data_6RM2 # _model_server_result.job_id 0up872HSWtjaytVMf_fRpQ _model_server_result.datetime_utc '2024-11-25 06:36:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":403}' # _entry.id 6RM2 # _exptl.entry_id 6RM2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RM2 _cell.length_a 90.82 _cell.length_b 90.82 _cell.length_c 192.17 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -90.82 90.82 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O2G ATP . A ATP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc2 C O1A ATP . A ATP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc3 B O GLY 62 B GLY 42 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc4 G O3G ATP . B ATP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc5 G O2A ATP . B ATP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 222 n n P O2P IMP sing 223 n n P O3P IMP sing 224 n n P O5' IMP sing 225 n n O2P HOP2 IMP sing 226 n n O3P HOP3 IMP sing 227 n n O5' C5' IMP sing 228 n n C5' C4' IMP sing 229 n n C5' "H5'1" IMP sing 230 n n C5' "H5'2" IMP sing 231 n n C4' O4' IMP sing 232 n n C4' C3' IMP sing 233 n n C4' H4' IMP sing 234 n n O4' C1' IMP sing 235 n n C3' O3' IMP sing 236 n n C3' C2' IMP sing 237 n n C3' H3' IMP sing 238 n n O3' HO3' IMP sing 239 n n C2' O2' IMP sing 240 n n C2' C1' IMP sing 241 n n C2' H2' IMP sing 242 n n O2' HO2' IMP sing 243 n n C1' N9 IMP sing 244 n n C1' H1' IMP sing 245 n n N9 C8 IMP sing 246 n y N9 C4 IMP sing 247 n y C8 N7 IMP doub 248 n y C8 H8 IMP sing 249 n n N7 C5 IMP sing 250 n y C5 C6 IMP sing 251 n n C5 C4 IMP doub 252 n y C6 O6 IMP doub 253 n n C6 N1 IMP sing 254 n n N1 C2 IMP sing 255 n n N1 HN1 IMP sing 256 n n C2 N3 IMP doub 257 n n C2 H2 IMP sing 258 n n N3 C4 IMP sing 259 n n # _atom_sites.entry_id 6RM2 _atom_sites.fract_transf_matrix[1][1] 0.011011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 401 1 ATP ATP . D 3 MG A 1 402 2 MG MG . E 4 IMP A 1 403 1 IMP IMP . F 5 SO4 A 1 404 2 SO4 SO4 . G 2 ATP B 1 401 2 ATP ATP . H 3 MG B 1 402 1 MG MG . I 4 IMP B 1 403 2 IMP IMP . J 5 SO4 B 1 404 1 SO4 SO4 . K 6 HOH A 1 501 132 HOH HOH . K 6 HOH A 2 502 112 HOH HOH . K 6 HOH A 3 503 60 HOH HOH . K 6 HOH A 4 504 127 HOH HOH . K 6 HOH A 5 505 63 HOH HOH . K 6 HOH A 6 506 155 HOH HOH . K 6 HOH A 7 507 15 HOH HOH . K 6 HOH A 8 508 79 HOH HOH . K 6 HOH A 9 509 89 HOH HOH . K 6 HOH A 10 510 88 HOH HOH . K 6 HOH A 11 511 90 HOH HOH . K 6 HOH A 12 512 85 HOH HOH . K 6 HOH A 13 513 203 HOH HOH . K 6 HOH A 14 514 102 HOH HOH . K 6 HOH A 15 515 169 HOH HOH . K 6 HOH A 16 516 211 HOH HOH . K 6 HOH A 17 517 65 HOH HOH . K 6 HOH A 18 518 171 HOH HOH . K 6 HOH A 19 519 18 HOH HOH . K 6 HOH A 20 520 142 HOH HOH . K 6 HOH A 21 521 86 HOH HOH . K 6 HOH A 22 522 144 HOH HOH . K 6 HOH A 23 523 95 HOH HOH . K 6 HOH A 24 524 4 HOH HOH . K 6 HOH A 25 525 125 HOH HOH . K 6 HOH A 26 526 68 HOH HOH . K 6 HOH A 27 527 264 HOH HOH . K 6 HOH A 28 528 258 HOH HOH . K 6 HOH A 29 529 23 HOH HOH . K 6 HOH A 30 530 206 HOH HOH . K 6 HOH A 31 531 126 HOH HOH . K 6 HOH A 32 532 28 HOH HOH . K 6 HOH A 33 533 177 HOH HOH . K 6 HOH A 34 534 173 HOH HOH . K 6 HOH A 35 535 2 HOH HOH . K 6 HOH A 36 536 121 HOH HOH . K 6 HOH A 37 537 11 HOH HOH . K 6 HOH A 38 538 131 HOH HOH . K 6 HOH A 39 539 82 HOH HOH . K 6 HOH A 40 540 9 HOH HOH . K 6 HOH A 41 541 32 HOH HOH . K 6 HOH A 42 542 34 HOH HOH . K 6 HOH A 43 543 20 HOH HOH . K 6 HOH A 44 544 204 HOH HOH . K 6 HOH A 45 545 66 HOH HOH . K 6 HOH A 46 546 35 HOH HOH . K 6 HOH A 47 547 22 HOH HOH . K 6 HOH A 48 548 141 HOH HOH . K 6 HOH A 49 549 105 HOH HOH . K 6 HOH A 50 550 178 HOH HOH . K 6 HOH A 51 551 170 HOH HOH . K 6 HOH A 52 552 12 HOH HOH . K 6 HOH A 53 553 175 HOH HOH . K 6 HOH A 54 554 129 HOH HOH . K 6 HOH A 55 555 130 HOH HOH . K 6 HOH A 56 556 43 HOH HOH . K 6 HOH A 57 557 17 HOH HOH . K 6 HOH A 58 558 58 HOH HOH . K 6 HOH A 59 559 30 HOH HOH . K 6 HOH A 60 560 138 HOH HOH . K 6 HOH A 61 561 3 HOH HOH . K 6 HOH A 62 562 134 HOH HOH . K 6 HOH A 63 563 118 HOH HOH . K 6 HOH A 64 564 84 HOH HOH . K 6 HOH A 65 565 80 HOH HOH . K 6 HOH A 66 566 40 HOH HOH . K 6 HOH A 67 567 139 HOH HOH . K 6 HOH A 68 568 51 HOH HOH . K 6 HOH A 69 569 156 HOH HOH . K 6 HOH A 70 570 128 HOH HOH . K 6 HOH A 71 571 71 HOH HOH . K 6 HOH A 72 572 136 HOH HOH . K 6 HOH A 73 573 164 HOH HOH . K 6 HOH A 74 574 50 HOH HOH . K 6 HOH A 75 575 48 HOH HOH . K 6 HOH A 76 576 104 HOH HOH . K 6 HOH A 77 577 94 HOH HOH . K 6 HOH A 78 578 49 HOH HOH . K 6 HOH A 79 579 133 HOH HOH . K 6 HOH A 80 580 271 HOH HOH . K 6 HOH A 81 581 160 HOH HOH . K 6 HOH A 82 582 25 HOH HOH . K 6 HOH A 83 583 260 HOH HOH . K 6 HOH A 84 584 29 HOH HOH . K 6 HOH A 85 585 168 HOH HOH . K 6 HOH A 86 586 99 HOH HOH . K 6 HOH A 87 587 117 HOH HOH . K 6 HOH A 88 588 56 HOH HOH . K 6 HOH A 89 589 96 HOH HOH . K 6 HOH A 90 590 242 HOH HOH . K 6 HOH A 91 591 111 HOH HOH . K 6 HOH A 92 592 38 HOH HOH . K 6 HOH A 93 593 157 HOH HOH . K 6 HOH A 94 594 176 HOH HOH . K 6 HOH A 95 595 98 HOH HOH . K 6 HOH A 96 596 188 HOH HOH . K 6 HOH A 97 597 238 HOH HOH . K 6 HOH A 98 598 124 HOH HOH . K 6 HOH A 99 599 255 HOH HOH . K 6 HOH A 100 600 72 HOH HOH . K 6 HOH A 101 601 187 HOH HOH . K 6 HOH A 102 602 158 HOH HOH . K 6 HOH A 103 603 77 HOH HOH . K 6 HOH A 104 604 59 HOH HOH . K 6 HOH A 105 605 101 HOH HOH . K 6 HOH A 106 606 75 HOH HOH . K 6 HOH A 107 607 261 HOH HOH . K 6 HOH A 108 608 114 HOH HOH . K 6 HOH A 109 609 103 HOH HOH . K 6 HOH A 110 610 189 HOH HOH . K 6 HOH A 111 611 191 HOH HOH . K 6 HOH A 112 612 123 HOH HOH . K 6 HOH A 113 613 154 HOH HOH . K 6 HOH A 114 614 108 HOH HOH . K 6 HOH A 115 615 186 HOH HOH . K 6 HOH A 116 616 122 HOH HOH . K 6 HOH A 117 617 97 HOH HOH . L 6 HOH B 1 501 201 HOH HOH . L 6 HOH B 2 502 67 HOH HOH . L 6 HOH B 3 503 223 HOH HOH . L 6 HOH B 4 504 61 HOH HOH . L 6 HOH B 5 505 153 HOH HOH . L 6 HOH B 6 506 10 HOH HOH . L 6 HOH B 7 507 87 HOH HOH . L 6 HOH B 8 508 115 HOH HOH . L 6 HOH B 9 509 120 HOH HOH . L 6 HOH B 10 510 135 HOH HOH . L 6 HOH B 11 511 27 HOH HOH . L 6 HOH B 12 512 179 HOH HOH . L 6 HOH B 13 513 36 HOH HOH . L 6 HOH B 14 514 44 HOH HOH . L 6 HOH B 15 515 246 HOH HOH . L 6 HOH B 16 516 140 HOH HOH . L 6 HOH B 17 517 14 HOH HOH . L 6 HOH B 18 518 53 HOH HOH . L 6 HOH B 19 519 24 HOH HOH . L 6 HOH B 20 520 5 HOH HOH . L 6 HOH B 21 521 194 HOH HOH . L 6 HOH B 22 522 106 HOH HOH . L 6 HOH B 23 523 64 HOH HOH . L 6 HOH B 24 524 159 HOH HOH . L 6 HOH B 25 525 208 HOH HOH . L 6 HOH B 26 526 37 HOH HOH . L 6 HOH B 27 527 83 HOH HOH . L 6 HOH B 28 528 172 HOH HOH . L 6 HOH B 29 529 45 HOH HOH . L 6 HOH B 30 530 193 HOH HOH . L 6 HOH B 31 531 55 HOH HOH . L 6 HOH B 32 532 1 HOH HOH . L 6 HOH B 33 533 174 HOH HOH . L 6 HOH B 34 534 78 HOH HOH . L 6 HOH B 35 535 16 HOH HOH . L 6 HOH B 36 536 57 HOH HOH . L 6 HOH B 37 537 165 HOH HOH . L 6 HOH B 38 538 8 HOH HOH . L 6 HOH B 39 539 216 HOH HOH . L 6 HOH B 40 540 147 HOH HOH . L 6 HOH B 41 541 202 HOH HOH . L 6 HOH B 42 542 239 HOH HOH . L 6 HOH B 43 543 47 HOH HOH . L 6 HOH B 44 544 26 HOH HOH . L 6 HOH B 45 545 13 HOH HOH . L 6 HOH B 46 546 39 HOH HOH . L 6 HOH B 47 547 31 HOH HOH . L 6 HOH B 48 548 69 HOH HOH . L 6 HOH B 49 549 76 HOH HOH . L 6 HOH B 50 550 119 HOH HOH . L 6 HOH B 51 551 92 HOH HOH . L 6 HOH B 52 552 145 HOH HOH . L 6 HOH B 53 553 200 HOH HOH . L 6 HOH B 54 554 100 HOH HOH . L 6 HOH B 55 555 21 HOH HOH . L 6 HOH B 56 556 52 HOH HOH . L 6 HOH B 57 557 167 HOH HOH . L 6 HOH B 58 558 19 HOH HOH . L 6 HOH B 59 559 6 HOH HOH . L 6 HOH B 60 560 252 HOH HOH . L 6 HOH B 61 561 74 HOH HOH . L 6 HOH B 62 562 73 HOH HOH . L 6 HOH B 63 563 196 HOH HOH . L 6 HOH B 64 564 81 HOH HOH . L 6 HOH B 65 565 205 HOH HOH . L 6 HOH B 66 566 33 HOH HOH . L 6 HOH B 67 567 93 HOH HOH . L 6 HOH B 68 568 162 HOH HOH . L 6 HOH B 69 569 62 HOH HOH . L 6 HOH B 70 570 41 HOH HOH . L 6 HOH B 71 571 7 HOH HOH . L 6 HOH B 72 572 198 HOH HOH . L 6 HOH B 73 573 265 HOH HOH . L 6 HOH B 74 574 54 HOH HOH . L 6 HOH B 75 575 110 HOH HOH . L 6 HOH B 76 576 247 HOH HOH . L 6 HOH B 77 577 42 HOH HOH . L 6 HOH B 78 578 109 HOH HOH . L 6 HOH B 79 579 241 HOH HOH . L 6 HOH B 80 580 197 HOH HOH . L 6 HOH B 81 581 180 HOH HOH . L 6 HOH B 82 582 199 HOH HOH . L 6 HOH B 83 583 91 HOH HOH . L 6 HOH B 84 584 163 HOH HOH . L 6 HOH B 85 585 70 HOH HOH . L 6 HOH B 86 586 263 HOH HOH . L 6 HOH B 87 587 107 HOH HOH . L 6 HOH B 88 588 116 HOH HOH . L 6 HOH B 89 589 113 HOH HOH . L 6 HOH B 90 590 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . I 4 14.979 59.299 -1.328 1 68.6 ? P IMP 403 B 1 HETATM 2 O O1P IMP . . . I 4 16.362 58.768 -1.393 1 71.46 ? O1P IMP 403 B 1 HETATM 3 O O2P IMP . . . I 4 14.79 60.523 -0.459 1 68.03 ? O2P IMP 403 B 1 HETATM 4 O O3P IMP . . . I 4 13.979 58.248 -0.916 1 67.93 ? O3P IMP 403 B 1 HETATM 5 O O5' IMP . . . I 4 14.617 59.726 -2.811 1 79.28 ? O5' IMP 403 B 1 HETATM 6 C C5' IMP . . . I 4 14.903 58.727 -3.822 1 86.69 ? C5' IMP 403 B 1 HETATM 7 C C4' IMP . . . I 4 13.791 58.625 -4.838 1 92.48 ? C4' IMP 403 B 1 HETATM 8 O O4' IMP . . . I 4 12.501 58.79 -4.204 1 93.91 ? O4' IMP 403 B 1 HETATM 9 C C3' IMP . . . I 4 13.833 59.641 -5.974 1 96.37 ? C3' IMP 403 B 1 HETATM 10 O O3' IMP . . . I 4 13.409 59.061 -7.208 1 97.8 ? O3' IMP 403 B 1 HETATM 11 C C2' IMP . . . I 4 12.94 60.767 -5.439 1 96.41 ? C2' IMP 403 B 1 HETATM 12 O O2' IMP . . . I 4 12.427 61.543 -6.513 1 95.63 ? O2' IMP 403 B 1 HETATM 13 C C1' IMP . . . I 4 11.87 59.97 -4.674 1 97.12 ? C1' IMP 403 B 1 HETATM 14 N N9 IMP . . . I 4 11.218 60.656 -3.521 1 101.23 ? N9 IMP 403 B 1 HETATM 15 C C8 IMP . . . I 4 11.333 60.332 -2.184 1 102.19 ? C8 IMP 403 B 1 HETATM 16 N N7 IMP . . . I 4 10.479 60.968 -1.405 1 102.24 ? N7 IMP 403 B 1 HETATM 17 C C5 IMP . . . I 4 9.755 61.769 -2.275 1 103.4 ? C5 IMP 403 B 1 HETATM 18 C C6 IMP . . . I 4 8.58 62.639 -2.051 1 103.41 ? C6 IMP 403 B 1 HETATM 19 O O6 IMP . . . I 4 7.992 62.857 -0.993 1 103.6 ? O6 IMP 403 B 1 HETATM 20 N N1 IMP . . . I 4 8.113 63.192 -3.239 1 103.99 ? N1 IMP 403 B 1 HETATM 21 C C2 IMP . . . I 4 8.66 62.967 -4.465 1 105.04 ? C2 IMP 403 B 1 HETATM 22 N N3 IMP . . . I 4 9.708 62.193 -4.706 1 105.36 ? N3 IMP 403 B 1 HETATM 23 C C4 IMP . . . I 4 10.217 61.606 -3.586 1 103.79 ? C4 IMP 403 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #