data_6RIT # _model_server_result.job_id LtS6V9NJMQF8o02YLCdtdg _model_server_result.datetime_utc '2024-11-22 19:07:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rit # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6RIT # _exptl.entry_id 6RIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.59 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURY (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.43 _cell.angle_gamma 90 _cell.entry_id 6RIT _cell.length_a 42.474 _cell.length_b 41.639 _cell.length_c 72.527 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 99 A HIS 94 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc2 A NE2 HIS 101 A HIS 96 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc3 A ND1 HIS 124 A HIS 119 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc4 A O VAL 139 A VAL 135 1_555 D HG HG . A HG 303 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.155 ? metalc ? metalc5 A O GLN 141 A GLN 137 1_555 F HG BE7 . A BE7 305 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.802 ? metalc ? metalc6 A O GLU 209 A GLU 205 1_555 F HG BE7 . A BE7 305 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.997 ? metalc ? metalc7 A SG CYS 210 A CYS 206 1_555 D HG HG . A HG 303 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.389 ? metalc ? metalc8 A SG CYS 210 A CYS 206 1_555 F HG BE7 . A BE7 305 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.368 ? metalc ? metalc9 D HG HG . A HG 303 1_555 J O HOH . A HOH 535 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc10 E ZN ZN . A ZN 304 1_555 G N2 FBV . A FBV 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc11 F HG BE7 . A BE7 305 1_555 J O HOH . A HOH 535 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.953 ? # _chem_comp.formula 'Hg 2' _chem_comp.formula_weight 200.59 _chem_comp.id HG _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURY (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RIT _atom_sites.fract_transf_matrix[1][1] 0.023544 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006057 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BGC A 1 301 1 BGC BGC . C 2 BGC A 1 302 2 BGC BGC . D 3 HG A 1 303 1 HG HG . E 4 ZN A 1 304 1 ZN ZN . F 5 BE7 A 1 305 1 BE7 BE7 . G 6 FBV A 1 306 1 FBV FBV . H 6 FBV A 1 307 2 FBV FBV . I 7 GLC A 1 308 1 GLC GLC . J 8 HOH A 1 401 58 HOH HOH . J 8 HOH A 2 402 198 HOH HOH . J 8 HOH A 3 403 173 HOH HOH . J 8 HOH A 4 404 117 HOH HOH . J 8 HOH A 5 405 148 HOH HOH . J 8 HOH A 6 406 125 HOH HOH . J 8 HOH A 7 407 134 HOH HOH . J 8 HOH A 8 408 205 HOH HOH . J 8 HOH A 9 409 223 HOH HOH . J 8 HOH A 10 410 135 HOH HOH . J 8 HOH A 11 411 5 HOH HOH . J 8 HOH A 12 412 96 HOH HOH . J 8 HOH A 13 413 144 HOH HOH . J 8 HOH A 14 414 3 HOH HOH . J 8 HOH A 15 415 10 HOH HOH . J 8 HOH A 16 416 97 HOH HOH . J 8 HOH A 17 417 41 HOH HOH . J 8 HOH A 18 418 174 HOH HOH . J 8 HOH A 19 419 189 HOH HOH . J 8 HOH A 20 420 231 HOH HOH . J 8 HOH A 21 421 165 HOH HOH . J 8 HOH A 22 422 119 HOH HOH . J 8 HOH A 23 423 150 HOH HOH . J 8 HOH A 24 424 42 HOH HOH . J 8 HOH A 25 425 187 HOH HOH . J 8 HOH A 26 426 36 HOH HOH . J 8 HOH A 27 427 99 HOH HOH . J 8 HOH A 28 428 111 HOH HOH . J 8 HOH A 29 429 39 HOH HOH . J 8 HOH A 30 430 70 HOH HOH . J 8 HOH A 31 431 66 HOH HOH . J 8 HOH A 32 432 133 HOH HOH . J 8 HOH A 33 433 92 HOH HOH . J 8 HOH A 34 434 37 HOH HOH . J 8 HOH A 35 435 87 HOH HOH . J 8 HOH A 36 436 59 HOH HOH . J 8 HOH A 37 437 228 HOH HOH . J 8 HOH A 38 438 197 HOH HOH . J 8 HOH A 39 439 4 HOH HOH . J 8 HOH A 40 440 22 HOH HOH . J 8 HOH A 41 441 33 HOH HOH . J 8 HOH A 42 442 50 HOH HOH . J 8 HOH A 43 443 213 HOH HOH . J 8 HOH A 44 444 8 HOH HOH . J 8 HOH A 45 445 202 HOH HOH . J 8 HOH A 46 446 112 HOH HOH . J 8 HOH A 47 447 206 HOH HOH . J 8 HOH A 48 448 31 HOH HOH . J 8 HOH A 49 449 149 HOH HOH . J 8 HOH A 50 450 168 HOH HOH . J 8 HOH A 51 451 40 HOH HOH . J 8 HOH A 52 452 188 HOH HOH . J 8 HOH A 53 453 124 HOH HOH . J 8 HOH A 54 454 115 HOH HOH . J 8 HOH A 55 455 196 HOH HOH . J 8 HOH A 56 456 84 HOH HOH . J 8 HOH A 57 457 56 HOH HOH . J 8 HOH A 58 458 30 HOH HOH . J 8 HOH A 59 459 28 HOH HOH . J 8 HOH A 60 460 77 HOH HOH . J 8 HOH A 61 461 145 HOH HOH . J 8 HOH A 62 462 137 HOH HOH . J 8 HOH A 63 463 229 HOH HOH . J 8 HOH A 64 464 32 HOH HOH . J 8 HOH A 65 465 65 HOH HOH . J 8 HOH A 66 466 6 HOH HOH . J 8 HOH A 67 467 25 HOH HOH . J 8 HOH A 68 468 90 HOH HOH . J 8 HOH A 69 469 35 HOH HOH . J 8 HOH A 70 470 236 HOH HOH . J 8 HOH A 71 471 48 HOH HOH . J 8 HOH A 72 472 14 HOH HOH . J 8 HOH A 73 473 45 HOH HOH . J 8 HOH A 74 474 172 HOH HOH . J 8 HOH A 75 475 94 HOH HOH . J 8 HOH A 76 476 113 HOH HOH . J 8 HOH A 77 477 13 HOH HOH . J 8 HOH A 78 478 52 HOH HOH . J 8 HOH A 79 479 21 HOH HOH . J 8 HOH A 80 480 71 HOH HOH . J 8 HOH A 81 481 121 HOH HOH . J 8 HOH A 82 482 166 HOH HOH . J 8 HOH A 83 483 160 HOH HOH . J 8 HOH A 84 484 7 HOH HOH . J 8 HOH A 85 485 93 HOH HOH . J 8 HOH A 86 486 51 HOH HOH . J 8 HOH A 87 487 89 HOH HOH . J 8 HOH A 88 488 15 HOH HOH . J 8 HOH A 89 489 122 HOH HOH . J 8 HOH A 90 490 69 HOH HOH . J 8 HOH A 91 491 226 HOH HOH . J 8 HOH A 92 492 64 HOH HOH . J 8 HOH A 93 493 157 HOH HOH . J 8 HOH A 94 494 26 HOH HOH . J 8 HOH A 95 495 53 HOH HOH . J 8 HOH A 96 496 128 HOH HOH . J 8 HOH A 97 497 9 HOH HOH . J 8 HOH A 98 498 83 HOH HOH . J 8 HOH A 99 499 49 HOH HOH . J 8 HOH A 100 500 18 HOH HOH . J 8 HOH A 101 501 43 HOH HOH . J 8 HOH A 102 502 204 HOH HOH . J 8 HOH A 103 503 20 HOH HOH . J 8 HOH A 104 504 161 HOH HOH . J 8 HOH A 105 505 86 HOH HOH . J 8 HOH A 106 506 47 HOH HOH . J 8 HOH A 107 507 24 HOH HOH . J 8 HOH A 108 508 67 HOH HOH . J 8 HOH A 109 509 19 HOH HOH . J 8 HOH A 110 510 207 HOH HOH . J 8 HOH A 111 511 74 HOH HOH . J 8 HOH A 112 512 75 HOH HOH . J 8 HOH A 113 513 164 HOH HOH . J 8 HOH A 114 514 153 HOH HOH . J 8 HOH A 115 515 104 HOH HOH . J 8 HOH A 116 516 108 HOH HOH . J 8 HOH A 117 517 81 HOH HOH . J 8 HOH A 118 518 54 HOH HOH . J 8 HOH A 119 519 17 HOH HOH . J 8 HOH A 120 520 110 HOH HOH . J 8 HOH A 121 521 27 HOH HOH . J 8 HOH A 122 522 85 HOH HOH . J 8 HOH A 123 523 118 HOH HOH . J 8 HOH A 124 524 62 HOH HOH . J 8 HOH A 125 525 203 HOH HOH . J 8 HOH A 126 526 199 HOH HOH . J 8 HOH A 127 527 120 HOH HOH . J 8 HOH A 128 528 95 HOH HOH . J 8 HOH A 129 529 16 HOH HOH . J 8 HOH A 130 530 79 HOH HOH . J 8 HOH A 131 531 63 HOH HOH . J 8 HOH A 132 532 162 HOH HOH . J 8 HOH A 133 533 147 HOH HOH . J 8 HOH A 134 534 38 HOH HOH . J 8 HOH A 135 535 127 HOH HOH . J 8 HOH A 136 536 131 HOH HOH . J 8 HOH A 137 537 98 HOH HOH . J 8 HOH A 138 538 100 HOH HOH . J 8 HOH A 139 539 217 HOH HOH . J 8 HOH A 140 540 73 HOH HOH . J 8 HOH A 141 541 82 HOH HOH . J 8 HOH A 142 542 34 HOH HOH . J 8 HOH A 143 543 23 HOH HOH . J 8 HOH A 144 544 194 HOH HOH . J 8 HOH A 145 545 220 HOH HOH . J 8 HOH A 146 546 132 HOH HOH . J 8 HOH A 147 547 61 HOH HOH . J 8 HOH A 148 548 167 HOH HOH . J 8 HOH A 149 549 68 HOH HOH . J 8 HOH A 150 550 170 HOH HOH . J 8 HOH A 151 551 76 HOH HOH . J 8 HOH A 152 552 140 HOH HOH . J 8 HOH A 153 553 235 HOH HOH . J 8 HOH A 154 554 44 HOH HOH . J 8 HOH A 155 555 221 HOH HOH . J 8 HOH A 156 556 60 HOH HOH . J 8 HOH A 157 557 103 HOH HOH . J 8 HOH A 158 558 101 HOH HOH . J 8 HOH A 159 559 143 HOH HOH . J 8 HOH A 160 560 11 HOH HOH . J 8 HOH A 161 561 222 HOH HOH . J 8 HOH A 162 562 12 HOH HOH . J 8 HOH A 163 563 123 HOH HOH . J 8 HOH A 164 564 224 HOH HOH . J 8 HOH A 165 565 219 HOH HOH . J 8 HOH A 166 566 55 HOH HOH . J 8 HOH A 167 567 151 HOH HOH . J 8 HOH A 168 568 46 HOH HOH . J 8 HOH A 169 569 88 HOH HOH . J 8 HOH A 170 570 191 HOH HOH . J 8 HOH A 171 571 230 HOH HOH . J 8 HOH A 172 572 227 HOH HOH . J 8 HOH A 173 573 130 HOH HOH . J 8 HOH A 174 574 171 HOH HOH . J 8 HOH A 175 575 152 HOH HOH . J 8 HOH A 176 576 80 HOH HOH . J 8 HOH A 177 577 195 HOH HOH . J 8 HOH A 178 578 180 HOH HOH . J 8 HOH A 179 579 214 HOH HOH . J 8 HOH A 180 580 176 HOH HOH . J 8 HOH A 181 581 116 HOH HOH . J 8 HOH A 182 582 136 HOH HOH . J 8 HOH A 183 583 200 HOH HOH . J 8 HOH A 184 584 29 HOH HOH . J 8 HOH A 185 585 177 HOH HOH . J 8 HOH A 186 586 183 HOH HOH . J 8 HOH A 187 587 209 HOH HOH . J 8 HOH A 188 588 138 HOH HOH . J 8 HOH A 189 589 175 HOH HOH . J 8 HOH A 190 590 169 HOH HOH . J 8 HOH A 191 591 238 HOH HOH . J 8 HOH A 192 592 106 HOH HOH . J 8 HOH A 193 593 212 HOH HOH . J 8 HOH A 194 594 114 HOH HOH . J 8 HOH A 195 595 146 HOH HOH . J 8 HOH A 196 596 232 HOH HOH . J 8 HOH A 197 597 182 HOH HOH . J 8 HOH A 198 598 186 HOH HOH . J 8 HOH A 199 599 139 HOH HOH . J 8 HOH A 200 600 109 HOH HOH . J 8 HOH A 201 601 57 HOH HOH . J 8 HOH A 202 602 154 HOH HOH . J 8 HOH A 203 603 233 HOH HOH . J 8 HOH A 204 604 178 HOH HOH . J 8 HOH A 205 605 216 HOH HOH . J 8 HOH A 206 606 107 HOH HOH . J 8 HOH A 207 607 159 HOH HOH . J 8 HOH A 208 608 193 HOH HOH . J 8 HOH A 209 609 105 HOH HOH . J 8 HOH A 210 610 156 HOH HOH . J 8 HOH A 211 611 184 HOH HOH . J 8 HOH A 212 612 215 HOH HOH . J 8 HOH A 213 613 91 HOH HOH . J 8 HOH A 214 614 158 HOH HOH . J 8 HOH A 215 615 129 HOH HOH . J 8 HOH A 216 616 179 HOH HOH . J 8 HOH A 217 617 237 HOH HOH . J 8 HOH A 218 618 192 HOH HOH . J 8 HOH A 219 619 102 HOH HOH . J 8 HOH A 220 620 163 HOH HOH . J 8 HOH A 221 621 181 HOH HOH . J 8 HOH A 222 622 78 HOH HOH . J 8 HOH A 223 623 185 HOH HOH . J 8 HOH A 224 624 142 HOH HOH . J 8 HOH A 225 625 141 HOH HOH . J 8 HOH A 226 626 225 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol HG _atom_site.label_atom_id HG _atom_site.label_comp_id HG _atom_site.label_seq_id . _atom_site.label_alt_id B _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -2.072 _atom_site.Cartn_y 10.883 _atom_site.Cartn_z 23.512 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 10.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id HG _atom_site.auth_comp_id HG _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #