data_6RKO
#
_model_server_result.job_id            DkRZQ58XKw9Nt0VgNe50YQ 
_model_server_result.datetime_utc      '2024-11-23 09:47:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rko 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":605}' 
#
_entry.id    6RKO 
#
_exptl.entry_id    6RKO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME B/C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6RKO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RKO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 K N N 
? 8 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 19 A HIS 19 1_555 J FE HDD . A HDD 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc2 B NE2 HIS 186 A HIS 186 1_555 L FE HEB . A HEB 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc3 B OE1 GLU 445 A GLU 445 1_555 K FE HEB . A HEB 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME B/C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX CONTAINING FE)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEB sing 213 n n 
FE NB HEB sing 214 n n 
FE NC HEB sing 215 n n 
FE ND HEB sing 216 n n 
CHA C1A HEB doub 217 n n 
CHA C4D HEB sing 218 n n 
CHA HHA HEB sing 219 n n 
CHB C4A HEB doub 220 n n 
CHB C1B HEB sing 221 n n 
CHB HHB HEB sing 222 n n 
CHC C4B HEB doub 223 n n 
CHC C1C HEB sing 224 n n 
CHC HHC HEB sing 225 n n 
CHD C4C HEB sing 226 n n 
CHD C1D HEB doub 227 n n 
CHD HHD HEB sing 228 n n 
NA C1A HEB sing 229 n n 
NA C4A HEB sing 230 n n 
C1A C2A HEB sing 231 n n 
C2A C3A HEB doub 232 n n 
C2A CAA HEB sing 233 n n 
C3A C4A HEB sing 234 n n 
C3A CMA HEB sing 235 n n 
CMA HMA1 HEB sing 236 n n 
CMA HMA2 HEB sing 237 n n 
CMA HMA3 HEB sing 238 n n 
CAA CBA HEB sing 239 n n 
CAA HAA1 HEB sing 240 n n 
CAA HAA2 HEB sing 241 n n 
CBA CGA HEB sing 242 n n 
CBA HBA1 HEB sing 243 n n 
CBA HBA2 HEB sing 244 n n 
CGA O1A HEB doub 245 n n 
CGA O2A HEB sing 246 n n 
O2A H2A HEB sing 247 n n 
NB C1B HEB doub 248 n n 
NB C4B HEB sing 249 n n 
C1B C2B HEB sing 250 n n 
C2B C3B HEB doub 251 n n 
C2B CMB HEB sing 252 n n 
C3B C4B HEB sing 253 n n 
C3B CAB HEB sing 254 n n 
CMB HMB1 HEB sing 255 n n 
CMB HMB2 HEB sing 256 n n 
CMB HMB3 HEB sing 257 n n 
CAB CBB HEB sing 258 n n 
CAB HAB HEB sing 259 n n 
CAB HAB2 HEB sing 260 n n 
CBB HBB1 HEB sing 261 n n 
CBB HBB2 HEB sing 262 n n 
CBB HBB3 HEB sing 263 n n 
NC C1C HEB sing 264 n y 
NC C4C HEB sing 265 n y 
C1C C2C HEB doub 266 n y 
C2C C3C HEB sing 267 n y 
C2C CMC HEB sing 268 n n 
C3C C4C HEB doub 269 n y 
C3C CAC HEB sing 270 n n 
CMC HMC1 HEB sing 271 n n 
CMC HMC2 HEB sing 272 n n 
CMC HMC3 HEB sing 273 n n 
CAC CBC HEB doub 274 n n 
CAC HAC HEB sing 275 n n 
CBC HBC1 HEB sing 276 n n 
CBC HBC2 HEB sing 277 n n 
ND C1D HEB sing 278 n n 
ND C4D HEB doub 279 n n 
C1D C2D HEB sing 280 n n 
C2D C3D HEB doub 281 n n 
C2D CMD HEB sing 282 n n 
C3D C4D HEB sing 283 n n 
C3D CAD HEB sing 284 n n 
CMD HMD1 HEB sing 285 n n 
CMD HMD2 HEB sing 286 n n 
CMD HMD3 HEB sing 287 n n 
CAD CBD HEB sing 288 n n 
CAD HAD1 HEB sing 289 n n 
CAD HAD2 HEB sing 290 n n 
CBD CGD HEB sing 291 n n 
CBD HBD1 HEB sing 292 n n 
CBD HBD2 HEB sing 293 n n 
CGD O1D HEB doub 294 n n 
CGD O2D HEB sing 295 n n 
O2D H2D HEB sing 296 n n 
#
_atom_sites.entry_id                     6RKO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 UQ8 B 1 401 1 UQ8 UQ8 . 
F 6 POV B 1 402 401 POV POV . 
G 6 POV B 1 403 501 POV POV . 
H 6 POV A 1 601 601 POV POV . 
I 6 POV A 1 602 701 POV POV . 
J 7 HDD A 1 603 1 HDD HDD . 
K 8 HEB A 1 604 502 HEB HEB . 
L 8 HEB A 1 605 501 HEB HEB . 
M 9 OXY A 1 606 1 OXY OXY . 
N 10 HOH B 1 501 51 HOH HOH . 
N 10 HOH B 2 502 83 HOH HOH . 
N 10 HOH B 3 503 71 HOH HOH . 
N 10 HOH B 4 504 85 HOH HOH . 
N 10 HOH B 5 505 66 HOH HOH . 
N 10 HOH B 6 506 90 HOH HOH . 
N 10 HOH B 7 507 70 HOH HOH . 
N 10 HOH B 8 508 50 HOH HOH . 
N 10 HOH B 9 509 59 HOH HOH . 
N 10 HOH B 10 510 82 HOH HOH . 
N 10 HOH B 11 511 67 HOH HOH . 
N 10 HOH B 12 512 88 HOH HOH . 
N 10 HOH B 13 513 80 HOH HOH . 
O 10 HOH A 1 701 91 HOH HOH . 
O 10 HOH A 2 702 74 HOH HOH . 
O 10 HOH A 3 703 89 HOH HOH . 
O 10 HOH A 4 704 62 HOH HOH . 
O 10 HOH A 5 705 73 HOH HOH . 
O 10 HOH A 6 706 38 HOH HOH . 
O 10 HOH A 7 707 72 HOH HOH . 
O 10 HOH A 8 708 68 HOH HOH . 
O 10 HOH A 9 709 33 HOH HOH . 
O 10 HOH A 10 710 44 HOH HOH . 
O 10 HOH A 11 711 31 HOH HOH . 
O 10 HOH A 12 712 65 HOH HOH . 
O 10 HOH A 13 713 11 HOH HOH . 
O 10 HOH A 14 714 35 HOH HOH . 
O 10 HOH A 15 715 76 HOH HOH . 
O 10 HOH A 16 716 45 HOH HOH . 
O 10 HOH A 17 717 77 HOH HOH . 
O 10 HOH A 18 718 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEB . . . L 8 141.084 138.097 105.92 1 2.81 ? FE HEB 605 A 1 
HETATM 2 C CHA HEB . . . L 8 139.081 139.085 108.871 1 2.81 ? CHA HEB 605 A 1 
HETATM 3 C CHB HEB . . . L 8 141.262 141.512 104.779 1 2.81 ? CHB HEB 605 A 1 
HETATM 4 C CHC HEB . . . L 8 143.056 136.934 103.096 1 2.81 ? CHC HEB 605 A 1 
HETATM 5 C CHD HEB . . . L 8 140.923 134.477 107.06 1 2.81 ? CHD HEB 605 A 1 
HETATM 6 N NA HEB . . . L 8 140.306 139.904 106.698 1 2.81 ? NA HEB 605 A 1 
HETATM 7 C C1A HEB . . . L 8 139.541 140.075 107.907 1 2.81 ? C1A HEB 605 A 1 
HETATM 8 C C2A HEB . . . L 8 139.389 141.358 107.847 1 2.81 ? C2A HEB 605 A 1 
HETATM 9 C C3A HEB . . . L 8 139.851 142.029 106.915 1 2.81 ? C3A HEB 605 A 1 
HETATM 10 C C4A HEB . . . L 8 140.516 141.257 106.026 1 2.81 ? C4A HEB 605 A 1 
HETATM 11 C CMA HEB . . . L 8 139.711 143.554 106.759 1 2.81 ? CMA HEB 605 A 1 
HETATM 12 C CAA HEB . . . L 8 138.582 142.096 108.91 1 2.81 ? CAA HEB 605 A 1 
HETATM 13 C CBA HEB . . . L 8 138.206 141.435 110.205 1 2.81 ? CBA HEB 605 A 1 
HETATM 14 C CGA HEB . . . L 8 136.964 142.134 110.705 1 2.81 ? CGA HEB 605 A 1 
HETATM 15 O O1A HEB . . . L 8 136.741 142.315 111.932 1 2.81 ? O1A HEB 605 A 1 
HETATM 16 O O2A HEB . . . L 8 136.115 142.523 109.873 1 2.81 ? O2A HEB 605 A 1 
HETATM 17 N NB HEB . . . L 8 141.981 139.041 104.231 1 2.81 ? NB HEB 605 A 1 
HETATM 18 C C1B HEB . . . L 8 141.921 140.474 103.975 1 2.81 ? C1B HEB 605 A 1 
HETATM 19 C C2B HEB . . . L 8 142.603 140.494 102.894 1 2.81 ? C2B HEB 605 A 1 
HETATM 20 C C3B HEB . . . L 8 143.086 139.43 102.417 1 2.81 ? C3B HEB 605 A 1 
HETATM 21 C C4B HEB . . . L 8 142.773 138.356 103.192 1 2.81 ? C4B HEB 605 A 1 
HETATM 22 C CMB HEB . . . L 8 142.77 141.868 102.309 1 2.81 ? CMB HEB 605 A 1 
HETATM 23 C CAB HEB . . . L 8 143.911 139.216 101.159 1 2.81 ? CAB HEB 605 A 1 
HETATM 24 C CBB HEB . . . L 8 144.51 140.453 100.556 1 2.81 ? CBB HEB 605 A 1 
HETATM 25 N NC HEB . . . L 8 141.759 136.113 105.318 1 2.81 ? NC HEB 605 A 1 
HETATM 26 C C1C HEB . . . L 8 142.582 135.899 104.081 1 2.81 ? C1C HEB 605 A 1 
HETATM 27 C C2C HEB . . . L 8 142.769 134.706 104.1 1 2.81 ? C2C HEB 605 A 1 
HETATM 28 C C3C HEB . . . L 8 142.297 134.01 105.003 1 2.81 ? C3C HEB 605 A 1 
HETATM 29 C C4C HEB . . . L 8 141.582 134.811 105.927 1 2.81 ? C4C HEB 605 A 1 
HETATM 30 C CMC HEB . . . L 8 143.587 134.127 102.956 1 2.81 ? CMC HEB 605 A 1 
HETATM 31 C CAC HEB . . . L 8 142.407 132.509 105.2 1 2.81 ? CAC HEB 605 A 1 
HETATM 32 C CBC HEB . . . L 8 142.298 131.652 103.969 1 2.81 ? CBC HEB 605 A 1 
HETATM 33 N ND HEB . . . L 8 140.145 136.874 107.71 1 2.81 ? ND HEB 605 A 1 
HETATM 34 C C1D HEB . . . L 8 140.235 135.461 107.92 1 2.81 ? C1D HEB 605 A 1 
HETATM 35 C C2D HEB . . . L 8 139.529 135.378 109.034 1 2.81 ? C2D HEB 605 A 1 
HETATM 36 C C3D HEB . . . L 8 138.972 136.469 109.651 1 2.81 ? C3D HEB 605 A 1 
HETATM 37 C C4D HEB . . . L 8 139.359 137.587 108.787 1 2.81 ? C4D HEB 605 A 1 
HETATM 38 C CMD HEB . . . L 8 139.339 134.026 109.631 1 2.81 ? CMD HEB 605 A 1 
HETATM 39 C CAD HEB . . . L 8 138.128 136.547 110.917 1 2.81 ? CAD HEB 605 A 1 
HETATM 40 C CBD HEB . . . L 8 136.648 136.632 110.545 1 2.81 ? CBD HEB 605 A 1 
HETATM 41 C CGD HEB . . . L 8 136.226 137.919 109.807 1 2.81 ? CGD HEB 605 A 1 
HETATM 42 O O1D HEB . . . L 8 135.851 137.973 108.607 1 2.81 ? O1D HEB 605 A 1 
HETATM 43 O O2D HEB . . . L 8 136.229 138.988 110.422 1 2.81 ? O2D HEB 605 A 1 
#
_model_server_stats.io_time_ms              108 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#