data_6RKY
#
_model_server_result.job_id            oNvCLCrE2sAa-MdmM0ZeZQ 
_model_server_result.datetime_utc      '2025-01-18 00:25:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rky 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":404}' 
#
_entry.id    6RKY 
#
_exptl.entry_id    6RKY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              336.323 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'hexyl-[2-(3-oxidanylpyridin-2-yl)pyridin-3-yl]oxy-phosphinic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.19 
_cell.angle_gamma         90 
_cell.entry_id            6RKY 
_cell.length_a            90.766 
_cell.length_b            201.92 
_cell.length_c            90.637 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RKY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,I,J,K,L,M,N,S,U 1 1 
B,D,G,H,O,P,Q,R,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 N N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 175 A SER 161 1_555 F P01 ZK8 . A ZK8 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? 
covale ? covale2 B OG SER 175 B SER 161 1_555 H P01 ZK8 . B ZK8 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? 
covale ? covale3 C OG SER 175 C SER 161 1_555 N P01 ZK8 . C ZK8 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? 
covale ? covale4 D OG SER 175 D SER 161 1_555 R P01 ZK8 . D ZK8 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? 
#
_chem_comp.formula           'C16 H21 N2 O4 P' 
_chem_comp.formula_weight    336.323 
_chem_comp.id                ZK8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'hexyl-[2-(3-oxidanylpyridin-2-yl)pyridin-3-yl]oxy-phosphinic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C05 C06 ZK8 sing 405 n n 
C05 C04 ZK8 sing 406 n n 
O01 P01 ZK8 sing 407 n n 
C02 C01 ZK8 sing 408 n n 
C02 C03 ZK8 sing 409 n n 
C01 P01 ZK8 sing 410 n n 
C03 C04 ZK8 sing 411 n n 
O02 C14 ZK8 sing 412 n n 
P01 O03 ZK8 sing 413 n n 
C14 C15 ZK8 doub 414 n y 
C14 C13 ZK8 sing 415 n y 
O03 C07 ZK8 sing 416 n n 
C15 C16 ZK8 sing 417 n y 
C07 C12 ZK8 doub 418 n y 
C07 C08 ZK8 sing 419 n y 
C12 C11 ZK8 sing 420 n y 
C13 C08 ZK8 sing 421 n n 
C13 N02 ZK8 doub 422 n y 
C16 C17 ZK8 doub 423 n y 
C08 N01 ZK8 doub 424 n y 
C11 C10 ZK8 doub 425 n y 
N01 C10 ZK8 sing 426 n y 
N02 C17 ZK8 sing 427 n y 
C10 H1 ZK8 sing 428 n n 
C11 H2 ZK8 sing 429 n n 
C12 H3 ZK8 sing 430 n n 
C15 H4 ZK8 sing 431 n n 
C16 H5 ZK8 sing 432 n n 
C17 H6 ZK8 sing 433 n n 
C01 H7 ZK8 sing 434 n n 
C01 H8 ZK8 sing 435 n n 
O01 H9 ZK8 sing 436 n n 
C02 H10 ZK8 sing 437 n n 
C02 H11 ZK8 sing 438 n n 
O02 H12 ZK8 sing 439 n n 
C03 H13 ZK8 sing 440 n n 
C03 H14 ZK8 sing 441 n n 
C04 H15 ZK8 sing 442 n n 
C04 H16 ZK8 sing 443 n n 
C05 H17 ZK8 sing 444 n n 
C05 H18 ZK8 sing 445 n n 
C06 H19 ZK8 sing 446 n n 
C06 H20 ZK8 sing 447 n n 
C06 H21 ZK8 sing 448 n n 
P01 O1 ZK8 doub 449 n n 
#
_atom_sites.entry_id                     6RKY 
_atom_sites.fract_transf_matrix[1][1]    0.011017 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004494 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004952 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011916 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 401 401 GOL GOL . 
F 3 ZK8 A 1 402 161 ZK8 140 . 
G 2 GOL B 1 401 401 GOL GOL . 
H 3 ZK8 B 1 402 161 ZK8 140 . 
I 2 GOL C 1 401 401 GOL GOL . 
J 2 GOL C 1 402 402 GOL GOL . 
K 4 PEG C 1 403 501 PEG PEG . 
L 4 PEG C 1 404 502 PEG PEG . 
M 4 PEG C 1 405 503 PEG PEG . 
N 3 ZK8 C 1 406 161 ZK8 140 . 
O 2 GOL D 1 401 401 GOL GOL . 
P 2 GOL D 1 402 402 GOL GOL . 
Q 4 PEG D 1 403 501 PEG PEG . 
R 3 ZK8 D 1 404 161 ZK8 140 . 
S 5 HOH A 1 501 14 HOH HOH . 
S 5 HOH A 2 502 4 HOH HOH . 
S 5 HOH A 3 503 5 HOH HOH . 
S 5 HOH A 4 504 68 HOH HOH . 
S 5 HOH A 5 505 1 HOH HOH . 
S 5 HOH A 6 506 6 HOH HOH . 
S 5 HOH A 7 507 69 HOH HOH . 
S 5 HOH A 8 508 15 HOH HOH . 
S 5 HOH A 9 509 16 HOH HOH . 
S 5 HOH A 10 510 58 HOH HOH . 
S 5 HOH A 11 511 67 HOH HOH . 
S 5 HOH A 12 512 9 HOH HOH . 
S 5 HOH A 13 513 11 HOH HOH . 
S 5 HOH A 14 514 12 HOH HOH . 
S 5 HOH A 15 515 13 HOH HOH . 
S 5 HOH A 16 516 10 HOH HOH . 
T 5 HOH B 1 501 29 HOH HOH . 
T 5 HOH B 2 502 23 HOH HOH . 
T 5 HOH B 3 503 70 HOH HOH . 
T 5 HOH B 4 504 27 HOH HOH . 
T 5 HOH B 5 505 2 HOH HOH . 
T 5 HOH B 6 506 25 HOH HOH . 
T 5 HOH B 7 507 24 HOH HOH . 
T 5 HOH B 8 508 28 HOH HOH . 
T 5 HOH B 9 509 7 HOH HOH . 
T 5 HOH B 10 510 20 HOH HOH . 
T 5 HOH B 11 511 21 HOH HOH . 
T 5 HOH B 12 512 65 HOH HOH . 
T 5 HOH B 13 513 26 HOH HOH . 
T 5 HOH B 14 514 19 HOH HOH . 
U 5 HOH C 1 501 61 HOH HOH . 
U 5 HOH C 2 502 39 HOH HOH . 
U 5 HOH C 3 503 34 HOH HOH . 
U 5 HOH C 4 504 32 HOH HOH . 
U 5 HOH C 5 505 59 HOH HOH . 
U 5 HOH C 6 506 63 HOH HOH . 
U 5 HOH C 7 507 18 HOH HOH . 
U 5 HOH C 8 508 31 HOH HOH . 
U 5 HOH C 9 509 8 HOH HOH . 
U 5 HOH C 10 510 60 HOH HOH . 
U 5 HOH C 11 511 40 HOH HOH . 
U 5 HOH C 12 512 17 HOH HOH . 
U 5 HOH C 13 513 3 HOH HOH . 
U 5 HOH C 14 514 33 HOH HOH . 
U 5 HOH C 15 515 38 HOH HOH . 
U 5 HOH C 16 516 36 HOH HOH . 
U 5 HOH C 17 517 35 HOH HOH . 
U 5 HOH C 18 518 71 HOH HOH . 
U 5 HOH C 19 519 37 HOH HOH . 
V 5 HOH D 1 501 53 HOH HOH . 
V 5 HOH D 2 502 51 HOH HOH . 
V 5 HOH D 3 503 30 HOH HOH . 
V 5 HOH D 4 504 72 HOH HOH . 
V 5 HOH D 5 505 22 HOH HOH . 
V 5 HOH D 6 506 49 HOH HOH . 
V 5 HOH D 7 507 64 HOH HOH . 
V 5 HOH D 8 508 57 HOH HOH . 
V 5 HOH D 9 509 62 HOH HOH . 
V 5 HOH D 10 510 44 HOH HOH . 
V 5 HOH D 11 511 54 HOH HOH . 
V 5 HOH D 12 512 47 HOH HOH . 
V 5 HOH D 13 513 45 HOH HOH . 
V 5 HOH D 14 514 55 HOH HOH . 
V 5 HOH D 15 515 56 HOH HOH . 
V 5 HOH D 16 516 43 HOH HOH . 
V 5 HOH D 17 517 48 HOH HOH . 
V 5 HOH D 18 518 50 HOH HOH . 
V 5 HOH D 19 519 66 HOH HOH . 
V 5 HOH D 20 520 41 HOH HOH . 
V 5 HOH D 21 521 46 HOH HOH . 
V 5 HOH D 22 522 52 HOH HOH . 
V 5 HOH D 23 523 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 ZK8 . . . R 3 12.86 -43.925 24.937 1 104.16 ? C10 ZK8 404 D 1 
HETATM 2 C C11 ZK8 . . . R 3 12.278 -42.662 25.037 1 98.64 ? C11 ZK8 404 D 1 
HETATM 3 C C12 ZK8 . . . R 3 10.894 -42.525 25.153 1 101.75 ? C12 ZK8 404 D 1 
HETATM 4 C C13 ZK8 . . . R 3 10.021 -46.169 25.062 1 126.79 ? C13 ZK8 404 D 1 
HETATM 5 C C14 ZK8 . . . R 3 8.627 -46.428 24.987 1 124.61 ? C14 ZK8 404 D 1 
HETATM 6 C C15 ZK8 . . . R 3 8.145 -47.752 24.992 1 123.82 ? C15 ZK8 404 D 1 
HETATM 7 C C16 ZK8 . . . R 3 9.031 -48.834 25.065 1 126.26 ? C16 ZK8 404 D 1 
HETATM 8 C C17 ZK8 . . . R 3 10.414 -48.596 25.138 1 129.7 ? C17 ZK8 404 D 1 
HETATM 9 P P01 ZK8 . . . R 3 7.906 -41.976 25.403 1 75.27 ? P01 ZK8 404 D 1 
HETATM 10 C C01 ZK8 . . . R 3 6.426 -42.226 24.428 1 77.31 ? C01 ZK8 404 D 1 
HETATM 11 C C07 ZK8 . . . R 3 10.035 -43.655 25.177 1 104.5 ? C07 ZK8 404 D 1 
HETATM 12 N N01 ZK8 . . . R 3 11.97 -44.899 24.961 1 113.75 ? N01 ZK8 404 D 1 
HETATM 13 C C02 ZK8 . . . R 3 5.103 -42.114 25.169 1 80.84 ? C02 ZK8 404 D 1 
HETATM 14 C C08 ZK8 . . . R 3 10.639 -44.955 25.065 1 117.06 ? C08 ZK8 404 D 1 
HETATM 15 N N02 ZK8 . . . R 3 10.724 -47.304 25.125 1 134.32 ? N02 ZK8 404 D 1 
HETATM 16 O O02 ZK8 . . . R 3 7.654 -45.386 24.918 1 134.98 ? O02 ZK8 404 D 1 
HETATM 17 C C03 ZK8 . . . R 3 4.168 -41.037 24.621 1 81.18 ? C03 ZK8 404 D 1 
HETATM 18 O O03 ZK8 . . . R 3 8.593 -43.476 25.306 1 94.53 ? O03 ZK8 404 D 1 
HETATM 19 C C04 ZK8 . . . R 3 2.722 -41.275 25.065 1 82.13 ? C04 ZK8 404 D 1 
HETATM 20 C C05 ZK8 . . . R 3 2.328 -40.346 26.216 1 87.75 ? C05 ZK8 404 D 1 
HETATM 21 C C06 ZK8 . . . R 3 1.521 -41.07 27.295 1 89 ? C06 ZK8 404 D 1 
HETATM 22 O O1 ZK8 . . . R 3 7.67 -41.407 26.777 1 68.53 ? O1 ZK8 404 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           487 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           22 
#