH HOH . I 4 HOH B 102 402 270 HOH HOH . I 4 HOH B 103 403 134 HOH HOH . I 4 HOH B 104 404 50 HOH HOH . I 4 HOH B 105 405 253 HOH HOH . I 4 HOH B 106 406 160 HOH HOH . I 4 HOH B 107 407 164 HOH HOH . I 4 HOH B 108 408 243 HOH HOH . I 4 HOH B 109 409 285 HOH HOH . I 4 HOH B 110 410 272 HOH HOH . I 4 HOH B 111 411 252 HOH HOH . I 4 HOH B 112 412 280 HOH HOH . I 4 HOH B 113 413 260 HOH HOH . I 4 HOH B 114 414 286 HOH HOH . I 4 HOH B 115 415 241 HOH HOH . I 4 HOH B 116 416 226 HOH HOH . I 4 HOH B 117 417 278 HOH HOH . I 4 HOH B 118 418 163 HOH HOH . I 4 HOH B 119 419 255 HOH HOH . I 4 HOH B 120 420 81 HOH HOH . I 4 HOH B 121 421 326 HOH HOH . I 4 HOH B 122 422 279 HOH HOH . I 4 HOH B 123 423 287 HOH HOH . I 4 HOH B 124 424 196 HOH HOH . I 4 HOH B 125 425 244 HOH HOH . I 4 HOH B 126 426 323 HOH HOH . I 4 HOH B 127 427 149 HOH HOH . I 4 HOH B 128 428 74 HOH HOH . I 4 HOH B 129 429 121 HOH HOH . I 4 HOH B 130 430 320 HOH HOH . I 4 HOH B 131 431 322 HOH HOH . I 4 HOH B 132 432 227 HOH HOH . I 4 HOH B 133 433 201 HOH HOH . I 4 HOH B 134 434 25 HOH HOH . I 4 HOH B 135 435 120 HOH HOH . I 4 HOH B 136 436 229 HOH HOH . I 4 HOH B 137 437 325 HOH HOH . I 4 HOH B 138 438 142 HOH HOH . I 4 HOH B 139 439 27 HOH HOH . I 4 HOH B 140 440 159 HOH HOH . I 4 HOH B 141 441 136 HOH HOH . I 4 HOH B 142 442 143 HOH HOH . I 4 HOH B 143 443 242 HOH HOH . I 4 HOH B 144 444 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 -35.63 -4.266 10.605 0.65 18.16 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . G 3 -35.009 -4.683 11.802 0.65 18.38 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . G 3 -35.312 -2.843 10.292 0.65 16.76 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . G 3 -33.931 -2.601 10.231 0.65 17.19 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . G 3 -35.828 -2.474 8.919 0.65 18.12 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . G 3 -35.761 -1.101 8.689 0.65 14.57 ? O3 GOL 203 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #