data_6RKO
#
_model_server_result.job_id            Gc_ZguCJt-bzbXOO_VUkPg 
_model_server_result.datetime_utc      '2024-11-21 13:39:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rko 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":403}' 
#
_entry.id    6RKO 
#
_exptl.entry_id    6RKO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RKO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RKO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
? 6 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 19 A HIS 19 1_555 J FE HDD . A HDD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc2 B NE2 HIS 186 A HIS 186 1_555 L FE HEB . A HEB 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc3 B OE1 GLU 445 A GLU 445 1_555 K FE HEB . A HEB 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                POV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     POPC 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C12 POV sing 429 n n 
N C13 POV sing 430 n n 
N C14 POV sing 431 n n 
N C15 POV sing 432 n n 
P O11 POV sing 433 n n 
P O12 POV sing 434 n n 
P O13 POV sing 435 n n 
P O14 POV doub 436 n n 
C1 C2 POV sing 437 n n 
C1 O11 POV sing 438 n n 
C1 H1 POV sing 439 n n 
C1 H1A POV sing 440 n n 
C2 C3 POV sing 441 n n 
C2 O21 POV sing 442 n n 
C2 H2 POV sing 443 n n 
C3 O31 POV sing 444 n n 
C3 H3 POV sing 445 n n 
C3 H3A POV sing 446 n n 
C210 C211 POV sing 447 n n 
C210 C29 POV doub 448 z n 
C210 H210 POV sing 449 n n 
C310 C311 POV sing 450 n n 
C310 C39 POV sing 451 n n 
C310 H310 POV sing 452 n n 
C310 H31A POV sing 453 n n 
C11 C12 POV sing 454 n n 
C11 O12 POV sing 455 n n 
C11 H11 POV sing 456 n n 
C11 H11A POV sing 457 n n 
C211 C212 POV sing 458 n n 
C211 H211 POV sing 459 n n 
C211 H21A POV sing 460 n n 
C311 C312 POV sing 461 n n 
C311 H311 POV sing 462 n n 
C311 H31B POV sing 463 n n 
C12 H12 POV sing 464 n n 
C12 H12A POV sing 465 n n 
C212 C213 POV sing 466 n n 
C212 H212 POV sing 467 n n 
C212 H21B POV sing 468 n n 
C312 C313 POV sing 469 n n 
C312 H312 POV sing 470 n n 
C312 H31C POV sing 471 n n 
C13 H13 POV sing 472 n n 
C13 H13A POV sing 473 n n 
C13 H13B POV sing 474 n n 
C213 C214 POV sing 475 n n 
C213 H213 POV sing 476 n n 
C213 H21C POV sing 477 n n 
C313 C314 POV sing 478 n n 
C313 H313 POV sing 479 n n 
C313 H31D POV sing 480 n n 
C14 H14 POV sing 481 n n 
C14 H14A POV sing 482 n n 
C14 H14B POV sing 483 n n 
C214 C215 POV sing 484 n n 
C214 H214 POV sing 485 n n 
C214 H21D POV sing 486 n n 
C314 C315 POV sing 487 n n 
C314 H314 POV sing 488 n n 
C314 H31E POV sing 489 n n 
C15 H15 POV sing 490 n n 
C15 H15A POV sing 491 n n 
C15 H15B POV sing 492 n n 
C215 C216 POV sing 493 n n 
C215 H215 POV sing 494 n n 
C215 H21E POV sing 495 n n 
C315 C316 POV sing 496 n n 
C315 H315 POV sing 497 n n 
C315 H31F POV sing 498 n n 
C216 C217 POV sing 499 n n 
C216 H216 POV sing 500 n n 
C216 H21F POV sing 501 n n 
C316 H316 POV sing 502 n n 
C316 H31G POV sing 503 n n 
C316 H31H POV sing 504 n n 
C217 C218 POV sing 505 n n 
C217 H217 POV sing 506 n n 
C217 H21G POV sing 507 n n 
C218 H218 POV sing 508 n n 
C218 H21H POV sing 509 n n 
C218 H21J POV sing 510 n n 
C21 O21 POV sing 511 n n 
C21 C22 POV sing 512 n n 
C21 O22 POV doub 513 n n 
C22 C23 POV sing 514 n n 
C22 H22 POV sing 515 n n 
C22 H22A POV sing 516 n n 
C23 C24 POV sing 517 n n 
C23 H23 POV sing 518 n n 
C23 H23A POV sing 519 n n 
C24 C25 POV sing 520 n n 
C24 H24 POV sing 521 n n 
C24 H24A POV sing 522 n n 
C25 C26 POV sing 523 n n 
C25 H25 POV sing 524 n n 
C25 H25A POV sing 525 n n 
C26 C27 POV sing 526 n n 
C26 H26 POV sing 527 n n 
C26 H26A POV sing 528 n n 
C27 C28 POV sing 529 n n 
C27 H27 POV sing 530 n n 
C27 H27A POV sing 531 n n 
C28 C29 POV sing 532 n n 
C28 H28 POV sing 533 n n 
C28 H28A POV sing 534 n n 
C29 H29 POV sing 535 n n 
C31 O31 POV sing 536 n n 
C31 C32 POV sing 537 n n 
C31 O32 POV doub 538 n n 
C32 C33 POV sing 539 n n 
C32 H32 POV sing 540 n n 
C32 H32A POV sing 541 n n 
C33 C34 POV sing 542 n n 
C33 H33 POV sing 543 n n 
C33 H33A POV sing 544 n n 
C34 C35 POV sing 545 n n 
C34 H34 POV sing 546 n n 
C34 H34A POV sing 547 n n 
C35 C36 POV sing 548 n n 
C35 H35 POV sing 549 n n 
C35 H35A POV sing 550 n n 
C36 C37 POV sing 551 n n 
C36 H36 POV sing 552 n n 
C36 H36A POV sing 553 n n 
C37 C38 POV sing 554 n n 
C37 H37 POV sing 555 n n 
C37 H37A POV sing 556 n n 
C38 C39 POV sing 557 n n 
C38 H38 POV sing 558 n n 
C38 H38A POV sing 559 n n 
C39 H39 POV sing 560 n n 
C39 H39A POV sing 561 n n 
#
_atom_sites.entry_id                     6RKO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 UQ8 B 1 401 1 UQ8 UQ8 . 
F 6 POV B 1 402 401 POV POV . 
G 6 POV B 1 403 501 POV POV . 
H 6 POV A 1 601 601 POV POV . 
I 6 POV A 1 602 701 POV POV . 
J 7 HDD A 1 603 1 HDD HDD . 
K 8 HEB A 1 604 502 HEB HEB . 
L 8 HEB A 1 605 501 HEB HEB . 
M 9 OXY A 1 606 1 OXY OXY . 
N 10 HOH B 1 501 51 HOH HOH . 
N 10 HOH B 2 502 83 HOH HOH . 
N 10 HOH B 3 503 71 HOH HOH . 
N 10 HOH B 4 504 85 HOH HOH . 
N 10 HOH B 5 505 66 HOH HOH . 
N 10 HOH B 6 506 90 HOH HOH . 
N 10 HOH B 7 507 70 HOH HOH . 
N 10 HOH B 8 508 50 HOH HOH . 
N 10 HOH B 9 509 59 HOH HOH . 
N 10 HOH B 10 510 82 HOH HOH . 
N 10 HOH B 11 511 67 HOH HOH . 
N 10 HOH B 12 512 88 HOH HOH . 
N 10 HOH B 13 513 80 HOH HOH . 
O 10 HOH A 1 701 91 HOH HOH . 
O 10 HOH A 2 702 74 HOH HOH . 
O 10 HOH A 3 703 89 HOH HOH . 
O 10 HOH A 4 704 62 HOH HOH . 
O 10 HOH A 5 705 73 HOH HOH . 
O 10 HOH A 6 706 38 HOH HOH . 
O 10 HOH A 7 707 72 HOH HOH . 
O 10 HOH A 8 708 68 HOH HOH . 
O 10 HOH A 9 709 33 HOH HOH . 
O 10 HOH A 10 710 44 HOH HOH . 
O 10 HOH A 11 711 31 HOH HOH . 
O 10 HOH A 12 712 65 HOH HOH . 
O 10 HOH A 13 713 11 HOH HOH . 
O 10 HOH A 14 714 35 HOH HOH . 
O 10 HOH A 15 715 76 HOH HOH . 
O 10 HOH A 16 716 45 HOH HOH . 
O 10 HOH A 17 717 77 HOH HOH . 
O 10 HOH A 18 718 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P POV . . . G 6 98.906 131.21 136.228 1 19.64 ? P POV 403 B 1 
HETATM 2 C C1 POV . . . G 6 99.21 129.373 134.339 1 19.64 ? C1 POV 403 B 1 
HETATM 3 C C2 POV . . . G 6 99.224 129.218 132.819 1 19.64 ? C2 POV 403 B 1 
HETATM 4 C C3 POV . . . G 6 99.335 130.596 132.177 1 19.64 ? C3 POV 403 B 1 
HETATM 5 C C210 POV . . . G 6 101.828 119.832 126.464 1 19.64 ? C210 POV 403 B 1 
HETATM 6 C C310 POV . . . G 6 102.002 124.632 122.953 1 19.64 ? C310 POV 403 B 1 
HETATM 7 O O11 POV . . . G 6 98.656 130.624 134.675 1 19.64 ? O11 POV 403 B 1 
HETATM 8 C C211 POV . . . G 6 100.75 118.76 126.39 1 19.64 ? C211 POV 403 B 1 
HETATM 9 C C311 POV . . . G 6 103.496 124.95 122.775 1 19.64 ? C311 POV 403 B 1 
HETATM 10 O O12 POV . . . G 6 97.506 131.852 136.799 1 19.64 ? O12 POV 403 B 1 
HETATM 11 C C312 POV . . . G 6 104.273 123.664 122.512 1 19.64 ? C312 POV 403 B 1 
HETATM 12 O O13 POV . . . G 6 99.361 130.081 137.122 1 19.64 ? O13 POV 403 B 1 
HETATM 13 C C313 POV . . . G 6 104.697 123.027 123.849 1 19.64 ? C313 POV 403 B 1 
HETATM 14 O O14 POV . . . G 6 99.969 132.282 136.199 1 19.64 ? O14 POV 403 B 1 
HETATM 15 C C314 POV . . . G 6 103.971 121.691 124.049 1 19.64 ? C314 POV 403 B 1 
HETATM 16 C C315 POV . . . G 6 104.091 120.823 122.774 1 19.64 ? C315 POV 403 B 1 
HETATM 17 C C21 POV . . . G 6 98.094 127.178 132.348 1 19.64 ? C21 POV 403 B 1 
HETATM 18 O O21 POV . . . G 6 98.044 128.59 132.389 1 19.64 ? O21 POV 403 B 1 
HETATM 19 C C22 POV . . . G 6 97.9 126.444 131.002 1 19.64 ? C22 POV 403 B 1 
HETATM 20 O O22 POV . . . G 6 98.272 126.548 133.339 1 19.64 ? O22 POV 403 B 1 
HETATM 21 C C23 POV . . . G 6 97.52 124.975 131.277 1 19.64 ? C23 POV 403 B 1 
HETATM 22 C C24 POV . . . G 6 97.223 124.262 129.934 1 19.64 ? C24 POV 403 B 1 
HETATM 23 C C25 POV . . . G 6 98.465 124.324 129.022 1 19.64 ? C25 POV 403 B 1 
HETATM 24 C C26 POV . . . G 6 99.007 122.902 128.824 1 19.64 ? C26 POV 403 B 1 
HETATM 25 C C27 POV . . . G 6 99.986 122.885 127.639 1 19.64 ? C27 POV 403 B 1 
HETATM 26 C C28 POV . . . G 6 100.039 121.467 127.048 1 19.64 ? C28 POV 403 B 1 
HETATM 27 C C29 POV . . . G 6 101.506 121.088 126.768 1 19.64 ? C29 POV 403 B 1 
HETATM 28 C C31 POV . . . G 6 98.676 131.319 130.031 1 19.64 ? C31 POV 403 B 1 
HETATM 29 O O31 POV . . . G 6 98.285 130.795 131.274 1 19.64 ? O31 POV 403 B 1 
HETATM 30 C C32 POV . . . G 6 97.915 130.921 128.763 1 19.64 ? C32 POV 403 B 1 
HETATM 31 O O32 POV . . . G 6 99.592 132.074 129.96 1 19.64 ? O32 POV 403 B 1 
HETATM 32 C C33 POV . . . G 6 98.176 129.434 128.448 1 19.64 ? C33 POV 403 B 1 
HETATM 33 C C34 POV . . . G 6 98.259 129.221 126.92 1 19.64 ? C34 POV 403 B 1 
HETATM 34 C C35 POV . . . G 6 99.287 128.096 126.639 1 19.64 ? C35 POV 403 B 1 
HETATM 35 C C36 POV . . . G 6 99.061 127.476 125.238 1 19.64 ? C36 POV 403 B 1 
HETATM 36 C C37 POV . . . G 6 99.491 125.996 125.29 1 19.64 ? C37 POV 403 B 1 
HETATM 37 C C38 POV . . . G 6 99.839 125.494 123.877 1 19.64 ? C38 POV 403 B 1 
HETATM 38 C C39 POV . . . G 6 101.303 125.845 123.565 1 19.64 ? C39 POV 403 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#