data_6RMP # _model_server_result.job_id qplFM66HHa1lfGQzGfKoBQ _model_server_result.datetime_utc '2024-11-23 07:11:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rmp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6RMP # _exptl.entry_id 6RMP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.65 _cell.angle_gamma 90 _cell.entry_id 6RMP _cell.length_a 42.405 _cell.length_b 41.547 _cell.length_c 72.075 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RMP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 99 A HIS 94 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 A NE2 HIS 101 A HIS 96 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc3 A ND1 HIS 124 A HIS 119 1_555 E ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc4 A O GLN 141 A GLN 137 1_555 B HG BE7 . A BE7 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 3.002 ? metalc ? metalc5 A O GLU 209 A GLU 205 1_555 B HG BE7 . A BE7 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.185 ? metalc ? metalc6 A SG CYS 210 A CYS 206 1_555 B HG BE7 . A BE7 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.384 ? metalc ? metalc7 B HG BE7 . A BE7 301 1_555 F O HOH . A HOH 499 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.989 ? metalc ? metalc8 D N2 47S . A 47S 303 1_555 E ZN ZN . A ZN 304 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc9 D O 47S . A 47S 303 1_555 E ZN ZN . A ZN 304 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.222 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 125 n n S C1 DMS sing 126 n n S C2 DMS sing 127 n n C1 H11 DMS sing 128 n n C1 H12 DMS sing 129 n n C1 H13 DMS sing 130 n n C2 H21 DMS sing 131 n n C2 H22 DMS sing 132 n n C2 H23 DMS sing 133 n n # _atom_sites.entry_id 6RMP _atom_sites.fract_transf_matrix[1][1] 0.023582 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006166 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BE7 A 1 301 2 BE7 BE7 . C 3 DMS A 1 302 1 DMS DMS . D 4 47S A 1 303 1 47S 47S . E 5 ZN A 1 304 1 ZN ZN . F 6 HOH A 1 401 246 HOH HOH . F 6 HOH A 2 402 254 HOH HOH . F 6 HOH A 3 403 192 HOH HOH . F 6 HOH A 4 404 205 HOH HOH . F 6 HOH A 5 405 76 HOH HOH . F 6 HOH A 6 406 234 HOH HOH . F 6 HOH A 7 407 95 HOH HOH . F 6 HOH A 8 408 262 HOH HOH . F 6 HOH A 9 409 271 HOH HOH . F 6 HOH A 10 410 10 HOH HOH . F 6 HOH A 11 411 143 HOH HOH . F 6 HOH A 12 412 148 HOH HOH . F 6 HOH A 13 413 67 HOH HOH . F 6 HOH A 14 414 104 HOH HOH . F 6 HOH A 15 415 105 HOH HOH . F 6 HOH A 16 416 77 HOH HOH . F 6 HOH A 17 417 235 HOH HOH . F 6 HOH A 18 418 159 HOH HOH . F 6 HOH A 19 419 99 HOH HOH . F 6 HOH A 20 420 48 HOH HOH . F 6 HOH A 21 421 211 HOH HOH . F 6 HOH A 22 422 58 HOH HOH . F 6 HOH A 23 423 28 HOH HOH . F 6 HOH A 24 424 3 HOH HOH . F 6 HOH A 25 425 207 HOH HOH . F 6 HOH A 26 426 248 HOH HOH . F 6 HOH A 27 427 15 HOH HOH . F 6 HOH A 28 428 98 HOH HOH . F 6 HOH A 29 429 37 HOH HOH . F 6 HOH A 30 430 241 HOH HOH . F 6 HOH A 31 431 265 HOH HOH . F 6 HOH A 32 432 101 HOH HOH . F 6 HOH A 33 433 22 HOH HOH . F 6 HOH A 34 434 50 HOH HOH . F 6 HOH A 35 435 117 HOH HOH . F 6 HOH A 36 436 26 HOH HOH . F 6 HOH A 37 437 186 HOH HOH . F 6 HOH A 38 438 9 HOH HOH . F 6 HOH A 39 439 66 HOH HOH . F 6 HOH A 40 440 25 HOH HOH . F 6 HOH A 41 441 31 HOH HOH . F 6 HOH A 42 442 141 HOH HOH . F 6 HOH A 43 443 47 HOH HOH . F 6 HOH A 44 444 184 HOH HOH . F 6 HOH A 45 445 113 HOH HOH . F 6 HOH A 46 446 34 HOH HOH . F 6 HOH A 47 447 111 HOH HOH . F 6 HOH A 48 448 79 HOH HOH . F 6 HOH A 49 449 72 HOH HOH . F 6 HOH A 50 450 242 HOH HOH . F 6 HOH A 51 451 43 HOH HOH . F 6 HOH A 52 452 18 HOH HOH . F 6 HOH A 53 453 44 HOH HOH . F 6 HOH A 54 454 146 HOH HOH . F 6 HOH A 55 455 69 HOH HOH . F 6 HOH A 56 456 84 HOH HOH . F 6 HOH A 57 457 102 HOH HOH . F 6 HOH A 58 458 196 HOH HOH . F 6 HOH A 59 459 163 HOH HOH . F 6 HOH A 60 460 201 HOH HOH . F 6 HOH A 61 461 268 HOH HOH . F 6 HOH A 62 462 260 HOH HOH . F 6 HOH A 63 463 129 HOH HOH . F 6 HOH A 64 464 13 HOH HOH . F 6 HOH A 65 465 2 HOH HOH . F 6 HOH A 66 466 89 HOH HOH . F 6 HOH A 67 467 244 HOH HOH . F 6 HOH A 68 468 134 HOH HOH . F 6 HOH A 69 469 60 HOH HOH . F 6 HOH A 70 470 109 HOH HOH . F 6 HOH A 71 471 42 HOH HOH . F 6 HOH A 72 472 29 HOH HOH . F 6 HOH A 73 473 255 HOH HOH . F 6 HOH A 74 474 64 HOH HOH . F 6 HOH A 75 475 108 HOH HOH . F 6 HOH A 76 476 24 HOH HOH . F 6 HOH A 77 477 75 HOH HOH . F 6 HOH A 78 478 17 HOH HOH . F 6 HOH A 79 479 61 HOH HOH . F 6 HOH A 80 480 27 HOH HOH . F 6 HOH A 81 481 32 HOH HOH . F 6 HOH A 82 482 130 HOH HOH . F 6 HOH A 83 483 147 HOH HOH . F 6 HOH A 84 484 12 HOH HOH . F 6 HOH A 85 485 96 HOH HOH . F 6 HOH A 86 486 30 HOH HOH . F 6 HOH A 87 487 5 HOH HOH . F 6 HOH A 88 488 128 HOH HOH . F 6 HOH A 89 489 100 HOH HOH . F 6 HOH A 90 490 197 HOH HOH . F 6 HOH A 91 491 145 HOH HOH . F 6 HOH A 92 492 185 HOH HOH . F 6 HOH A 93 493 38 HOH HOH . F 6 HOH A 94 494 245 HOH HOH . F 6 HOH A 95 495 238 HOH HOH . F 6 HOH A 96 496 83 HOH HOH . F 6 HOH A 97 497 149 HOH HOH . F 6 HOH A 98 498 156 HOH HOH . F 6 HOH A 99 499 114 HOH HOH . F 6 HOH A 100 500 36 HOH HOH . F 6 HOH A 101 501 16 HOH HOH . F 6 HOH A 102 502 204 HOH HOH . F 6 HOH A 103 503 200 HOH HOH . F 6 HOH A 104 504 49 HOH HOH . F 6 HOH A 105 505 71 HOH HOH . F 6 HOH A 106 506 152 HOH HOH . F 6 HOH A 107 507 239 HOH HOH . F 6 HOH A 108 508 153 HOH HOH . F 6 HOH A 109 509 4 HOH HOH . F 6 HOH A 110 510 19 HOH HOH . F 6 HOH A 111 511 87 HOH HOH . F 6 HOH A 112 512 92 HOH HOH . F 6 HOH A 113 513 112 HOH HOH . F 6 HOH A 114 514 8 HOH HOH . F 6 HOH A 115 515 103 HOH HOH . F 6 HOH A 116 516 23 HOH HOH . F 6 HOH A 117 517 6 HOH HOH . F 6 HOH A 118 518 94 HOH HOH . F 6 HOH A 119 519 137 HOH HOH . F 6 HOH A 120 520 81 HOH HOH . F 6 HOH A 121 521 33 HOH HOH . F 6 HOH A 122 522 183 HOH HOH . F 6 HOH A 123 523 46 HOH HOH . F 6 HOH A 124 524 51 HOH HOH . F 6 HOH A 125 525 203 HOH HOH . F 6 HOH A 126 526 74 HOH HOH . F 6 HOH A 127 527 190 HOH HOH . F 6 HOH A 128 528 65 HOH HOH . F 6 HOH A 129 529 199 HOH HOH . F 6 HOH A 130 530 63 HOH HOH . F 6 HOH A 131 531 216 HOH HOH . F 6 HOH A 132 532 41 HOH HOH . F 6 HOH A 133 533 267 HOH HOH . F 6 HOH A 134 534 54 HOH HOH . F 6 HOH A 135 535 35 HOH HOH . F 6 HOH A 136 536 56 HOH HOH . F 6 HOH A 137 537 264 HOH HOH . F 6 HOH A 138 538 259 HOH HOH . F 6 HOH A 139 539 224 HOH HOH . F 6 HOH A 140 540 218 HOH HOH . F 6 HOH A 141 541 240 HOH HOH . F 6 HOH A 142 542 144 HOH HOH . F 6 HOH A 143 543 57 HOH HOH . F 6 HOH A 144 544 39 HOH HOH . F 6 HOH A 145 545 40 HOH HOH . F 6 HOH A 146 546 55 HOH HOH . F 6 HOH A 147 547 151 HOH HOH . F 6 HOH A 148 548 20 HOH HOH . F 6 HOH A 149 549 123 HOH HOH . F 6 HOH A 150 550 115 HOH HOH . F 6 HOH A 151 551 11 HOH HOH . F 6 HOH A 152 552 73 HOH HOH . F 6 HOH A 153 553 82 HOH HOH . F 6 HOH A 154 554 90 HOH HOH . F 6 HOH A 155 555 70 HOH HOH . F 6 HOH A 156 556 227 HOH HOH . F 6 HOH A 157 557 52 HOH HOH . F 6 HOH A 158 558 247 HOH HOH . F 6 HOH A 159 559 91 HOH HOH . F 6 HOH A 160 560 165 HOH HOH . F 6 HOH A 161 561 122 HOH HOH . F 6 HOH A 162 562 139 HOH HOH . F 6 HOH A 163 563 93 HOH HOH . F 6 HOH A 164 564 154 HOH HOH . F 6 HOH A 165 565 135 HOH HOH . F 6 HOH A 166 566 193 HOH HOH . F 6 HOH A 167 567 124 HOH HOH . F 6 HOH A 168 568 121 HOH HOH . F 6 HOH A 169 569 222 HOH HOH . F 6 HOH A 170 570 229 HOH HOH . F 6 HOH A 171 571 88 HOH HOH . F 6 HOH A 172 572 85 HOH HOH . F 6 HOH A 173 573 62 HOH HOH . F 6 HOH A 174 574 232 HOH HOH . F 6 HOH A 175 575 180 HOH HOH . F 6 HOH A 176 576 188 HOH HOH . F 6 HOH A 177 577 179 HOH HOH . F 6 HOH A 178 578 256 HOH HOH . F 6 HOH A 179 579 177 HOH HOH . F 6 HOH A 180 580 106 HOH HOH . F 6 HOH A 181 581 142 HOH HOH . F 6 HOH A 182 582 210 HOH HOH . F 6 HOH A 183 583 233 HOH HOH . F 6 HOH A 184 584 80 HOH HOH . F 6 HOH A 185 585 138 HOH HOH . F 6 HOH A 186 586 225 HOH HOH . F 6 HOH A 187 587 221 HOH HOH . F 6 HOH A 188 588 78 HOH HOH . F 6 HOH A 189 589 160 HOH HOH . F 6 HOH A 190 590 176 HOH HOH . F 6 HOH A 191 591 45 HOH HOH . F 6 HOH A 192 592 223 HOH HOH . F 6 HOH A 193 593 140 HOH HOH . F 6 HOH A 194 594 133 HOH HOH . F 6 HOH A 195 595 158 HOH HOH . F 6 HOH A 196 596 250 HOH HOH . F 6 HOH A 197 597 157 HOH HOH . F 6 HOH A 198 598 171 HOH HOH . F 6 HOH A 199 599 263 HOH HOH . F 6 HOH A 200 600 97 HOH HOH . F 6 HOH A 201 601 178 HOH HOH . F 6 HOH A 202 602 59 HOH HOH . F 6 HOH A 203 603 53 HOH HOH . F 6 HOH A 204 604 125 HOH HOH . F 6 HOH A 205 605 214 HOH HOH . F 6 HOH A 206 606 208 HOH HOH . F 6 HOH A 207 607 243 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 1.268 -11.823 14.936 0.82 24.98 ? S DMS 302 A 1 HETATM 2 O O DMS . . . C 3 1.901 -13.139 14.637 0.82 26.86 ? O DMS 302 A 1 HETATM 3 C C1 DMS . . . C 3 1.556 -11.519 16.693 0.82 24.01 ? C1 DMS 302 A 1 HETATM 4 C C2 DMS . . . C 3 2.4 -10.551 14.307 0.82 24.77 ? C2 DMS 302 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #