data_6RKT
#
_model_server_result.job_id            x-5Zh6PKIuC9tVfRsnmPrw 
_model_server_result.datetime_utc      '2025-08-31 04:09:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rkt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    6RKT 
#
_exptl.entry_id    6RKT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              216.242 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}2-methyl-7,8-dihydro-3~{H}-imidazo[4,5-g]quinazoline-2,6-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.34 
_cell.angle_gamma         90 
_cell.entry_id            6RKT 
_cell.length_a            89.629 
_cell.length_b            64.588 
_cell.length_c            71.176 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RKT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -8.293568 0 142.110199 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 309 A CYS 318 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc2 A SG CYS 311 A CYS 320 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc3 A SG CYS 314 A CYS 323 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc4 A ND1 HIS 340 A HIS 349 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
#
_chem_comp.formula           'C10 H12 N6' 
_chem_comp.formula_weight    216.242 
_chem_comp.id                K7H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}2-methyl-7,8-dihydro-3~{H}-imidazo[4,5-g]quinazoline-2,6-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C N K7H sing 195 n n 
N C1 K7H sing 196 n n 
C1 N1 K7H sing 197 n y 
C1 N2 K7H doub 198 n y 
N1 C2 K7H sing 199 n y 
N2 C3 K7H sing 200 n y 
C2 C3 K7H doub 201 n y 
C2 C9 K7H sing 202 n y 
C3 C4 K7H sing 203 n y 
C9 C8 K7H doub 204 n y 
C4 C5 K7H doub 205 n y 
C8 C5 K7H sing 206 n y 
C8 N5 K7H sing 207 n n 
C5 C6 K7H sing 208 n n 
N5 C7 K7H doub 209 n n 
C6 N3 K7H sing 210 n n 
C7 N3 K7H sing 211 n n 
C7 N4 K7H sing 212 n n 
N3 H1 K7H sing 213 n n 
C4 H2 K7H sing 214 n n 
N4 H3 K7H sing 215 n n 
N4 H4 K7H sing 216 n n 
C6 H5 K7H sing 217 n n 
C6 H6 K7H sing 218 n n 
C9 H7 K7H sing 219 n n 
N1 H8 K7H sing 220 n n 
N H10 K7H sing 221 n n 
C H11 K7H sing 222 n n 
C H12 K7H sing 223 n n 
C H13 K7H sing 224 n n 
#
_atom_sites.entry_id                     6RKT 
_atom_sites.fract_transf_matrix[1][1]    0.011157 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000652 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015483 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014074 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 401 1 GOL GOL . 
C 3 DMS A 1 402 1 DMS DMS . 
D 4 ZN A 1 403 1 ZN ZN . 
E 5 K7H A 1 404 1 K7H 342 . 
F 6 HOH A 1 501 49 HOH HOH . 
F 6 HOH A 2 502 192 HOH HOH . 
F 6 HOH A 3 503 176 HOH HOH . 
F 6 HOH A 4 504 193 HOH HOH . 
F 6 HOH A 5 505 35 HOH HOH . 
F 6 HOH A 6 506 137 HOH HOH . 
F 6 HOH A 7 507 13 HOH HOH . 
F 6 HOH A 8 508 121 HOH HOH . 
F 6 HOH A 9 509 139 HOH HOH . 
F 6 HOH A 10 510 65 HOH HOH . 
F 6 HOH A 11 511 195 HOH HOH . 
F 6 HOH A 12 512 80 HOH HOH . 
F 6 HOH A 13 513 42 HOH HOH . 
F 6 HOH A 14 514 175 HOH HOH . 
F 6 HOH A 15 515 190 HOH HOH . 
F 6 HOH A 16 516 155 HOH HOH . 
F 6 HOH A 17 517 82 HOH HOH . 
F 6 HOH A 18 518 47 HOH HOH . 
F 6 HOH A 19 519 84 HOH HOH . 
F 6 HOH A 20 520 48 HOH HOH . 
F 6 HOH A 21 521 73 HOH HOH . 
F 6 HOH A 22 522 18 HOH HOH . 
F 6 HOH A 23 523 46 HOH HOH . 
F 6 HOH A 24 524 157 HOH HOH . 
F 6 HOH A 25 525 135 HOH HOH . 
F 6 HOH A 26 526 39 HOH HOH . 
F 6 HOH A 27 527 130 HOH HOH . 
F 6 HOH A 28 528 38 HOH HOH . 
F 6 HOH A 29 529 125 HOH HOH . 
F 6 HOH A 30 530 44 HOH HOH . 
F 6 HOH A 31 531 99 HOH HOH . 
F 6 HOH A 32 532 32 HOH HOH . 
F 6 HOH A 33 533 12 HOH HOH . 
F 6 HOH A 34 534 168 HOH HOH . 
F 6 HOH A 35 535 113 HOH HOH . 
F 6 HOH A 36 536 31 HOH HOH . 
F 6 HOH A 37 537 23 HOH HOH . 
F 6 HOH A 38 538 22 HOH HOH . 
F 6 HOH A 39 539 185 HOH HOH . 
F 6 HOH A 40 540 88 HOH HOH . 
F 6 HOH A 41 541 189 HOH HOH . 
F 6 HOH A 42 542 123 HOH HOH . 
F 6 HOH A 43 543 3 HOH HOH . 
F 6 HOH A 44 544 150 HOH HOH . 
F 6 HOH A 45 545 83 HOH HOH . 
F 6 HOH A 46 546 4 HOH HOH . 
F 6 HOH A 47 547 158 HOH HOH . 
F 6 HOH A 48 548 165 HOH HOH . 
F 6 HOH A 49 549 78 HOH HOH . 
F 6 HOH A 50 550 191 HOH HOH . 
F 6 HOH A 51 551 66 HOH HOH . 
F 6 HOH A 52 552 90 HOH HOH . 
F 6 HOH A 53 553 182 HOH HOH . 
F 6 HOH A 54 554 89 HOH HOH . 
F 6 HOH A 55 555 10 HOH HOH . 
F 6 HOH A 56 556 108 HOH HOH . 
F 6 HOH A 57 557 76 HOH HOH . 
F 6 HOH A 58 558 21 HOH HOH . 
F 6 HOH A 59 559 67 HOH HOH . 
F 6 HOH A 60 560 149 HOH HOH . 
F 6 HOH A 61 561 16 HOH HOH . 
F 6 HOH A 62 562 98 HOH HOH . 
F 6 HOH A 63 563 7 HOH HOH . 
F 6 HOH A 64 564 173 HOH HOH . 
F 6 HOH A 65 565 25 HOH HOH . 
F 6 HOH A 66 566 33 HOH HOH . 
F 6 HOH A 67 567 145 HOH HOH . 
F 6 HOH A 68 568 114 HOH HOH . 
F 6 HOH A 69 569 24 HOH HOH . 
F 6 HOH A 70 570 37 HOH HOH . 
F 6 HOH A 71 571 70 HOH HOH . 
F 6 HOH A 72 572 81 HOH HOH . 
F 6 HOH A 73 573 115 HOH HOH . 
F 6 HOH A 74 574 28 HOH HOH . 
F 6 HOH A 75 575 40 HOH HOH . 
F 6 HOH A 76 576 101 HOH HOH . 
F 6 HOH A 77 577 58 HOH HOH . 
F 6 HOH A 78 578 29 HOH HOH . 
F 6 HOH A 79 579 19 HOH HOH . 
F 6 HOH A 80 580 2 HOH HOH . 
F 6 HOH A 81 581 27 HOH HOH . 
F 6 HOH A 82 582 9 HOH HOH . 
F 6 HOH A 83 583 14 HOH HOH . 
F 6 HOH A 84 584 34 HOH HOH . 
F 6 HOH A 85 585 87 HOH HOH . 
F 6 HOH A 86 586 124 HOH HOH . 
F 6 HOH A 87 587 26 HOH HOH . 
F 6 HOH A 88 588 179 HOH HOH . 
F 6 HOH A 89 589 151 HOH HOH . 
F 6 HOH A 90 590 199 HOH HOH . 
F 6 HOH A 91 591 60 HOH HOH . 
F 6 HOH A 92 592 122 HOH HOH . 
F 6 HOH A 93 593 131 HOH HOH . 
F 6 HOH A 94 594 11 HOH HOH . 
F 6 HOH A 95 595 85 HOH HOH . 
F 6 HOH A 96 596 68 HOH HOH . 
F 6 HOH A 97 597 132 HOH HOH . 
F 6 HOH A 98 598 45 HOH HOH . 
F 6 HOH A 99 599 63 HOH HOH . 
F 6 HOH A 100 600 183 HOH HOH . 
F 6 HOH A 101 601 17 HOH HOH . 
F 6 HOH A 102 602 20 HOH HOH . 
F 6 HOH A 103 603 54 HOH HOH . 
F 6 HOH A 104 604 79 HOH HOH . 
F 6 HOH A 105 605 126 HOH HOH . 
F 6 HOH A 106 606 142 HOH HOH . 
F 6 HOH A 107 607 144 HOH HOH . 
F 6 HOH A 108 608 107 HOH HOH . 
F 6 HOH A 109 609 86 HOH HOH . 
F 6 HOH A 110 610 154 HOH HOH . 
F 6 HOH A 111 611 104 HOH HOH . 
F 6 HOH A 112 612 136 HOH HOH . 
F 6 HOH A 113 613 72 HOH HOH . 
F 6 HOH A 114 614 6 HOH HOH . 
F 6 HOH A 115 615 100 HOH HOH . 
F 6 HOH A 116 616 111 HOH HOH . 
F 6 HOH A 117 617 200 HOH HOH . 
F 6 HOH A 118 618 1 HOH HOH . 
F 6 HOH A 119 619 112 HOH HOH . 
F 6 HOH A 120 620 198 HOH HOH . 
F 6 HOH A 121 621 64 HOH HOH . 
F 6 HOH A 122 622 50 HOH HOH . 
F 6 HOH A 123 623 74 HOH HOH . 
F 6 HOH A 124 624 52 HOH HOH . 
F 6 HOH A 125 625 188 HOH HOH . 
F 6 HOH A 126 626 146 HOH HOH . 
F 6 HOH A 127 627 119 HOH HOH . 
F 6 HOH A 128 628 5 HOH HOH . 
F 6 HOH A 129 629 96 HOH HOH . 
F 6 HOH A 130 630 36 HOH HOH . 
F 6 HOH A 131 631 110 HOH HOH . 
F 6 HOH A 132 632 57 HOH HOH . 
F 6 HOH A 133 633 62 HOH HOH . 
F 6 HOH A 134 634 93 HOH HOH . 
F 6 HOH A 135 635 172 HOH HOH . 
F 6 HOH A 136 636 163 HOH HOH . 
F 6 HOH A 137 637 133 HOH HOH . 
F 6 HOH A 138 638 197 HOH HOH . 
F 6 HOH A 139 639 103 HOH HOH . 
F 6 HOH A 140 640 59 HOH HOH . 
F 6 HOH A 141 641 75 HOH HOH . 
F 6 HOH A 142 642 53 HOH HOH . 
F 6 HOH A 143 643 91 HOH HOH . 
F 6 HOH A 144 644 167 HOH HOH . 
F 6 HOH A 145 645 8 HOH HOH . 
F 6 HOH A 146 646 129 HOH HOH . 
F 6 HOH A 147 647 118 HOH HOH . 
F 6 HOH A 148 648 102 HOH HOH . 
F 6 HOH A 149 649 15 HOH HOH . 
F 6 HOH A 150 650 61 HOH HOH . 
F 6 HOH A 151 651 186 HOH HOH . 
F 6 HOH A 152 652 140 HOH HOH . 
F 6 HOH A 153 653 55 HOH HOH . 
F 6 HOH A 154 654 92 HOH HOH . 
F 6 HOH A 155 655 138 HOH HOH . 
F 6 HOH A 156 656 95 HOH HOH . 
F 6 HOH A 157 657 169 HOH HOH . 
F 6 HOH A 158 658 187 HOH HOH . 
F 6 HOH A 159 659 177 HOH HOH . 
F 6 HOH A 160 660 117 HOH HOH . 
F 6 HOH A 161 661 127 HOH HOH . 
F 6 HOH A 162 662 171 HOH HOH . 
F 6 HOH A 163 663 152 HOH HOH . 
F 6 HOH A 164 664 159 HOH HOH . 
F 6 HOH A 165 665 196 HOH HOH . 
F 6 HOH A 166 666 178 HOH HOH . 
F 6 HOH A 167 667 164 HOH HOH . 
F 6 HOH A 168 668 69 HOH HOH . 
F 6 HOH A 169 669 161 HOH HOH . 
F 6 HOH A 170 670 181 HOH HOH . 
F 6 HOH A 171 671 77 HOH HOH . 
F 6 HOH A 172 672 156 HOH HOH . 
F 6 HOH A 173 673 153 HOH HOH . 
F 6 HOH A 174 674 166 HOH HOH . 
F 6 HOH A 175 675 184 HOH HOH . 
F 6 HOH A 176 676 51 HOH HOH . 
F 6 HOH A 177 677 160 HOH HOH . 
F 6 HOH A 178 678 143 HOH HOH . 
F 6 HOH A 179 679 148 HOH HOH . 
F 6 HOH A 180 680 109 HOH HOH . 
F 6 HOH A 181 681 116 HOH HOH . 
F 6 HOH A 182 682 170 HOH HOH . 
F 6 HOH A 183 683 180 HOH HOH . 
F 6 HOH A 184 684 134 HOH HOH . 
F 6 HOH A 185 685 162 HOH HOH . 
F 6 HOH A 186 686 128 HOH HOH . 
F 6 HOH A 187 687 120 HOH HOH . 
F 6 HOH A 188 688 147 HOH HOH . 
F 6 HOH A 189 689 97 HOH HOH . 
F 6 HOH A 190 690 106 HOH HOH . 
F 6 HOH A 191 691 105 HOH HOH . 
F 6 HOH A 192 692 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3 K7H . . . E 5 11.99 13.114 95.79 0.88 38.93 ? N3 K7H 404 A 1 
HETATM 2 C C4 K7H . . . E 5 13.865 13.365 92.591 0.88 33.11 ? C4 K7H 404 A 1 
HETATM 3 C C5 K7H . . . E 5 12.904 12.976 93.52 0.88 35.76 ? C5 K7H 404 A 1 
HETATM 4 C C2 K7H . . . E 5 12.242 13.029 90.807 0.88 35.48 ? C2 K7H 404 A 1 
HETATM 5 N N4 K7H . . . E 5 9.845 12.292 96.148 0.88 37.23 ? N4 K7H 404 A 1 
HETATM 6 C C7 K7H . . . E 5 10.805 12.561 95.259 0.88 42.23 ? C7 K7H 404 A 1 
HETATM 7 C C6 K7H . . . E 5 13.207 13.068 94.997 0.88 40.67 ? C6 K7H 404 A 1 
HETATM 8 N N5 K7H . . . E 5 10.626 12.247 93.976 0.88 33.32 ? N5 K7H 404 A 1 
HETATM 9 C C8 K7H . . . E 5 11.636 12.579 93.079 0.88 35.72 ? C8 K7H 404 A 1 
HETATM 10 C C9 K7H . . . E 5 11.293 12.576 91.719 0.88 35 ? C9 K7H 404 A 1 
HETATM 11 N N1 K7H . . . E 5 12.144 13.271 89.435 0.88 34.33 ? N1 K7H 404 A 1 
HETATM 12 C C3 K7H . . . E 5 13.511 13.405 91.253 0.88 35.75 ? C3 K7H 404 A 1 
HETATM 13 N N2 K7H . . . E 5 14.181 13.858 90.132 0.88 36.14 ? N2 K7H 404 A 1 
HETATM 14 C C1 K7H . . . E 5 13.319 13.778 89.093 0.88 39.16 ? C1 K7H 404 A 1 
HETATM 15 N N K7H . . . E 5 13.632 14.221 87.878 0.88 39.99 ? N K7H 404 A 1 
HETATM 16 C C K7H . . . E 5 12.728 14.164 86.744 0.88 43.07 ? C K7H 404 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           16 
#