data_6RJZ # _model_server_result.job_id QqFdsDd3LB7V00M2YC-EuQ _model_server_result.datetime_utc '2024-11-16 15:41:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rjz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 6RJZ # _exptl.entry_id 6RJZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 268.337 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-(6-azanylpyridin-2-yl)-1-benzothiophene-2-carboximidamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RJZ _cell.length_a 81.914 _cell.length_b 112.563 _cell.length_c 62.662 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RJZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 42 A SER 37 1_555 A N CSO 43 A CSO 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CSO 43 A CSO 38 1_555 A N GLU 44 A GLU 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale3 B C LYS 5 P LYS 386 1_555 B N TPO 6 P TPO 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 B C TPO 6 P TPO 387 1_555 B N GLU 7 P GLU 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A OE1 GLU 40 A GLU 35 1_555 C MG MG . A MG 301 6_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc2 A OE2 GLU 40 A GLU 35 1_555 C MG MG . A MG 301 6_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc3 A OE2 GLU 94 A GLU 89 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc4 A O GLU 115 A GLU 110 1_555 C MG MG . A MG 301 6_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc5 A OE2 GLU 193 A GLU 188 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 C MG MG . A MG 301 1_555 H O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc7 C MG MG . A MG 301 1_555 H O HOH . A HOH 518 6_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc8 D MG MG . A MG 302 1_555 H O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? # _chem_comp.formula 'C14 H12 N4 S' _chem_comp.formula_weight 268.337 _chem_comp.id K6B _chem_comp.mon_nstd_flag . _chem_comp.name 7-(6-azanylpyridin-2-yl)-1-benzothiophene-2-carboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C09 C10 K6B doub 200 n y C09 C03 K6B sing 201 n y C10 C11 K6B sing 202 n y C04 C03 K6B sing 203 n y C04 C05 K6B doub 204 n y C03 C02 K6B doub 205 n y N08 C06 K6B sing 206 n n C11 C12 K6B doub 207 n y C05 C06 K6B sing 208 n n C05 S01 K6B sing 209 n y C06 N07 K6B doub 210 n n C02 C12 K6B sing 211 n y C02 S01 K6B sing 212 n y C12 C13 K6B sing 213 n n C13 C18 K6B doub 214 n y C13 N14 K6B sing 215 n y C18 C17 K6B sing 216 n y N14 C15 K6B doub 217 n y C17 C16 K6B doub 218 n y C15 C16 K6B sing 219 n y C15 N19 K6B sing 220 n n C10 H101 K6B sing 221 n n C17 H171 K6B sing 222 n n C04 H041 K6B sing 223 n n C09 H091 K6B sing 224 n n C11 H111 K6B sing 225 n n C16 H161 K6B sing 226 n n C18 H181 K6B sing 227 n n N07 H071 K6B sing 228 n n N08 H081 K6B sing 229 n n N08 H1 K6B sing 230 n n N19 H192 K6B sing 231 n n N19 H191 K6B sing 232 n n # _atom_sites.entry_id 6RJZ _atom_sites.fract_transf_matrix[1][1] 0.012208 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 301 301 MG MG . D 3 MG A 1 302 302 MG MG . E 4 CL A 1 303 303 CL CL . F 5 GOL A 1 304 304 GOL GOL . G 6 K6B A 1 305 305 K6B K6B . H 7 HOH A 1 401 401 HOH HOH . H 7 HOH A 2 402 402 HOH HOH . H 7 HOH A 3 403 403 HOH HOH . H 7 HOH A 4 404 405 HOH HOH . H 7 HOH A 5 405 406 HOH HOH . H 7 HOH A 6 406 407 HOH HOH . H 7 HOH A 7 407 408 HOH HOH . H 7 HOH A 8 408 409 HOH HOH . H 7 HOH A 9 409 410 HOH HOH . H 7 HOH A 10 410 411 HOH HOH . H 7 HOH A 11 411 404 HOH HOH . H 7 HOH A 12 412 412 HOH HOH . H 7 HOH A 13 413 413 HOH HOH . H 7 HOH A 14 414 414 HOH HOH . H 7 HOH A 15 415 415 HOH HOH . H 7 HOH A 16 416 416 HOH HOH . H 7 HOH A 17 417 417 HOH HOH . H 7 HOH A 18 418 418 HOH HOH . H 7 HOH A 19 419 419 HOH HOH . H 7 HOH A 20 420 420 HOH HOH . H 7 HOH A 21 421 421 HOH HOH . H 7 HOH A 22 422 422 HOH HOH . H 7 HOH A 23 423 423 HOH HOH . H 7 HOH A 24 424 424 HOH HOH . H 7 HOH A 25 425 425 HOH HOH . H 7 HOH A 26 426 426 HOH HOH . H 7 HOH A 27 427 427 HOH HOH . H 7 HOH A 28 428 428 HOH HOH . H 7 HOH A 29 429 429 HOH HOH . H 7 HOH A 30 430 430 HOH HOH . H 7 HOH A 31 431 431 HOH HOH . H 7 HOH A 32 432 432 HOH HOH . H 7 HOH A 33 433 433 HOH HOH . H 7 HOH A 34 434 434 HOH HOH . H 7 HOH A 35 435 435 HOH HOH . H 7 HOH A 36 436 436 HOH HOH . H 7 HOH A 37 437 437 HOH HOH . H 7 HOH A 38 438 438 HOH HOH . H 7 HOH A 39 439 439 HOH HOH . H 7 HOH A 40 440 440 HOH HOH . H 7 HOH A 41 441 441 HOH HOH . H 7 HOH A 42 442 442 HOH HOH . H 7 HOH A 43 443 443 HOH HOH . H 7 HOH A 44 444 444 HOH HOH . H 7 HOH A 45 445 445 HOH HOH . H 7 HOH A 46 446 447 HOH HOH . H 7 HOH A 47 447 448 HOH HOH . H 7 HOH A 48 448 449 HOH HOH . H 7 HOH A 49 449 450 HOH HOH . H 7 HOH A 50 450 451 HOH HOH . H 7 HOH A 51 451 446 HOH HOH . H 7 HOH A 52 452 452 HOH HOH . H 7 HOH A 53 453 453 HOH HOH . H 7 HOH A 54 454 454 HOH HOH . H 7 HOH A 55 455 455 HOH HOH . H 7 HOH A 56 456 456 HOH HOH . H 7 HOH A 57 457 457 HOH HOH . H 7 HOH A 58 458 458 HOH HOH . H 7 HOH A 59 459 459 HOH HOH . H 7 HOH A 60 460 460 HOH HOH . H 7 HOH A 61 461 461 HOH HOH . H 7 HOH A 62 462 462 HOH HOH . H 7 HOH A 63 463 463 HOH HOH . H 7 HOH A 64 464 464 HOH HOH . H 7 HOH A 65 465 465 HOH HOH . H 7 HOH A 66 466 466 HOH HOH . H 7 HOH A 67 467 467 HOH HOH . H 7 HOH A 68 468 468 HOH HOH . H 7 HOH A 69 469 469 HOH HOH . H 7 HOH A 70 470 470 HOH HOH . H 7 HOH A 71 471 471 HOH HOH . H 7 HOH A 72 472 472 HOH HOH . H 7 HOH A 73 473 473 HOH HOH . H 7 HOH A 74 474 474 HOH HOH . H 7 HOH A 75 475 475 HOH HOH . H 7 HOH A 76 476 476 HOH HOH . H 7 HOH A 77 477 477 HOH HOH . H 7 HOH A 78 478 478 HOH HOH . H 7 HOH A 79 479 479 HOH HOH . H 7 HOH A 80 480 480 HOH HOH . H 7 HOH A 81 481 481 HOH HOH . H 7 HOH A 82 482 482 HOH HOH . H 7 HOH A 83 483 483 HOH HOH . H 7 HOH A 84 484 484 HOH HOH . H 7 HOH A 85 485 485 HOH HOH . H 7 HOH A 86 486 487 HOH HOH . H 7 HOH A 87 487 488 HOH HOH . H 7 HOH A 88 488 489 HOH HOH . H 7 HOH A 89 489 486 HOH HOH . H 7 HOH A 90 490 490 HOH HOH . H 7 HOH A 91 491 491 HOH HOH . H 7 HOH A 92 492 492 HOH HOH . H 7 HOH A 93 493 493 HOH HOH . H 7 HOH A 94 494 494 HOH HOH . H 7 HOH A 95 495 495 HOH HOH . H 7 HOH A 96 496 496 HOH HOH . H 7 HOH A 97 497 497 HOH HOH . H 7 HOH A 98 498 498 HOH HOH . H 7 HOH A 99 499 499 HOH HOH . H 7 HOH A 100 500 500 HOH HOH . H 7 HOH A 101 501 501 HOH HOH . H 7 HOH A 102 502 502 HOH HOH . H 7 HOH A 103 503 503 HOH HOH . H 7 HOH A 104 504 504 HOH HOH . H 7 HOH A 105 505 505 HOH HOH . H 7 HOH A 106 506 506 HOH HOH . H 7 HOH A 107 507 507 HOH HOH . H 7 HOH A 108 508 508 HOH HOH . H 7 HOH A 109 509 509 HOH HOH . H 7 HOH A 110 510 510 HOH HOH . H 7 HOH A 111 511 511 HOH HOH . H 7 HOH A 112 512 512 HOH HOH . H 7 HOH A 113 513 513 HOH HOH . H 7 HOH A 114 514 514 HOH HOH . H 7 HOH A 115 515 515 HOH HOH . H 7 HOH A 116 516 516 HOH HOH . H 7 HOH A 117 517 517 HOH HOH . H 7 HOH A 118 518 518 HOH HOH . H 7 HOH A 119 519 519 HOH HOH . H 7 HOH A 120 520 520 HOH HOH . H 7 HOH A 121 521 521 HOH HOH . H 7 HOH A 122 522 522 HOH HOH . H 7 HOH A 123 523 523 HOH HOH . H 7 HOH A 124 524 524 HOH HOH . H 7 HOH A 125 525 525 HOH HOH . H 7 HOH A 126 526 526 HOH HOH . H 7 HOH A 127 527 527 HOH HOH . H 7 HOH A 128 528 528 HOH HOH . H 7 HOH A 129 529 529 HOH HOH . H 7 HOH A 130 530 530 HOH HOH . H 7 HOH A 131 531 531 HOH HOH . H 7 HOH A 132 532 532 HOH HOH . H 7 HOH A 133 533 534 HOH HOH . H 7 HOH A 134 534 533 HOH HOH . H 7 HOH A 135 535 535 HOH HOH . H 7 HOH A 136 536 536 HOH HOH . H 7 HOH A 137 537 537 HOH HOH . H 7 HOH A 138 538 539 HOH HOH . H 7 HOH A 139 539 538 HOH HOH . H 7 HOH A 140 540 540 HOH HOH . H 7 HOH A 141 541 541 HOH HOH . H 7 HOH A 142 542 542 HOH HOH . H 7 HOH A 143 543 543 HOH HOH . H 7 HOH A 144 544 544 HOH HOH . H 7 HOH A 145 545 545 HOH HOH . H 7 HOH A 146 546 546 HOH HOH . I 7 HOH P 1 401 401 HOH HOH . I 7 HOH P 2 402 402 HOH HOH . I 7 HOH P 3 403 403 HOH HOH . I 7 HOH P 4 404 404 HOH HOH . I 7 HOH P 5 405 405 HOH HOH . I 7 HOH P 6 406 406 HOH HOH . I 7 HOH P 7 407 407 HOH HOH . I 7 HOH P 8 408 408 HOH HOH . I 7 HOH P 9 409 409 HOH HOH . I 7 HOH P 10 410 410 HOH HOH . I 7 HOH P 11 411 411 HOH HOH . I 7 HOH P 12 412 412 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 K6B . . . G 6 -18.753 22.105 4.909 1 36.64 ? C10 K6B 305 A 1 HETATM 2 C C13 K6B . . . G 6 -19.908 22.318 8.403 1 37.15 ? C13 K6B 305 A 1 HETATM 3 C C15 K6B . . . G 6 -20.022 22.048 10.716 1 40.57 ? C15 K6B 305 A 1 HETATM 4 C C17 K6B . . . G 6 -20.654 24.152 9.745 1 32.33 ? C17 K6B 305 A 1 HETATM 5 C C02 K6B . . . G 6 -19.747 20.39 6.882 1 36.87 ? C02 K6B 305 A 1 HETATM 6 C C03 K6B . . . G 6 -19.416 19.882 5.643 1 38.48 ? C03 K6B 305 A 1 HETATM 7 C C04 K6B . . . G 6 -19.628 18.475 5.491 1 31.98 ? C04 K6B 305 A 1 HETATM 8 C C05 K6B . . . G 6 -20.129 17.827 6.606 1 38.17 ? C05 K6B 305 A 1 HETATM 9 C C06 K6B . . . G 6 -20.455 16.33 6.764 1 36.07 ? C06 K6B 305 A 1 HETATM 10 C C09 K6B . . . G 6 -18.905 20.757 4.647 1 36.04 ? C09 K6B 305 A 1 HETATM 11 C C11 K6B . . . G 6 -19.093 22.613 6.159 1 35.6 ? C11 K6B 305 A 1 HETATM 12 C C12 K6B . . . G 6 -19.59 21.768 7.156 1 32.53 ? C12 K6B 305 A 1 HETATM 13 C C16 K6B . . . G 6 -20.489 23.35 10.867 1 34.55 ? C16 K6B 305 A 1 HETATM 14 C C18 K6B . . . G 6 -20.353 23.634 8.485 1 33.94 ? C18 K6B 305 A 1 HETATM 15 N N07 K6B . . . G 6 -20.085 15.468 5.912 1 28.72 ? N07 K6B 305 A 1 HETATM 16 N N08 K6B . . . G 6 -21.187 15.895 7.947 1 29.35 ? N08 K6B 305 A 1 HETATM 17 N N14 K6B . . . G 6 -19.747 21.592 9.501 1 35.66 ? N14 K6B 305 A 1 HETATM 18 N N19 K6B . . . G 6 -19.835 21.181 11.876 1 36.01 ? N19 K6B 305 A 1 HETATM 19 S S01 K6B . . . G 6 -20.328 19.043 7.843 1 39.09 ? S01 K6B 305 A 1 HETATM 20 H H101 K6B . . . G 6 -18.422 22.671 4.251 1 44.13 ? H101 K6B 305 A 1 HETATM 21 H H171 K6B . . . G 6 -20.963 25.024 9.832 1 38.96 ? H171 K6B 305 A 1 HETATM 22 H H041 K6B . . . G 6 -19.436 18.026 4.7 1 38.54 ? H041 K6B 305 A 1 HETATM 23 H H091 K6B . . . G 6 -18.686 20.422 3.808 1 43.41 ? H091 K6B 305 A 1 HETATM 24 H H111 K6B . . . G 6 -18.981 23.518 6.335 1 42.88 ? H111 K6B 305 A 1 HETATM 25 H H161 K6B . . . G 6 -20.68 23.684 11.713 1 41.62 ? H161 K6B 305 A 1 HETATM 26 H H181 K6B . . . G 6 -20.463 24.149 7.72 1 40.89 ? H181 K6B 305 A 1 HETATM 27 H H071 K6B . . . G 6 -19.645 15.718 5.202 1 34.62 ? H071 K6B 305 A 1 HETATM 28 H H081 K6B . . . G 6 -21.377 15.055 8.055 1 35.38 ? H081 K6B 305 A 1 HETATM 29 H H1 K6B . . . G 6 -21.441 16.478 8.538 1 35.38 ? H1 K6B 305 A 1 HETATM 30 H H192 K6B . . . G 6 -20.356 20.508 11.998 1 43.38 ? H192 K6B 305 A 1 HETATM 31 H H191 K6B . . . G 6 -19.205 21.345 12.438 1 43.38 ? H191 K6B 305 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #