data_6RKH # _model_server_result.job_id lH-2x1PpSSi5KgVorAiVhQ _model_server_result.datetime_utc '2024-10-19 03:48:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rkh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6RKH # _exptl.entry_id 6RKH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RKH _cell.length_a 39.244 _cell.length_b 95.646 _cell.length_c 119.969 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RKH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 AHR AHR C1 O1 . O5 HO5 . sing 2 ? 2 3 2 AHR AHR C1 O1 . O5 HO5 . sing 3 ? 2 4 3 AHR AHR C1 O1 . O5 HO5 . sing 4 ? 2 5 4 AHR AHR C1 O1 . O5 HO5 . sing 5 ? 2 6 5 AHR AHR C1 O1 . O5 HO5 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B AHR 1 B 1 AHR B 1 XYT 2 n B AHR 2 B 2 AHR B 1 XYT 2 n B AHR 3 B 3 AHR B 1 XYT 2 n B AHR 4 B 4 AHR B 1 XYT 2 n B AHR 5 B 5 AHR B 1 XYT 2 n B AHR 6 B 6 AHR B 1 XYT # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 17 A PHE 44 1_555 A N MSE 18 A MSE 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A C MSE 18 A MSE 45 1_555 A N PHE 19 A PHE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C THR 143 A THR 170 1_555 A N MSE 144 A MSE 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C MSE 144 A MSE 171 1_555 A N PHE 145 A PHE 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C ASP 229 A ASP 256 1_555 A N MSE 230 A MSE 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 230 A MSE 257 1_555 A N GLN 231 A GLN 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C SER 304 A SER 331 1_555 A N MSE 305 A MSE 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 A C MSE 305 A MSE 332 1_555 A N THR 306 A THR 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale9 A C LYS 396 A LYS 423 1_555 A N MSE 397 A MSE 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 A C MSE 397 A MSE 424 1_555 A N SER 398 A SER 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale11 A C LYS 409 A LYS 436 1_555 A N MSE 410 A MSE 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale12 A C MSE 410 A MSE 437 1_555 A N GLN 411 A GLN 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B O5 AHR . B AHR 1 1_555 B C1 AHR . B AHR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale14 B O5 AHR . B AHR 2 1_555 B C1 AHR . B AHR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale15 B O5 AHR . B AHR 3 1_555 B C1 AHR . B AHR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale16 B O5 AHR . B AHR 4 1_555 B C1 AHR . B AHR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale17 B O5 AHR . B AHR 5 1_555 B C1 AHR . B AHR 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? metalc ? metalc1 A OD1 ASP 174 A ASP 201 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc2 A OD1 ASN 176 A ASN 203 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc3 A OD1 ASP 178 A ASP 205 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 A O LYS 180 A LYS 207 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc5 A OD2 ASP 182 A ASP 209 1_555 C CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RKH _atom_sites.fract_transf_matrix[1][1] 0.025482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 501 1 CA CA . D 4 HOH A 1 601 109 HOH HOH . D 4 HOH A 2 602 136 HOH HOH . D 4 HOH A 3 603 64 HOH HOH . D 4 HOH A 4 604 195 HOH HOH . D 4 HOH A 5 605 186 HOH HOH . D 4 HOH A 6 606 68 HOH HOH . D 4 HOH A 7 607 73 HOH HOH . D 4 HOH A 8 608 75 HOH HOH . D 4 HOH A 9 609 156 HOH HOH . D 4 HOH A 10 610 77 HOH HOH . D 4 HOH A 11 611 24 HOH HOH . D 4 HOH A 12 612 43 HOH HOH . D 4 HOH A 13 613 44 HOH HOH . D 4 HOH A 14 614 8 HOH HOH . D 4 HOH A 15 615 2 HOH HOH . D 4 HOH A 16 616 183 HOH HOH . D 4 HOH A 17 617 125 HOH HOH . D 4 HOH A 18 618 5 HOH HOH . D 4 HOH A 19 619 10 HOH HOH . D 4 HOH A 20 620 151 HOH HOH . D 4 HOH A 21 621 135 HOH HOH . D 4 HOH A 22 622 192 HOH HOH . D 4 HOH A 23 623 146 HOH HOH . D 4 HOH A 24 624 52 HOH HOH . D 4 HOH A 25 625 20 HOH HOH . D 4 HOH A 26 626 48 HOH HOH . D 4 HOH A 27 627 171 HOH HOH . D 4 HOH A 28 628 95 HOH HOH . D 4 HOH A 29 629 172 HOH HOH . D 4 HOH A 30 630 54 HOH HOH . D 4 HOH A 31 631 206 HOH HOH . D 4 HOH A 32 632 25 HOH HOH . D 4 HOH A 33 633 13 HOH HOH . D 4 HOH A 34 634 158 HOH HOH . D 4 HOH A 35 635 66 HOH HOH . D 4 HOH A 36 636 14 HOH HOH . D 4 HOH A 37 637 83 HOH HOH . D 4 HOH A 38 638 55 HOH HOH . D 4 HOH A 39 639 39 HOH HOH . D 4 HOH A 40 640 144 HOH HOH . D 4 HOH A 41 641 27 HOH HOH . D 4 HOH A 42 642 15 HOH HOH . D 4 HOH A 43 643 3 HOH HOH . D 4 HOH A 44 644 17 HOH HOH . D 4 HOH A 45 645 97 HOH HOH . D 4 HOH A 46 646 7 HOH HOH . D 4 HOH A 47 647 4 HOH HOH . D 4 HOH A 48 648 102 HOH HOH . D 4 HOH A 49 649 19 HOH HOH . D 4 HOH A 50 650 130 HOH HOH . D 4 HOH A 51 651 115 HOH HOH . D 4 HOH A 52 652 9 HOH HOH . D 4 HOH A 53 653 49 HOH HOH . D 4 HOH A 54 654 50 HOH HOH . D 4 HOH A 55 655 93 HOH HOH . D 4 HOH A 56 656 117 HOH HOH . D 4 HOH A 57 657 33 HOH HOH . D 4 HOH A 58 658 105 HOH HOH . D 4 HOH A 59 659 72 HOH HOH . D 4 HOH A 60 660 124 HOH HOH . D 4 HOH A 61 661 129 HOH HOH . D 4 HOH A 62 662 149 HOH HOH . D 4 HOH A 63 663 103 HOH HOH . D 4 HOH A 64 664 41 HOH HOH . D 4 HOH A 65 665 100 HOH HOH . D 4 HOH A 66 666 56 HOH HOH . D 4 HOH A 67 667 118 HOH HOH . D 4 HOH A 68 668 11 HOH HOH . D 4 HOH A 69 669 173 HOH HOH . D 4 HOH A 70 670 58 HOH HOH . D 4 HOH A 71 671 6 HOH HOH . D 4 HOH A 72 672 26 HOH HOH . D 4 HOH A 73 673 140 HOH HOH . D 4 HOH A 74 674 169 HOH HOH . D 4 HOH A 75 675 80 HOH HOH . D 4 HOH A 76 676 29 HOH HOH . D 4 HOH A 77 677 16 HOH HOH . D 4 HOH A 78 678 98 HOH HOH . D 4 HOH A 79 679 133 HOH HOH . D 4 HOH A 80 680 47 HOH HOH . D 4 HOH A 81 681 62 HOH HOH . D 4 HOH A 82 682 189 HOH HOH . D 4 HOH A 83 683 119 HOH HOH . D 4 HOH A 84 684 23 HOH HOH . D 4 HOH A 85 685 127 HOH HOH . D 4 HOH A 86 686 111 HOH HOH . D 4 HOH A 87 687 30 HOH HOH . D 4 HOH A 88 688 159 HOH HOH . D 4 HOH A 89 689 114 HOH HOH . D 4 HOH A 90 690 37 HOH HOH . D 4 HOH A 91 691 104 HOH HOH . D 4 HOH A 92 692 176 HOH HOH . D 4 HOH A 93 693 157 HOH HOH . D 4 HOH A 94 694 116 HOH HOH . D 4 HOH A 95 695 57 HOH HOH . D 4 HOH A 96 696 71 HOH HOH . D 4 HOH A 97 697 34 HOH HOH . D 4 HOH A 98 698 190 HOH HOH . D 4 HOH A 99 699 18 HOH HOH . D 4 HOH A 100 700 32 HOH HOH . D 4 HOH A 101 701 213 HOH HOH . D 4 HOH A 102 702 141 HOH HOH . D 4 HOH A 103 703 160 HOH HOH . D 4 HOH A 104 704 31 HOH HOH . D 4 HOH A 105 705 90 HOH HOH . D 4 HOH A 106 706 99 HOH HOH . D 4 HOH A 107 707 94 HOH HOH . D 4 HOH A 108 708 170 HOH HOH . D 4 HOH A 109 709 154 HOH HOH . D 4 HOH A 110 710 70 HOH HOH . D 4 HOH A 111 711 112 HOH HOH . D 4 HOH A 112 712 45 HOH HOH . D 4 HOH A 113 713 42 HOH HOH . D 4 HOH A 114 714 150 HOH HOH . D 4 HOH A 115 715 161 HOH HOH . D 4 HOH A 116 716 79 HOH HOH . D 4 HOH A 117 717 65 HOH HOH . D 4 HOH A 118 718 134 HOH HOH . D 4 HOH A 119 719 185 HOH HOH . D 4 HOH A 120 720 12 HOH HOH . D 4 HOH A 121 721 74 HOH HOH . D 4 HOH A 122 722 143 HOH HOH . D 4 HOH A 123 723 120 HOH HOH . D 4 HOH A 124 724 51 HOH HOH . D 4 HOH A 125 725 139 HOH HOH . D 4 HOH A 126 726 69 HOH HOH . D 4 HOH A 127 727 207 HOH HOH . D 4 HOH A 128 728 180 HOH HOH . D 4 HOH A 129 729 121 HOH HOH . D 4 HOH A 130 730 91 HOH HOH . D 4 HOH A 131 731 142 HOH HOH . D 4 HOH A 132 732 163 HOH HOH . D 4 HOH A 133 733 40 HOH HOH . D 4 HOH A 134 734 59 HOH HOH . D 4 HOH A 135 735 148 HOH HOH . D 4 HOH A 136 736 88 HOH HOH . D 4 HOH A 137 737 122 HOH HOH . D 4 HOH A 138 738 181 HOH HOH . D 4 HOH A 139 739 191 HOH HOH . D 4 HOH A 140 740 212 HOH HOH . D 4 HOH A 141 741 203 HOH HOH . D 4 HOH A 142 742 76 HOH HOH . D 4 HOH A 143 743 35 HOH HOH . D 4 HOH A 144 744 92 HOH HOH . D 4 HOH A 145 745 108 HOH HOH . D 4 HOH A 146 746 167 HOH HOH . D 4 HOH A 147 747 89 HOH HOH . D 4 HOH A 148 748 78 HOH HOH . D 4 HOH A 149 749 208 HOH HOH . D 4 HOH A 150 750 67 HOH HOH . D 4 HOH A 151 751 153 HOH HOH . D 4 HOH A 152 752 214 HOH HOH . D 4 HOH A 153 753 113 HOH HOH . D 4 HOH A 154 754 194 HOH HOH . D 4 HOH A 155 755 193 HOH HOH . D 4 HOH A 156 756 179 HOH HOH . D 4 HOH A 157 757 178 HOH HOH . D 4 HOH A 158 758 177 HOH HOH . D 4 HOH A 159 759 1 HOH HOH . D 4 HOH A 160 760 61 HOH HOH . D 4 HOH A 161 761 188 HOH HOH . D 4 HOH A 162 762 53 HOH HOH . D 4 HOH A 163 763 87 HOH HOH . D 4 HOH A 164 764 85 HOH HOH . D 4 HOH A 165 765 147 HOH HOH . D 4 HOH A 166 766 126 HOH HOH . D 4 HOH A 167 767 138 HOH HOH . D 4 HOH A 168 768 168 HOH HOH . D 4 HOH A 169 769 132 HOH HOH . D 4 HOH A 170 770 123 HOH HOH . D 4 HOH A 171 771 128 HOH HOH . D 4 HOH A 172 772 81 HOH HOH . D 4 HOH A 173 773 198 HOH HOH . D 4 HOH A 174 774 204 HOH HOH . D 4 HOH A 175 775 38 HOH HOH . D 4 HOH A 176 776 187 HOH HOH . D 4 HOH A 177 777 137 HOH HOH . D 4 HOH A 178 778 101 HOH HOH . D 4 HOH A 179 779 184 HOH HOH . D 4 HOH A 180 780 199 HOH HOH . D 4 HOH A 181 781 210 HOH HOH . D 4 HOH A 182 782 201 HOH HOH . D 4 HOH A 183 783 197 HOH HOH . D 4 HOH A 184 784 131 HOH HOH . D 4 HOH A 185 785 152 HOH HOH . D 4 HOH A 186 786 63 HOH HOH . D 4 HOH A 187 787 215 HOH HOH . D 4 HOH A 188 788 175 HOH HOH . D 4 HOH A 189 789 145 HOH HOH . D 4 HOH A 190 790 202 HOH HOH . D 4 HOH A 191 791 155 HOH HOH . D 4 HOH A 192 792 205 HOH HOH . D 4 HOH A 193 793 200 HOH HOH . D 4 HOH A 194 794 165 HOH HOH . D 4 HOH A 195 795 86 HOH HOH . D 4 HOH A 196 796 22 HOH HOH . D 4 HOH A 197 797 162 HOH HOH . D 4 HOH A 198 798 211 HOH HOH . D 4 HOH A 199 799 209 HOH HOH . D 4 HOH A 200 800 166 HOH HOH . D 4 HOH A 201 801 216 HOH HOH . D 4 HOH A 202 802 182 HOH HOH . D 4 HOH A 203 803 46 HOH HOH . D 4 HOH A 204 804 174 HOH HOH . D 4 HOH A 205 805 84 HOH HOH . D 4 HOH A 206 806 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 33.824 _atom_site.Cartn_y 72.583 _atom_site.Cartn_z 5.042 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #