data_6RIJ # _model_server_result.job_id hejMRg_nzWBHflI-qIOX8Q _model_server_result.datetime_utc '2025-01-10 14:50:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":303}' # _entry.id 6RIJ # _exptl.entry_id 6RIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.51 _cell.angle_gamma 90 _cell.entry_id 6RIJ _cell.length_a 72.31 _cell.length_b 148.06 _cell.length_c 162.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,O,P 1 1 C,D,J,K,L,M,N,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 L N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 160 A TYR 159 1_555 A N TPO 161 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C TPO 161 A TPO 160 1_555 A N HIS 162 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 C C TYR 160 C TYR 159 1_555 C N TPO 161 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 C C TPO 161 C TPO 160 1_555 C N HIS 162 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 F NA NA . A NA 302 1_555 O O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? metalc ? metalc2 F NA NA . A NA 302 1_555 O O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.152 ? metalc ? metalc3 B O MET 26 B MET 200 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc4 B O GLN 29 B GLN 203 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc5 B O ILE 32 B ILE 206 1_555 G NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc6 K NA NA . C NA 302 1_555 Q O HOH . C HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.008 ? metalc ? metalc7 D O MET 26 D MET 200 1_555 M NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc8 D O GLN 29 D GLN 203 1_555 M NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc9 D O ILE 32 D ILE 206 1_555 M NA NA . D NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6RIJ _atom_sites.fract_transf_matrix[1][1] 0.013829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000124 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 K4W A 1 301 3 K4W 469 . F 4 NA A 1 302 7 NA NA . G 4 NA B 1 501 5 NA NA . H 5 GOL B 1 502 1 GOL GOL . I 5 GOL B 1 503 2 GOL GOL . J 3 K4W C 1 301 4 K4W 469 . K 4 NA C 1 302 8 NA NA . L 5 GOL C 1 303 4 GOL GOL . M 4 NA D 1 501 4 NA NA . N 5 GOL D 1 502 3 GOL GOL . O 6 HOH A 1 401 142 HOH HOH . O 6 HOH A 2 402 123 HOH HOH . O 6 HOH A 3 403 115 HOH HOH . O 6 HOH A 4 404 2 HOH HOH . O 6 HOH A 5 405 122 HOH HOH . O 6 HOH A 6 406 49 HOH HOH . O 6 HOH A 7 407 62 HOH HOH . O 6 HOH A 8 408 78 HOH HOH . O 6 HOH A 9 409 117 HOH HOH . O 6 HOH A 10 410 186 HOH HOH . O 6 HOH A 11 411 107 HOH HOH . O 6 HOH A 12 412 56 HOH HOH . O 6 HOH A 13 413 47 HOH HOH . O 6 HOH A 14 414 67 HOH HOH . O 6 HOH A 15 415 126 HOH HOH . O 6 HOH A 16 416 34 HOH HOH . O 6 HOH A 17 417 30 HOH HOH . O 6 HOH A 18 418 25 HOH HOH . O 6 HOH A 19 419 150 HOH HOH . O 6 HOH A 20 420 65 HOH HOH . O 6 HOH A 21 421 75 HOH HOH . O 6 HOH A 22 422 51 HOH HOH . O 6 HOH A 23 423 137 HOH HOH . O 6 HOH A 24 424 172 HOH HOH . O 6 HOH A 25 425 1 HOH HOH . O 6 HOH A 26 426 106 HOH HOH . O 6 HOH A 27 427 135 HOH HOH . O 6 HOH A 28 428 17 HOH HOH . O 6 HOH A 29 429 24 HOH HOH . O 6 HOH A 30 430 173 HOH HOH . O 6 HOH A 31 431 23 HOH HOH . O 6 HOH A 32 432 149 HOH HOH . O 6 HOH A 33 433 26 HOH HOH . O 6 HOH A 34 434 183 HOH HOH . O 6 HOH A 35 435 15 HOH HOH . O 6 HOH A 36 436 40 HOH HOH . O 6 HOH A 37 437 58 HOH HOH . O 6 HOH A 38 438 124 HOH HOH . O 6 HOH A 39 439 145 HOH HOH . O 6 HOH A 40 440 7 HOH HOH . O 6 HOH A 41 441 45 HOH HOH . O 6 HOH A 42 442 141 HOH HOH . O 6 HOH A 43 443 119 HOH HOH . O 6 HOH A 44 444 20 HOH HOH . O 6 HOH A 45 445 118 HOH HOH . O 6 HOH A 46 446 8 HOH HOH . O 6 HOH A 47 447 161 HOH HOH . O 6 HOH A 48 448 101 HOH HOH . P 6 HOH B 1 601 76 HOH HOH . P 6 HOH B 2 602 81 HOH HOH . P 6 HOH B 3 603 73 HOH HOH . P 6 HOH B 4 604 71 HOH HOH . P 6 HOH B 5 605 11 HOH HOH . P 6 HOH B 6 606 121 HOH HOH . P 6 HOH B 7 607 88 HOH HOH . P 6 HOH B 8 608 125 HOH HOH . P 6 HOH B 9 609 79 HOH HOH . P 6 HOH B 10 610 180 HOH HOH . P 6 HOH B 11 611 19 HOH HOH . P 6 HOH B 12 612 129 HOH HOH . P 6 HOH B 13 613 12 HOH HOH . P 6 HOH B 14 614 163 HOH HOH . P 6 HOH B 15 615 63 HOH HOH . P 6 HOH B 16 616 91 HOH HOH . P 6 HOH B 17 617 158 HOH HOH . P 6 HOH B 18 618 72 HOH HOH . P 6 HOH B 19 619 77 HOH HOH . P 6 HOH B 20 620 94 HOH HOH . P 6 HOH B 21 621 59 HOH HOH . P 6 HOH B 22 622 13 HOH HOH . P 6 HOH B 23 623 185 HOH HOH . P 6 HOH B 24 624 41 HOH HOH . P 6 HOH B 25 625 157 HOH HOH . P 6 HOH B 26 626 28 HOH HOH . P 6 HOH B 27 627 139 HOH HOH . P 6 HOH B 28 628 89 HOH HOH . P 6 HOH B 29 629 97 HOH HOH . P 6 HOH B 30 630 16 HOH HOH . P 6 HOH B 31 631 120 HOH HOH . P 6 HOH B 32 632 22 HOH HOH . P 6 HOH B 33 633 90 HOH HOH . P 6 HOH B 34 634 138 HOH HOH . P 6 HOH B 35 635 33 HOH HOH . P 6 HOH B 36 636 98 HOH HOH . P 6 HOH B 37 637 127 HOH HOH . P 6 HOH B 38 638 66 HOH HOH . P 6 HOH B 39 639 96 HOH HOH . P 6 HOH B 40 640 92 HOH HOH . P 6 HOH B 41 641 181 HOH HOH . Q 6 HOH C 1 401 144 HOH HOH . Q 6 HOH C 2 402 50 HOH HOH . Q 6 HOH C 3 403 130 HOH HOH . Q 6 HOH C 4 404 109 HOH HOH . Q 6 HOH C 5 405 64 HOH HOH . Q 6 HOH C 6 406 38 HOH HOH . Q 6 HOH C 7 407 159 HOH HOH . Q 6 HOH C 8 408 53 HOH HOH . Q 6 HOH C 9 409 9 HOH HOH . Q 6 HOH C 10 410 113 HOH HOH . Q 6 HOH C 11 411 39 HOH HOH . Q 6 HOH C 12 412 165 HOH HOH . Q 6 HOH C 13 413 132 HOH HOH . Q 6 HOH C 14 414 174 HOH HOH . Q 6 HOH C 15 415 110 HOH HOH . Q 6 HOH C 16 416 27 HOH HOH . Q 6 HOH C 17 417 155 HOH HOH . Q 6 HOH C 18 418 32 HOH HOH . Q 6 HOH C 19 419 177 HOH HOH . Q 6 HOH C 20 420 54 HOH HOH . Q 6 HOH C 21 421 35 HOH HOH . Q 6 HOH C 22 422 55 HOH HOH . Q 6 HOH C 23 423 46 HOH HOH . Q 6 HOH C 24 424 131 HOH HOH . Q 6 HOH C 25 425 10 HOH HOH . Q 6 HOH C 26 426 14 HOH HOH . Q 6 HOH C 27 427 31 HOH HOH . Q 6 HOH C 28 428 6 HOH HOH . Q 6 HOH C 29 429 61 HOH HOH . Q 6 HOH C 30 430 114 HOH HOH . Q 6 HOH C 31 431 151 HOH HOH . Q 6 HOH C 32 432 57 HOH HOH . Q 6 HOH C 33 433 4 HOH HOH . Q 6 HOH C 34 434 133 HOH HOH . Q 6 HOH C 35 435 111 HOH HOH . Q 6 HOH C 36 436 52 HOH HOH . Q 6 HOH C 37 437 143 HOH HOH . Q 6 HOH C 38 438 3 HOH HOH . Q 6 HOH C 39 439 154 HOH HOH . Q 6 HOH C 40 440 108 HOH HOH . Q 6 HOH C 41 441 162 HOH HOH . Q 6 HOH C 42 442 102 HOH HOH . Q 6 HOH C 43 443 134 HOH HOH . R 6 HOH D 1 601 80 HOH HOH . R 6 HOH D 2 602 182 HOH HOH . R 6 HOH D 3 603 112 HOH HOH . R 6 HOH D 4 604 166 HOH HOH . R 6 HOH D 5 605 83 HOH HOH . R 6 HOH D 6 606 103 HOH HOH . R 6 HOH D 7 607 170 HOH HOH . R 6 HOH D 8 608 136 HOH HOH . R 6 HOH D 9 609 93 HOH HOH . R 6 HOH D 10 610 74 HOH HOH . R 6 HOH D 11 611 128 HOH HOH . R 6 HOH D 12 612 60 HOH HOH . R 6 HOH D 13 613 42 HOH HOH . R 6 HOH D 14 614 18 HOH HOH . R 6 HOH D 15 615 68 HOH HOH . R 6 HOH D 16 616 99 HOH HOH . R 6 HOH D 17 617 184 HOH HOH . R 6 HOH D 18 618 85 HOH HOH . R 6 HOH D 19 619 87 HOH HOH . R 6 HOH D 20 620 5 HOH HOH . R 6 HOH D 21 621 104 HOH HOH . R 6 HOH D 22 622 48 HOH HOH . R 6 HOH D 23 623 176 HOH HOH . R 6 HOH D 24 624 95 HOH HOH . R 6 HOH D 25 625 147 HOH HOH . R 6 HOH D 26 626 37 HOH HOH . R 6 HOH D 27 627 36 HOH HOH . R 6 HOH D 28 628 116 HOH HOH . R 6 HOH D 29 629 148 HOH HOH . R 6 HOH D 30 630 21 HOH HOH . R 6 HOH D 31 631 84 HOH HOH . R 6 HOH D 32 632 164 HOH HOH . R 6 HOH D 33 633 146 HOH HOH . R 6 HOH D 34 634 169 HOH HOH . R 6 HOH D 35 635 100 HOH HOH . R 6 HOH D 36 636 29 HOH HOH . R 6 HOH D 37 637 168 HOH HOH . R 6 HOH D 38 638 175 HOH HOH . R 6 HOH D 39 639 69 HOH HOH . R 6 HOH D 40 640 167 HOH HOH . R 6 HOH D 41 641 105 HOH HOH . R 6 HOH D 42 642 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 5 1.981 34.128 46.559 1 70.85 ? C1 GOL 303 C 1 HETATM 2 O O1 GOL . . . L 5 0.851 34.767 45.986 1 58.38 ? O1 GOL 303 C 1 HETATM 3 C C2 GOL . . . L 5 3.039 35.229 46.555 1 71.91 ? C2 GOL 303 C 1 HETATM 4 O O2 GOL . . . L 5 3.436 35.525 45.213 1 71.4 ? O2 GOL 303 C 1 HETATM 5 C C3 GOL . . . L 5 4.229 34.818 47.427 1 72.86 ? C3 GOL 303 C 1 HETATM 6 O O3 GOL . . . L 5 3.957 35.139 48.807 1 61.96 ? O3 GOL 303 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #