data_6RK8 # _model_server_result.job_id EBqtsiKedkpOIgEEiRZ0Ag _model_server_result.datetime_utc '2024-11-16 15:51:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6RK8 # _exptl.entry_id 6RK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RK8 _cell.length_a 82.264 _cell.length_b 112.131 _cell.length_c 62.878 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 42 A SER 37 1_555 A N CSO 43 A CSO 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CSO 43 A CSO 38 1_555 A N GLU 44 A GLU 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 B C LYS 5 P LYS 386 1_555 B N TPO 6 P TPO 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C TPO 6 P TPO 387 1_555 B N GLU 7 P GLU 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A OE1 GLU 40 A GLU 35 1_555 C MG MG . A MG 301 6_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc2 A OE2 GLU 40 A GLU 35 1_555 C MG MG . A MG 301 6_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc3 A OE2 GLU 94 A GLU 89 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc4 A O GLU 115 A GLU 110 1_555 C MG MG . A MG 301 6_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc5 A OE2 GLU 193 A GLU 188 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RK8 _atom_sites.fract_transf_matrix[1][1] 0.012156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 301 249 MG MG . D 3 MG A 1 302 250 MG MG . E 4 CL A 1 303 252 CL CL . F 5 K6N A 1 304 1 K6N LIG . G 6 HOH A 1 401 98 HOH HOH . G 6 HOH A 2 402 75 HOH HOH . G 6 HOH A 3 403 105 HOH HOH . G 6 HOH A 4 404 14 HOH HOH . G 6 HOH A 5 405 95 HOH HOH . G 6 HOH A 6 406 7 HOH HOH . G 6 HOH A 7 407 59 HOH HOH . G 6 HOH A 8 408 55 HOH HOH . G 6 HOH A 9 409 15 HOH HOH . G 6 HOH A 10 410 89 HOH HOH . G 6 HOH A 11 411 45 HOH HOH . G 6 HOH A 12 412 57 HOH HOH . G 6 HOH A 13 413 56 HOH HOH . G 6 HOH A 14 414 48 HOH HOH . G 6 HOH A 15 415 31 HOH HOH . G 6 HOH A 16 416 90 HOH HOH . G 6 HOH A 17 417 4 HOH HOH . G 6 HOH A 18 418 64 HOH HOH . G 6 HOH A 19 419 60 HOH HOH . G 6 HOH A 20 420 30 HOH HOH . G 6 HOH A 21 421 17 HOH HOH . G 6 HOH A 22 422 62 HOH HOH . G 6 HOH A 23 423 115 HOH HOH . G 6 HOH A 24 424 12 HOH HOH . G 6 HOH A 25 425 26 HOH HOH . G 6 HOH A 26 426 82 HOH HOH . G 6 HOH A 27 427 11 HOH HOH . G 6 HOH A 28 428 77 HOH HOH . G 6 HOH A 29 429 39 HOH HOH . G 6 HOH A 30 430 16 HOH HOH . G 6 HOH A 31 431 94 HOH HOH . G 6 HOH A 32 432 18 HOH HOH . G 6 HOH A 33 433 61 HOH HOH . G 6 HOH A 34 434 102 HOH HOH . G 6 HOH A 35 435 8 HOH HOH . G 6 HOH A 36 436 50 HOH HOH . G 6 HOH A 37 437 87 HOH HOH . G 6 HOH A 38 438 5 HOH HOH . G 6 HOH A 39 439 6 HOH HOH . G 6 HOH A 40 440 100 HOH HOH . G 6 HOH A 41 441 22 HOH HOH . G 6 HOH A 42 442 3 HOH HOH . G 6 HOH A 43 443 13 HOH HOH . G 6 HOH A 44 444 81 HOH HOH . G 6 HOH A 45 445 34 HOH HOH . G 6 HOH A 46 446 88 HOH HOH . G 6 HOH A 47 447 78 HOH HOH . G 6 HOH A 48 448 27 HOH HOH . G 6 HOH A 49 449 21 HOH HOH . G 6 HOH A 50 450 51 HOH HOH . G 6 HOH A 51 451 41 HOH HOH . G 6 HOH A 52 452 10 HOH HOH . G 6 HOH A 53 453 54 HOH HOH . G 6 HOH A 54 454 9 HOH HOH . G 6 HOH A 55 455 38 HOH HOH . G 6 HOH A 56 456 32 HOH HOH . G 6 HOH A 57 457 69 HOH HOH . G 6 HOH A 58 458 76 HOH HOH . G 6 HOH A 59 459 46 HOH HOH . G 6 HOH A 60 460 28 HOH HOH . G 6 HOH A 61 461 58 HOH HOH . G 6 HOH A 62 462 85 HOH HOH . G 6 HOH A 63 463 25 HOH HOH . G 6 HOH A 64 464 74 HOH HOH . G 6 HOH A 65 465 107 HOH HOH . G 6 HOH A 66 466 35 HOH HOH . G 6 HOH A 67 467 24 HOH HOH . G 6 HOH A 68 468 66 HOH HOH . G 6 HOH A 69 469 113 HOH HOH . G 6 HOH A 70 470 111 HOH HOH . G 6 HOH A 71 471 71 HOH HOH . G 6 HOH A 72 472 53 HOH HOH . G 6 HOH A 73 473 44 HOH HOH . G 6 HOH A 74 474 43 HOH HOH . G 6 HOH A 75 475 86 HOH HOH . G 6 HOH A 76 476 40 HOH HOH . G 6 HOH A 77 477 19 HOH HOH . G 6 HOH A 78 478 103 HOH HOH . G 6 HOH A 79 479 63 HOH HOH . G 6 HOH A 80 480 70 HOH HOH . G 6 HOH A 81 481 67 HOH HOH . G 6 HOH A 82 482 116 HOH HOH . G 6 HOH A 83 483 33 HOH HOH . G 6 HOH A 84 484 49 HOH HOH . G 6 HOH A 85 485 23 HOH HOH . G 6 HOH A 86 486 37 HOH HOH . G 6 HOH A 87 487 96 HOH HOH . G 6 HOH A 88 488 2 HOH HOH . G 6 HOH A 89 489 73 HOH HOH . G 6 HOH A 90 490 52 HOH HOH . G 6 HOH A 91 491 97 HOH HOH . G 6 HOH A 92 492 1 HOH HOH . G 6 HOH A 93 493 112 HOH HOH . G 6 HOH A 94 494 91 HOH HOH . G 6 HOH A 95 495 68 HOH HOH . G 6 HOH A 96 496 79 HOH HOH . G 6 HOH A 97 497 80 HOH HOH . G 6 HOH A 98 498 47 HOH HOH . G 6 HOH A 99 499 99 HOH HOH . G 6 HOH A 100 500 84 HOH HOH . G 6 HOH A 101 501 20 HOH HOH . G 6 HOH A 102 502 110 HOH HOH . G 6 HOH A 103 503 42 HOH HOH . G 6 HOH A 104 504 108 HOH HOH . G 6 HOH A 105 505 101 HOH HOH . G 6 HOH A 106 506 65 HOH HOH . G 6 HOH A 107 507 109 HOH HOH . G 6 HOH A 108 508 92 HOH HOH . G 6 HOH A 109 509 104 HOH HOH . G 6 HOH A 110 510 106 HOH HOH . G 6 HOH A 111 511 29 HOH HOH . H 6 HOH P 1 401 36 HOH HOH . H 6 HOH P 2 402 93 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -35.103 _atom_site.Cartn_y -4.18 _atom_site.Cartn_z 19.382 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.99 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #