data_6RM5 # _model_server_result.job_id PC8D45bvq0oY5mcW539v2A _model_server_result.datetime_utc '2025-07-07 09:34:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rm5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 6RM5 # _exptl.entry_id 6RM5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.363 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-(6-azanyl-5-methyl-pyridin-2-yl)-1-benzothiophene-2-carboximidamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RM5 _cell.length_a 81.729 _cell.length_b 111.89 _cell.length_c 62.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RM5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 5 P LYS 386 1_555 B N TPO 6 P TPO 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 B C TPO 6 P TPO 387 1_555 B N GLU 7 P GLU 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? metalc ? metalc1 A OE1 GLU 7 A GLU 2 1_555 E MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc2 A OE1 GLU 7 A GLU 2 1_555 E MG MG . A MG 303 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc3 A OE1 GLU 40 A GLU 35 1_555 C MG MG . A MG 301 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc4 A OE2 GLU 40 A GLU 35 1_555 C MG MG . A MG 301 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc5 A OE2 GLU 94 A GLU 89 1_555 D MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc6 A O GLU 115 A GLU 110 1_555 C MG MG . A MG 301 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc7 A OE2 GLU 193 A GLU 188 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc8 E MG MG . A MG 303 1_555 I O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc9 E MG MG . A MG 303 1_555 I O HOH . A HOH 409 3_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? # _chem_comp.formula 'C15 H14 N4 S' _chem_comp.formula_weight 282.363 _chem_comp.id K8W _chem_comp.mon_nstd_flag . _chem_comp.name 7-(6-azanyl-5-methyl-pyridin-2-yl)-1-benzothiophene-2-carboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 K8W sing 173 n n C03 C02 K8W doub 174 n y C03 C04 K8W sing 175 n y C02 C07 K8W sing 176 n y C04 C05 K8W doub 177 n y C07 N08 K8W sing 178 n n C07 N06 K8W doub 179 n y N19 C18 K8W sing 180 n n C05 N06 K8W sing 181 n y C05 C09 K8W sing 182 n n S15 C16 K8W sing 183 n y S15 C14 K8W sing 184 n y C18 C16 K8W sing 185 n n C18 N20 K8W doub 186 n n C09 C14 K8W doub 187 n y C09 C10 K8W sing 188 n y C16 C17 K8W doub 189 n y C14 C13 K8W sing 190 n y C10 C11 K8W doub 191 n y C17 C13 K8W sing 192 n y C13 C12 K8W doub 193 n y C11 C12 K8W sing 194 n y C10 H101 K8W sing 195 n n C17 H171 K8W sing 196 n n C01 H011 K8W sing 197 n n C01 H012 K8W sing 198 n n C01 H013 K8W sing 199 n n C03 H031 K8W sing 200 n n C04 H041 K8W sing 201 n n C11 H111 K8W sing 202 n n C12 H121 K8W sing 203 n n N08 H082 K8W sing 204 n n N08 H081 K8W sing 205 n n N19 H191 K8W sing 206 n n N19 H1 K8W sing 207 n n N20 H201 K8W sing 208 n n # _atom_sites.entry_id 6RM5 _atom_sites.fract_transf_matrix[1][1] 0.012235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 301 249 MG MG . D 3 MG A 1 302 250 MG MG . E 3 MG A 1 303 251 MG MG . F 4 CL A 1 304 252 CL CL . G 5 K8W A 1 305 1 K8W LIG . H 5 K8W A 1 306 2 K8W LIG . I 6 HOH A 1 401 81 HOH HOH . I 6 HOH A 2 402 46 HOH HOH . I 6 HOH A 3 403 35 HOH HOH . I 6 HOH A 4 404 44 HOH HOH . I 6 HOH A 5 405 5 HOH HOH . I 6 HOH A 6 406 33 HOH HOH . I 6 HOH A 7 407 22 HOH HOH . I 6 HOH A 8 408 53 HOH HOH . I 6 HOH A 9 409 11 HOH HOH . I 6 HOH A 10 410 58 HOH HOH . I 6 HOH A 11 411 52 HOH HOH . I 6 HOH A 12 412 8 HOH HOH . I 6 HOH A 13 413 30 HOH HOH . I 6 HOH A 14 414 34 HOH HOH . I 6 HOH A 15 415 19 HOH HOH . I 6 HOH A 16 416 73 HOH HOH . I 6 HOH A 17 417 55 HOH HOH . I 6 HOH A 18 418 80 HOH HOH . I 6 HOH A 19 419 21 HOH HOH . I 6 HOH A 20 420 72 HOH HOH . I 6 HOH A 21 421 38 HOH HOH . I 6 HOH A 22 422 20 HOH HOH . I 6 HOH A 23 423 23 HOH HOH . I 6 HOH A 24 424 3 HOH HOH . I 6 HOH A 25 425 85 HOH HOH . I 6 HOH A 26 426 47 HOH HOH . I 6 HOH A 27 427 7 HOH HOH . I 6 HOH A 28 428 59 HOH HOH . I 6 HOH A 29 429 75 HOH HOH . I 6 HOH A 30 430 71 HOH HOH . I 6 HOH A 31 431 1 HOH HOH . I 6 HOH A 32 432 13 HOH HOH . I 6 HOH A 33 433 15 HOH HOH . I 6 HOH A 34 434 32 HOH HOH . I 6 HOH A 35 435 10 HOH HOH . I 6 HOH A 36 436 17 HOH HOH . I 6 HOH A 37 437 9 HOH HOH . I 6 HOH A 38 438 4 HOH HOH . I 6 HOH A 39 439 43 HOH HOH . I 6 HOH A 40 440 63 HOH HOH . I 6 HOH A 41 441 37 HOH HOH . I 6 HOH A 42 442 66 HOH HOH . I 6 HOH A 43 443 65 HOH HOH . I 6 HOH A 44 444 67 HOH HOH . I 6 HOH A 45 445 6 HOH HOH . I 6 HOH A 46 446 31 HOH HOH . I 6 HOH A 47 447 39 HOH HOH . I 6 HOH A 48 448 40 HOH HOH . I 6 HOH A 49 449 42 HOH HOH . I 6 HOH A 50 450 26 HOH HOH . I 6 HOH A 51 451 18 HOH HOH . I 6 HOH A 52 452 12 HOH HOH . I 6 HOH A 53 453 69 HOH HOH . I 6 HOH A 54 454 57 HOH HOH . I 6 HOH A 55 455 14 HOH HOH . I 6 HOH A 56 456 82 HOH HOH . I 6 HOH A 57 457 79 HOH HOH . I 6 HOH A 58 458 41 HOH HOH . I 6 HOH A 59 459 36 HOH HOH . I 6 HOH A 60 460 70 HOH HOH . I 6 HOH A 61 461 48 HOH HOH . I 6 HOH A 62 462 29 HOH HOH . I 6 HOH A 63 463 64 HOH HOH . I 6 HOH A 64 464 86 HOH HOH . I 6 HOH A 65 465 27 HOH HOH . I 6 HOH A 66 466 61 HOH HOH . I 6 HOH A 67 467 51 HOH HOH . I 6 HOH A 68 468 62 HOH HOH . I 6 HOH A 69 469 50 HOH HOH . I 6 HOH A 70 470 76 HOH HOH . I 6 HOH A 71 471 28 HOH HOH . I 6 HOH A 72 472 84 HOH HOH . I 6 HOH A 73 473 60 HOH HOH . I 6 HOH A 74 474 74 HOH HOH . I 6 HOH A 75 475 16 HOH HOH . I 6 HOH A 76 476 25 HOH HOH . I 6 HOH A 77 477 68 HOH HOH . I 6 HOH A 78 478 45 HOH HOH . I 6 HOH A 79 479 49 HOH HOH . I 6 HOH A 80 480 83 HOH HOH . I 6 HOH A 81 481 77 HOH HOH . I 6 HOH A 82 482 56 HOH HOH . I 6 HOH A 83 483 78 HOH HOH . I 6 HOH A 84 484 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 K8W . . . G 5 18.421 21.95 -5.024 1 34.29 ? C10 K8W 305 A 1 HETATM 2 C C13 K8W . . . G 5 18.856 19.207 -4.836 1 34.22 ? C13 K8W 305 A 1 HETATM 3 C C17 K8W . . . G 5 19.135 17.815 -4.836 1 31.05 ? C17 K8W 305 A 1 HETATM 4 C C01 K8W . . . G 5 20.655 24.423 -10.517 1 31.64 ? C01 K8W 305 A 1 HETATM 5 C C02 K8W . . . G 5 20.216 23.574 -9.318 1 33.65 ? C02 K8W 305 A 1 HETATM 6 C C03 K8W . . . G 5 19.947 22.236 -9.518 1 30.4 ? C03 K8W 305 A 1 HETATM 7 C C04 K8W . . . G 5 19.568 21.452 -8.435 1 33.57 ? C04 K8W 305 A 1 HETATM 8 C C05 K8W . . . G 5 19.48 22.005 -7.176 1 28.73 ? C05 K8W 305 A 1 HETATM 9 C C07 K8W . . . G 5 20.102 24.076 -8.023 1 32.24 ? C07 K8W 305 A 1 HETATM 10 C C09 K8W . . . G 5 19.082 21.274 -6.065 1 34.09 ? C09 K8W 305 A 1 HETATM 11 C C11 K8W . . . G 5 17.969 21.272 -3.893 1 36.49 ? C11 K8W 305 A 1 HETATM 12 C C12 K8W . . . G 5 18.18 19.903 -3.789 1 36.29 ? C12 K8W 305 A 1 HETATM 13 C C14 K8W . . . G 5 19.297 19.895 -5.962 1 33.12 ? C14 K8W 305 A 1 HETATM 14 C C16 K8W . . . G 5 19.798 17.356 -5.967 1 33.46 ? C16 K8W 305 A 1 HETATM 15 C C18 K8W . . . G 5 20.258 15.954 -6.326 1 33.02 ? C18 K8W 305 A 1 HETATM 16 N N06 K8W . . . G 5 19.754 23.282 -7.016 1 31.02 ? N06 K8W 305 A 1 HETATM 17 N N08 K8W . . . G 5 20.371 25.469 -7.71 1 35.75 ? N08 K8W 305 A 1 HETATM 18 N N19 K8W . . . G 5 20.947 15.749 -7.351 1 30.91 ? N19 K8W 305 A 1 HETATM 19 N N20 K8W . . . G 5 19.891 14.855 -5.48 1 28.3 ? N20 K8W 305 A 1 HETATM 20 S S15 K8W . . . G 5 20.058 18.71 -6.997 1 28.83 ? S15 K8W 305 A 1 HETATM 21 H H101 K8W . . . G 5 18.268 22.863 -5.099 1 41.15 ? H101 K8W 305 A 1 HETATM 22 H H171 K8W . . . G 5 18.889 17.254 -4.137 1 37.26 ? H171 K8W 305 A 1 HETATM 23 H H011 K8W . . . G 5 21.429 24.052 -10.897 1 37.96 ? H011 K8W 305 A 1 HETATM 24 H H012 K8W . . . G 5 20.836 25.299 -10.23 1 37.96 ? H012 K8W 305 A 1 HETATM 25 H H013 K8W . . . G 5 19.968 24.439 -11.157 1 37.96 ? H013 K8W 305 A 1 HETATM 26 H H031 K8W . . . G 5 20.018 21.864 -10.366 1 36.48 ? H031 K8W 305 A 1 HETATM 27 H H041 K8W . . . G 5 19.38 20.551 -8.559 1 40.28 ? H041 K8W 305 A 1 HETATM 28 H H111 K8W . . . G 5 17.534 21.732 -3.214 1 43.79 ? H111 K8W 305 A 1 HETATM 29 H H121 K8W . . . G 5 17.895 19.445 -3.034 1 43.55 ? H121 K8W 305 A 1 HETATM 30 H H082 K8W . . . G 5 20.854 25.949 -8.247 1 42.9 ? H082 K8W 305 A 1 HETATM 31 H H081 K8W . . . G 5 20.048 25.82 -6.985 1 42.9 ? H081 K8W 305 A 1 HETATM 32 H H191 K8W . . . G 5 21.175 16.43 -7.877 1 37.1 ? H191 K8W 305 A 1 HETATM 33 H H201 K8W . . . G 5 19.417 14.994 -4.776 1 33.96 ? H201 K8W 305 A 1 HETATM 34 H H202 K8W . . . G 5 20.147 14.058 -5.676 1 33.96 ? H202 K8W 305 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #