data_6RHL # _model_server_result.job_id bEMfSsgVxo5aj3cJGQhP_g _model_server_result.datetime_utc '2024-11-22 05:36:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rhl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6RHL # _exptl.entry_id 6RHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 560.573 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-[(2~{R})-3-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-oxidanyl-propyl]sulfanyl-6-(hydroxymethyl)oxane-3,5-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RHL _cell.length_a 37.182 _cell.length_b 58.403 _cell.length_c 63.936 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H26 F2 N6 O5 S' _chem_comp.formula_weight 560.573 _chem_comp.id J0T _chem_comp.mon_nstd_flag . _chem_comp.name (2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-[(2~{R})-3-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-2-oxidanyl-propyl]sulfanyl-6-(hydroxymethyl)oxane-3,5-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N10 N09 J0T doub 173 n y N10 N11 J0T sing 174 n y N09 C08 J0T sing 175 n y O22 C16 J0T sing 176 n n C15 N11 J0T sing 177 n n C15 C16 J0T sing 178 n n C15 C14 J0T sing 179 n n N11 C12 J0T sing 180 n y C17 C16 J0T sing 181 n n C17 S23 J0T sing 182 n n C17 O18 J0T sing 183 n n C24 S23 J0T sing 184 n n C24 C25 J0T sing 185 n n C13 C14 J0T sing 186 n n C13 O18 J0T sing 187 n n C13 C20 J0T sing 188 n n C14 O19 J0T sing 189 n n C08 C12 J0T doub 190 n y C08 C02 J0T sing 191 n n C03 C02 J0T doub 192 n y C03 C04 J0T sing 193 n y O21 C20 J0T sing 194 n n C27 C25 J0T sing 195 n n C27 N28 J0T sing 196 n n C02 C01 J0T sing 197 n y C25 O26 J0T sing 198 n n C04 C05 J0T doub 199 n y N29 N28 J0T sing 200 n y N29 N32 J0T doub 201 n y N28 C31 J0T sing 202 n y N32 C30 J0T sing 203 n y C01 C06 J0T doub 204 n y C31 C30 J0T doub 205 n y C05 C06 J0T sing 206 n y C30 C33 J0T sing 207 n n C06 F07 J0T sing 208 n n C33 C34 J0T doub 209 n y C33 C38 J0T sing 210 n y C34 C35 J0T sing 211 n y C38 C37 J0T doub 212 n y C35 F39 J0T sing 213 n n C35 C36 J0T doub 214 n y C37 C36 J0T sing 215 n y C03 H1 J0T sing 216 n n C05 H2 J0T sing 217 n n C12 H3 J0T sing 218 n n C14 H4 J0T sing 219 n n C15 H5 J0T sing 220 n n C16 H6 J0T sing 221 n n C24 H7 J0T sing 222 n n C24 H8 J0T sing 223 n n C37 H9 J0T sing 224 n n C01 H10 J0T sing 225 n n C04 H11 J0T sing 226 n n C13 H12 J0T sing 227 n n C17 H13 J0T sing 228 n n C20 H14 J0T sing 229 n n C20 H15 J0T sing 230 n n C25 H16 J0T sing 231 n n C27 H17 J0T sing 232 n n C27 H18 J0T sing 233 n n C31 H19 J0T sing 234 n n C34 H20 J0T sing 235 n n C36 H21 J0T sing 236 n n C38 H22 J0T sing 237 n n O19 H23 J0T sing 238 n n O21 H24 J0T sing 239 n n O22 H25 J0T sing 240 n n O26 H26 J0T sing 241 n n # _atom_sites.entry_id 6RHL _atom_sites.fract_transf_matrix[1][1] 0.026895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J0T A 1 301 301 J0T R . C 3 HOH A 1 401 46 HOH HOH . C 3 HOH A 2 402 31 HOH HOH . C 3 HOH A 3 403 4 HOH HOH . C 3 HOH A 4 404 81 HOH HOH . C 3 HOH A 5 405 90 HOH HOH . C 3 HOH A 6 406 36 HOH HOH . C 3 HOH A 7 407 29 HOH HOH . C 3 HOH A 8 408 78 HOH HOH . C 3 HOH A 9 409 75 HOH HOH . C 3 HOH A 10 410 60 HOH HOH . C 3 HOH A 11 411 37 HOH HOH . C 3 HOH A 12 412 64 HOH HOH . C 3 HOH A 13 413 35 HOH HOH . C 3 HOH A 14 414 42 HOH HOH . C 3 HOH A 15 415 66 HOH HOH . C 3 HOH A 16 416 69 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 5 HOH HOH . C 3 HOH A 19 419 10 HOH HOH . C 3 HOH A 20 420 13 HOH HOH . C 3 HOH A 21 421 25 HOH HOH . C 3 HOH A 22 422 49 HOH HOH . C 3 HOH A 23 423 68 HOH HOH . C 3 HOH A 24 424 3 HOH HOH . C 3 HOH A 25 425 41 HOH HOH . C 3 HOH A 26 426 80 HOH HOH . C 3 HOH A 27 427 1 HOH HOH . C 3 HOH A 28 428 16 HOH HOH . C 3 HOH A 29 429 73 HOH HOH . C 3 HOH A 30 430 57 HOH HOH . C 3 HOH A 31 431 97 HOH HOH . C 3 HOH A 32 432 11 HOH HOH . C 3 HOH A 33 433 56 HOH HOH . C 3 HOH A 34 434 2 HOH HOH . C 3 HOH A 35 435 9 HOH HOH . C 3 HOH A 36 436 96 HOH HOH . C 3 HOH A 37 437 7 HOH HOH . C 3 HOH A 38 438 74 HOH HOH . C 3 HOH A 39 439 65 HOH HOH . C 3 HOH A 40 440 23 HOH HOH . C 3 HOH A 41 441 12 HOH HOH . C 3 HOH A 42 442 15 HOH HOH . C 3 HOH A 43 443 61 HOH HOH . C 3 HOH A 44 444 70 HOH HOH . C 3 HOH A 45 445 52 HOH HOH . C 3 HOH A 46 446 62 HOH HOH . C 3 HOH A 47 447 85 HOH HOH . C 3 HOH A 48 448 22 HOH HOH . C 3 HOH A 49 449 77 HOH HOH . C 3 HOH A 50 450 6 HOH HOH . C 3 HOH A 51 451 53 HOH HOH . C 3 HOH A 52 452 27 HOH HOH . C 3 HOH A 53 453 47 HOH HOH . C 3 HOH A 54 454 20 HOH HOH . C 3 HOH A 55 455 87 HOH HOH . C 3 HOH A 56 456 63 HOH HOH . C 3 HOH A 57 457 32 HOH HOH . C 3 HOH A 58 458 98 HOH HOH . C 3 HOH A 59 459 43 HOH HOH . C 3 HOH A 60 460 39 HOH HOH . C 3 HOH A 61 461 58 HOH HOH . C 3 HOH A 62 462 26 HOH HOH . C 3 HOH A 63 463 51 HOH HOH . C 3 HOH A 64 464 33 HOH HOH . C 3 HOH A 65 465 45 HOH HOH . C 3 HOH A 66 466 54 HOH HOH . C 3 HOH A 67 467 83 HOH HOH . C 3 HOH A 68 468 44 HOH HOH . C 3 HOH A 69 469 28 HOH HOH . C 3 HOH A 70 470 95 HOH HOH . C 3 HOH A 71 471 18 HOH HOH . C 3 HOH A 72 472 71 HOH HOH . C 3 HOH A 73 473 48 HOH HOH . C 3 HOH A 74 474 82 HOH HOH . C 3 HOH A 75 475 92 HOH HOH . C 3 HOH A 76 476 84 HOH HOH . C 3 HOH A 77 477 30 HOH HOH . C 3 HOH A 78 478 50 HOH HOH . C 3 HOH A 79 479 40 HOH HOH . C 3 HOH A 80 480 24 HOH HOH . C 3 HOH A 81 481 8 HOH HOH . C 3 HOH A 82 482 21 HOH HOH . C 3 HOH A 83 483 14 HOH HOH . C 3 HOH A 84 484 91 HOH HOH . C 3 HOH A 85 485 99 HOH HOH . C 3 HOH A 86 486 100 HOH HOH . C 3 HOH A 87 487 89 HOH HOH . C 3 HOH A 88 488 88 HOH HOH . C 3 HOH A 89 489 55 HOH HOH . C 3 HOH A 90 490 79 HOH HOH . C 3 HOH A 91 491 93 HOH HOH . C 3 HOH A 92 492 59 HOH HOH . C 3 HOH A 93 493 19 HOH HOH . C 3 HOH A 94 494 67 HOH HOH . C 3 HOH A 95 495 76 HOH HOH . C 3 HOH A 96 496 72 HOH HOH . C 3 HOH A 97 497 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 J0T . . . B 2 -13.185 8.655 0.266 1 39.38 ? C02 J0T 301 A 1 HETATM 2 C C03 J0T . . . B 2 -11.931 8.936 -0.326 1 41.28 ? C03 J0T 301 A 1 HETATM 3 C C05 J0T . . . B 2 -10.812 9.027 1.837 1 41.09 ? C05 J0T 301 A 1 HETATM 4 C C06 J0T . . . B 2 -12.049 8.758 2.391 1 38.91 ? C06 J0T 301 A 1 HETATM 5 C C08 J0T . . . B 2 -14.432 8.431 -0.485 1 37.72 ? C08 J0T 301 A 1 HETATM 6 C C12 J0T . . . B 2 -15.79 8.435 -0.076 1 34.2 ? C12 J0T 301 A 1 HETATM 7 C C14 J0T . . . B 2 -18.518 6.782 -0.483 1 23.34 ? C14 J0T 301 A 1 HETATM 8 C C15 J0T . . . B 2 -17.996 7.986 -1.357 1 26.23 ? C15 J0T 301 A 1 HETATM 9 C C16 J0T . . . B 2 -18.85 9.217 -0.992 1 28.16 ? C16 J0T 301 A 1 HETATM 10 C C24 J0T . . . B 2 -22.939 9.84 -0.814 1 32.32 ? C24 J0T 301 A 1 HETATM 11 C C33 J0T . . . B 2 -28.836 9.712 3.768 1 58.16 ? C33 J0T 301 A 1 HETATM 12 C C35 J0T . . . B 2 -30.859 10.235 5.013 1 62.17 ? C35 J0T 301 A 1 HETATM 13 C C37 J0T . . . B 2 -29.833 8.115 5.337 1 59.99 ? C37 J0T 301 A 1 HETATM 14 C C01 J0T . . . B 2 -13.209 8.556 1.659 1 36.6 ? C01 J0T 301 A 1 HETATM 15 C C04 J0T . . . B 2 -10.762 9.118 0.45 1 42.1 ? C04 J0T 301 A 1 HETATM 16 C C13 J0T . . . B 2 -20.043 6.553 -0.727 1 22.66 ? C13 J0T 301 A 1 HETATM 17 C C17 J0T . . . B 2 -20.368 8.847 -1.153 1 27.28 ? C17 J0T 301 A 1 HETATM 18 C C20 J0T . . . B 2 -20.588 5.471 0.199 1 24.37 ? C20 J0T 301 A 1 HETATM 19 C C25 J0T . . . B 2 -23.709 10.134 0.414 1 31.65 ? C25 J0T 301 A 1 HETATM 20 C C27 J0T . . . B 2 -25.21 9.906 0.154 1 37.42 ? C27 J0T 301 A 1 HETATM 21 C C30 J0T . . . B 2 -27.764 10.044 2.81 1 54.76 ? C30 J0T 301 A 1 HETATM 22 C C31 J0T . . . B 2 -27.092 9.296 1.81 1 51.1 ? C31 J0T 301 A 1 HETATM 23 C C34 J0T . . . B 2 -29.867 10.608 4.081 1 60.41 ? C34 J0T 301 A 1 HETATM 24 C C36 J0T . . . B 2 -30.869 8.99 5.659 1 61.76 ? C36 J0T 301 A 1 HETATM 25 C C38 J0T . . . B 2 -28.85 8.47 4.414 1 59.14 ? C38 J0T 301 A 1 HETATM 26 F F07 J0T . . . B 2 -12.116 8.651 3.709 1 40.01 ? F07 J0T 301 A 1 HETATM 27 F F39 J0T . . . B 2 -31.842 11.086 5.302 1 63.65 ? F39 J0T 301 A 1 HETATM 28 N N09 J0T . . . B 2 -14.45 8.102 -1.86 1 38.02 ? N09 J0T 301 A 1 HETATM 29 N N10 J0T . . . B 2 -15.67 7.94 -2.267 1 35.56 ? N10 J0T 301 A 1 HETATM 30 N N11 J0T . . . B 2 -16.566 8.136 -1.219 1 29.17 ? N11 J0T 301 A 1 HETATM 31 N N28 J0T . . . B 2 -26.125 10.194 1.235 1 46.47 ? N28 J0T 301 A 1 HETATM 32 N N29 J0T . . . B 2 -26.241 11.405 1.884 1 51.75 ? N29 J0T 301 A 1 HETATM 33 N N32 J0T . . . B 2 -27.166 11.341 2.785 1 53.98 ? N32 J0T 301 A 1 HETATM 34 O O18 J0T . . . B 2 -20.726 7.696 -0.332 1 23.21 ? O18 J0T 301 A 1 HETATM 35 O O19 J0T . . . B 2 -18.22 7.026 0.896 1 21.56 ? O19 J0T 301 A 1 HETATM 36 O O21 J0T . . . B 2 -21.932 5.235 -0.081 1 26.11 ? O21 J0T 301 A 1 HETATM 37 O O22 J0T . . . B 2 -18.538 10.258 -1.925 1 31.71 ? O22 J0T 301 A 1 HETATM 38 O O26 J0T . . . B 2 -23.293 9.268 1.458 1 27.34 ? O26 J0T 301 A 1 HETATM 39 S S23 J0T . . . B 2 -21.254 10.224 -0.575 1 34.47 ? S23 J0T 301 A 1 HETATM 40 H H1 J0T . . . B 2 -11.841 9.009 -1.249 1 49.54 ? H1 J0T 301 A 1 HETATM 41 H H2 J0T . . . B 2 -10.058 9.14 2.37 1 49.31 ? H2 J0T 301 A 1 HETATM 42 H H3 J0T . . . B 2 -16.157 8.595 0.764 1 41.04 ? H3 J0T 301 A 1 HETATM 43 H H4 J0T . . . B 2 -18.079 5.959 -0.751 1 28.01 ? H4 J0T 301 A 1 HETATM 44 H H5 J0T . . . B 2 -18.159 7.815 -2.298 1 31.48 ? H5 J0T 301 A 1 HETATM 45 H H6 J0T . . . B 2 -18.644 9.499 -0.087 1 33.8 ? H6 J0T 301 A 1 HETATM 46 H H7 J0T . . . B 2 -22.972 8.903 -1.061 1 38.79 ? H7 J0T 301 A 1 HETATM 47 H H8 J0T . . . B 2 -23.233 10.366 -1.575 1 38.79 ? H8 J0T 301 A 1 HETATM 48 H H9 J0T . . . B 2 -29.82 7.286 5.758 1 71.99 ? H9 J0T 301 A 1 HETATM 49 H H10 J0T . . . B 2 -13.986 8.357 2.129 1 43.92 ? H10 J0T 301 A 1 HETATM 50 H H11 J0T . . . B 2 -9.94 9.301 0.056 1 50.53 ? H11 J0T 301 A 1 HETATM 51 H H12 J0T . . . B 2 -20.179 6.272 -1.646 1 27.19 ? H12 J0T 301 A 1 HETATM 52 H H13 J0T . . . B 2 -20.623 8.746 -2.083 1 32.74 ? H13 J0T 301 A 1 HETATM 53 H H14 J0T . . . B 2 -20.074 4.656 0.097 1 29.25 ? H14 J0T 301 A 1 HETATM 54 H H15 J0T . . . B 2 -20.478 5.74 1.125 1 29.25 ? H15 J0T 301 A 1 HETATM 55 H H16 J0T . . . B 2 -23.573 11.058 0.677 1 37.98 ? H16 J0T 301 A 1 HETATM 56 H H17 J0T . . . B 2 -25.48 10.425 -0.619 1 44.91 ? H17 J0T 301 A 1 HETATM 57 H H18 J0T . . . B 2 -25.348 8.987 -0.123 1 44.91 ? H18 J0T 301 A 1 HETATM 58 H H19 J0T . . . B 2 -27.206 8.414 1.538 1 61.33 ? H19 J0T 301 A 1 HETATM 59 H H20 J0T . . . B 2 -29.926 11.453 3.696 1 72.49 ? H20 J0T 301 A 1 HETATM 60 H H21 J0T . . . B 2 -31.532 8.761 6.27 1 74.12 ? H21 J0T 301 A 1 HETATM 61 H H22 J0T . . . B 2 -28.189 7.84 4.238 1 70.97 ? H22 J0T 301 A 1 HETATM 62 H H23 J0T . . . B 2 -18.151 7.868 0.989 1 25.88 ? H23 J0T 301 A 1 HETATM 63 H H24 J0T . . . B 2 -21.984 5.09 -0.917 1 31.34 ? H24 J0T 301 A 1 HETATM 64 H H25 J0T . . . B 2 -19.253 10.686 -2.094 1 38.05 ? H25 J0T 301 A 1 HETATM 65 H H26 J0T . . . B 2 -23.705 9.49 2.168 1 32.81 ? H26 J0T 301 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 65 #