data_6RHS # _model_server_result.job_id AogD9l5_V3_T00lvNMRbiQ _model_server_result.datetime_utc '2024-10-16 23:39:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rhs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6RHS # _exptl.entry_id 6RHS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RHS _cell.length_a 135.5 _cell.length_b 135.5 _cell.length_c 125.69 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RHS _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 271 0 3 'crystal symmetry operation' 3_665 -y+1,x+1,z 0 -1 0 1 0 0 0 0 1 135.5 135.5 0 4 'crystal symmetry operation' 4_465 y-1,-x+1,z 0 1 0 -1 0 0 0 0 1 -135.5 135.5 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 6RHS _atom_sites.fract_transf_matrix[1][1] 0.00738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 501 501 FMN FMN . C 3 GOL A 1 502 1101 GOL GOL . D 3 GOL A 1 503 1301 GOL GOL . E 4 HOH A 1 601 620 HOH HOH . E 4 HOH A 2 602 610 HOH HOH . E 4 HOH A 3 603 618 HOH HOH . E 4 HOH A 4 604 601 HOH HOH . E 4 HOH A 5 605 605 HOH HOH . E 4 HOH A 6 606 617 HOH HOH . E 4 HOH A 7 607 603 HOH HOH . E 4 HOH A 8 608 622 HOH HOH . E 4 HOH A 9 609 613 HOH HOH . E 4 HOH A 10 610 623 HOH HOH . E 4 HOH A 11 611 604 HOH HOH . E 4 HOH A 12 612 616 HOH HOH . E 4 HOH A 13 613 606 HOH HOH . E 4 HOH A 14 614 611 HOH HOH . E 4 HOH A 15 615 602 HOH HOH . E 4 HOH A 16 616 608 HOH HOH . E 4 HOH A 17 617 607 HOH HOH . E 4 HOH A 18 618 615 HOH HOH . E 4 HOH A 19 619 609 HOH HOH . E 4 HOH A 20 620 619 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 8.813 105.597 39.776 1 29.21 ? N1 FMN 501 A 1 HETATM 2 C C2 FMN . . . B 2 8.892 104.329 40.222 1 31.96 ? C2 FMN 501 A 1 HETATM 3 O O2 FMN . . . B 2 8.923 104.084 41.432 1 31.09 ? O2 FMN 501 A 1 HETATM 4 N N3 FMN . . . B 2 8.952 103.271 39.41 1 35.66 ? N3 FMN 501 A 1 HETATM 5 C C4 FMN . . . B 2 8.911 103.374 38.089 1 34 ? C4 FMN 501 A 1 HETATM 6 O O4 FMN . . . B 2 8.948 102.373 37.369 1 34.42 ? O4 FMN 501 A 1 HETATM 7 C C4A FMN . . . B 2 8.823 104.704 37.5 1 32.13 ? C4A FMN 501 A 1 HETATM 8 N N5 FMN . . . B 2 8.79 104.861 36.162 1 31.02 ? N5 FMN 501 A 1 HETATM 9 C C5A FMN . . . B 2 8.728 106.095 35.629 1 33 ? C5A FMN 501 A 1 HETATM 10 C C6 FMN . . . B 2 8.703 106.257 34.237 1 33.26 ? C6 FMN 501 A 1 HETATM 11 C C7 FMN . . . B 2 8.668 107.541 33.696 1 33.59 ? C7 FMN 501 A 1 HETATM 12 C C7M FMN . . . B 2 8.633 107.794 32.218 1 33.54 ? C7M FMN 501 A 1 HETATM 13 C C8 FMN . . . B 2 8.69 108.709 34.607 1 33.67 ? C8 FMN 501 A 1 HETATM 14 C C8M FMN . . . B 2 8.606 110.102 34.025 1 35.09 ? C8M FMN 501 A 1 HETATM 15 C C9 FMN . . . B 2 8.703 108.541 35.976 1 31.09 ? C9 FMN 501 A 1 HETATM 16 C C9A FMN . . . B 2 8.704 107.287 36.537 1 31.64 ? C9A FMN 501 A 1 HETATM 17 N N10 FMN . . . B 2 8.695 107.109 37.946 1 31.6 ? N10 FMN 501 A 1 HETATM 18 C C10 FMN . . . B 2 8.755 105.823 38.458 1 30.11 ? C10 FMN 501 A 1 HETATM 19 C C1' FMN . . . B 2 8.728 108.236 38.899 1 31.99 ? C1' FMN 501 A 1 HETATM 20 C C2' FMN . . . B 2 10.192 108.611 39.09 1 29.92 ? C2' FMN 501 A 1 HETATM 21 O O2' FMN . . . B 2 10.822 107.616 39.928 1 30.94 ? O2' FMN 501 A 1 HETATM 22 C C3' FMN . . . B 2 10.393 109.969 39.74 1 28.97 ? C3' FMN 501 A 1 HETATM 23 O O3' FMN . . . B 2 9.642 110.028 40.978 1 26.92 ? O3' FMN 501 A 1 HETATM 24 C C4' FMN . . . B 2 10.072 111.146 38.829 1 29.3 ? C4' FMN 501 A 1 HETATM 25 O O4' FMN . . . B 2 10.317 110.899 37.425 1 25.78 ? O4' FMN 501 A 1 HETATM 26 C C5' FMN . . . B 2 10.791 112.401 39.362 1 29.36 ? C5' FMN 501 A 1 HETATM 27 O O5' FMN . . . B 2 10.234 113.579 38.754 1 28.72 ? O5' FMN 501 A 1 HETATM 28 P P FMN . . . B 2 10.992 114.274 37.47 1 29.59 ? P FMN 501 A 1 HETATM 29 O O1P FMN . . . B 2 10.759 113.373 36.289 1 28.04 ? O1P FMN 501 A 1 HETATM 30 O O2P FMN . . . B 2 12.41 114.454 37.966 1 32.9 ? O2P FMN 501 A 1 HETATM 31 O O3P FMN . . . B 2 10.444 115.66 37.349 1 31.74 ? O3P FMN 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #