data_6RKO
#
_model_server_result.job_id            uGZ-6oPZkVrHTbJwMjC_sA 
_model_server_result.datetime_utc      '2024-11-21 14:10:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rko 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":603}' 
#
_entry.id    6RKO 
#
_exptl.entry_id    6RKO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              632.487 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RKO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RKO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 19 A HIS 19 1_555 J FE HDD . A HDD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc2 B NE2 HIS 186 A HIS 186 1_555 L FE HEB . A HEB 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc3 B OE1 GLU 445 A GLU 445 1_555 K FE HEB . A HEB 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O5' 
_chem_comp.formula_weight    632.487 
_chem_comp.id                HDD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HDD sing 129 n n 
FE NB HDD sing 130 n n 
FE NC HDD sing 131 n n 
FE ND HDD sing 132 n n 
CHA C1A HDD sing 133 n n 
CHA C4D HDD doub 134 n n 
CHA HHA HDD sing 135 n n 
CHB C4A HDD sing 136 n n 
CHB C1B HDD doub 137 n n 
CHB HHB HDD sing 138 n n 
CHC C4B HDD doub 139 n n 
CHC C1C HDD sing 140 n n 
CHC HHC HDD sing 141 n n 
CHD C4C HDD sing 142 n n 
CHD C1D HDD doub 143 n n 
CHD HHD HDD sing 144 n n 
NA C1A HDD sing 145 n y 
NA C4A HDD sing 146 n y 
C1A C2A HDD doub 147 n y 
C2A C3A HDD sing 148 n y 
C2A CAA HDD sing 149 n n 
C3A C4A HDD doub 150 n y 
C3A CMA HDD sing 151 n n 
CMA HMA1 HDD sing 152 n n 
CMA HMA2 HDD sing 153 n n 
CMA HMA3 HDD sing 154 n n 
CAA CBA HDD sing 155 n n 
CAA HAA1 HDD sing 156 n n 
CAA HAA2 HDD sing 157 n n 
CBA CGA HDD sing 158 n n 
CBA HBA1 HDD sing 159 n n 
CBA HBA2 HDD sing 160 n n 
CGA O1A HDD doub 161 n n 
CGA O2A HDD sing 162 n n 
O2A H2A HDD sing 163 n n 
NB C1B HDD sing 164 n y 
NB C4B HDD sing 165 n y 
C1B C2B HDD sing 166 n y 
C2B C3B HDD doub 167 n y 
C2B CMB HDD sing 168 n n 
C3B C4B HDD sing 169 n y 
C3B CAB HDD sing 170 n n 
CMB HMB1 HDD sing 171 n n 
CMB HMB2 HDD sing 172 n n 
CMB HMB3 HDD sing 173 n n 
CAB CBB HDD doub 174 n n 
CAB HAB HDD sing 175 n n 
CBB HBB1 HDD sing 176 n n 
CBB HBB2 HDD sing 177 n n 
NC C1C HDD sing 178 n y 
NC C4C HDD sing 179 n y 
C1C C2C HDD doub 180 n y 
C2C C3C HDD sing 181 n y 
C2C CMC HDD sing 182 n n 
C3C C4C HDD doub 183 n y 
C3C CAC HDD sing 184 n n 
CMC HMC1 HDD sing 185 n n 
CMC HMC2 HDD sing 186 n n 
CMC HMC3 HDD sing 187 n n 
CAC CBC HDD doub 188 n n 
CAC HAC HDD sing 189 n n 
CBC HBC1 HDD sing 190 n n 
CBC HBC2 HDD sing 191 n n 
ND C1D HDD sing 192 n n 
ND C4D HDD sing 193 n n 
C1D C2D HDD sing 194 n n 
C2D C3D HDD sing 195 n n 
C2D CMD HDD sing 196 n n 
C2D OND HDD sing 197 n n 
C3D C4D HDD sing 198 n n 
C3D CAD HDD sing 199 n n 
C3D O1D HDD sing 200 n n 
CMD HMD1 HDD sing 201 n n 
CMD HMD2 HDD sing 202 n n 
CMD HMD3 HDD sing 203 n n 
CAD CBD HDD sing 204 n n 
CAD HAD1 HDD sing 205 n n 
CAD HAD2 HDD sing 206 n n 
CBD CGD HDD sing 207 n n 
CBD HBD1 HDD sing 208 n n 
CBD HBD2 HDD sing 209 n n 
CGD O1D HDD sing 210 n n 
CGD O2D HDD doub 211 n n 
OND HND HDD sing 212 n n 
#
_atom_sites.entry_id                     6RKO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 UQ8 B 1 401 1 UQ8 UQ8 . 
F 6 POV B 1 402 401 POV POV . 
G 6 POV B 1 403 501 POV POV . 
H 6 POV A 1 601 601 POV POV . 
I 6 POV A 1 602 701 POV POV . 
J 7 HDD A 1 603 1 HDD HDD . 
K 8 HEB A 1 604 502 HEB HEB . 
L 8 HEB A 1 605 501 HEB HEB . 
M 9 OXY A 1 606 1 OXY OXY . 
N 10 HOH B 1 501 51 HOH HOH . 
N 10 HOH B 2 502 83 HOH HOH . 
N 10 HOH B 3 503 71 HOH HOH . 
N 10 HOH B 4 504 85 HOH HOH . 
N 10 HOH B 5 505 66 HOH HOH . 
N 10 HOH B 6 506 90 HOH HOH . 
N 10 HOH B 7 507 70 HOH HOH . 
N 10 HOH B 8 508 50 HOH HOH . 
N 10 HOH B 9 509 59 HOH HOH . 
N 10 HOH B 10 510 82 HOH HOH . 
N 10 HOH B 11 511 67 HOH HOH . 
N 10 HOH B 12 512 88 HOH HOH . 
N 10 HOH B 13 513 80 HOH HOH . 
O 10 HOH A 1 701 91 HOH HOH . 
O 10 HOH A 2 702 74 HOH HOH . 
O 10 HOH A 3 703 89 HOH HOH . 
O 10 HOH A 4 704 62 HOH HOH . 
O 10 HOH A 5 705 73 HOH HOH . 
O 10 HOH A 6 706 38 HOH HOH . 
O 10 HOH A 7 707 72 HOH HOH . 
O 10 HOH A 8 708 68 HOH HOH . 
O 10 HOH A 9 709 33 HOH HOH . 
O 10 HOH A 10 710 44 HOH HOH . 
O 10 HOH A 11 711 31 HOH HOH . 
O 10 HOH A 12 712 65 HOH HOH . 
O 10 HOH A 13 713 11 HOH HOH . 
O 10 HOH A 14 714 35 HOH HOH . 
O 10 HOH A 15 715 76 HOH HOH . 
O 10 HOH A 16 716 45 HOH HOH . 
O 10 HOH A 17 717 77 HOH HOH . 
O 10 HOH A 18 718 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HDD . . . J 7 131.083 126.328 116.05 1 0.37 ? FE HDD 603 A 1 
HETATM 2 C CHA HDD . . . J 7 130.529 123.11 115.901 1 0.37 ? CHA HDD 603 A 1 
HETATM 3 C CHB HDD . . . J 7 129.31 126.597 118.998 1 0.37 ? CHB HDD 603 A 1 
HETATM 4 C CHC HDD . . . J 7 132.282 129.525 116.417 1 0.37 ? CHC HDD 603 A 1 
HETATM 5 C CHD HDD . . . J 7 131.328 126.525 112.793 1 0.37 ? CHD HDD 603 A 1 
HETATM 6 N NA HDD . . . J 7 130.063 125.041 117.296 1 0.37 ? NA HDD 603 A 1 
HETATM 7 C C1A HDD . . . J 7 129.939 123.745 117.077 1 0.37 ? C1A HDD 603 A 1 
HETATM 8 C C2A HDD . . . J 7 129.173 122.992 118.066 1 0.37 ? C2A HDD 603 A 1 
HETATM 9 C C3A HDD . . . J 7 128.795 124.032 119.008 1 0.37 ? C3A HDD 603 A 1 
HETATM 10 C C4A HDD . . . J 7 129.404 125.251 118.42 1 0.37 ? C4A HDD 603 A 1 
HETATM 11 C CMA HDD . . . J 7 127.99 123.853 120.252 1 0.37 ? CMA HDD 603 A 1 
HETATM 12 C CAA HDD . . . J 7 128.867 121.528 118.071 1 0.37 ? CAA HDD 603 A 1 
HETATM 13 C CBA HDD . . . J 7 127.451 121.34 117.555 1 0.37 ? CBA HDD 603 A 1 
HETATM 14 C CGA HDD . . . J 7 127.317 120.025 116.832 1 0.37 ? CGA HDD 603 A 1 
HETATM 15 O O1A HDD . . . J 7 127.262 118.963 117.474 1 0.37 ? O1A HDD 603 A 1 
HETATM 16 O O2A HDD . . . J 7 127.259 120.037 115.596 1 0.37 ? O2A HDD 603 A 1 
HETATM 17 N NB HDD . . . J 7 130.84 127.825 117.47 1 0.37 ? NB HDD 603 A 1 
HETATM 18 C C1B HDD . . . J 7 130.096 127.759 118.577 1 0.37 ? C1B HDD 603 A 1 
HETATM 19 C C2B HDD . . . J 7 130.11 128.961 119.396 1 0.37 ? C2B HDD 603 A 1 
HETATM 20 C C3B HDD . . . J 7 130.992 129.85 118.652 1 0.37 ? C3B HDD 603 A 1 
HETATM 21 C C4B HDD . . . J 7 131.395 129.053 117.484 1 0.37 ? C4B HDD 603 A 1 
HETATM 22 C CMB HDD . . . J 7 129.37 129.175 120.666 1 0.37 ? CMB HDD 603 A 1 
HETATM 23 C CAB HDD . . . J 7 131.337 131.22 119.086 1 0.37 ? CAB HDD 603 A 1 
HETATM 24 C CBB HDD . . . J 7 132.385 131.539 119.808 1 0.37 ? CBB HDD 603 A 1 
HETATM 25 N NC HDD . . . J 7 131.73 127.838 114.8 1 0.37 ? NC HDD 603 A 1 
HETATM 26 C C1C HDD . . . J 7 132.184 129.053 115.047 1 0.37 ? C1C HDD 603 A 1 
HETATM 27 C C2C HDD . . . J 7 132.549 129.865 113.865 1 0.37 ? C2C HDD 603 A 1 
HETATM 28 C C3C HDD . . . J 7 132.241 128.92 112.798 1 0.37 ? C3C HDD 603 A 1 
HETATM 29 C C4C HDD . . . J 7 131.751 127.739 113.492 1 0.37 ? C4C HDD 603 A 1 
HETATM 30 C CMC HDD . . . J 7 133.089 131.266 113.784 1 0.37 ? CMC HDD 603 A 1 
HETATM 31 C CAC HDD . . . J 7 132.341 129.005 111.321 1 0.37 ? CAC HDD 603 A 1 
HETATM 32 C CBC HDD . . . J 7 132.287 130.131 110.656 1 0.37 ? CBC HDD 603 A 1 
HETATM 33 N ND HDD . . . J 7 131.079 125.089 114.682 1 0.37 ? ND HDD 603 A 1 
HETATM 34 C C1D HDD . . . J 7 131.202 125.349 113.378 1 0.37 ? C1D HDD 603 A 1 
HETATM 35 C C2D HDD . . . J 7 130.864 124.161 112.557 1 0.37 ? C2D HDD 603 A 1 
HETATM 36 C C3D HDD . . . J 7 131.289 123.11 113.539 1 0.37 ? C3D HDD 603 A 1 
HETATM 37 C C4D HDD . . . J 7 130.951 123.776 114.826 1 0.37 ? C4D HDD 603 A 1 
HETATM 38 C CMD HDD . . . J 7 131.634 124.188 111.266 1 0.37 ? CMD HDD 603 A 1 
HETATM 39 C CAD HDD . . . J 7 132.755 122.716 113.482 1 0.37 ? CAD HDD 603 A 1 
HETATM 40 C CBD HDD . . . J 7 132.816 121.23 113.18 1 0.37 ? CBD HDD 603 A 1 
HETATM 41 C CGD HDD . . . J 7 131.441 120.834 113.605 1 0.37 ? CGD HDD 603 A 1 
HETATM 42 O O1D HDD . . . J 7 130.531 121.932 113.508 1 0.37 ? O1D HDD 603 A 1 
HETATM 43 O O2D HDD . . . J 7 131.114 119.739 114.004 1 0.37 ? O2D HDD 603 A 1 
HETATM 44 O OND HDD . . . J 7 129.496 124.164 112.205 1 0.37 ? OND HDD 603 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           651 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           44 
#