data_6RMX # _model_server_result.job_id AycGZODnI6BUiJLVEvt_Cw _model_server_result.datetime_utc '2024-11-13 05:45:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rmx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6RMX # _exptl.entry_id 6RMX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.14 _cell.angle_gamma 90 _cell.entry_id 6RMX _cell.length_a 42.26 _cell.length_b 41.05 _cell.length_c 71.77 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 70 A SER 73 1_555 C NA NA . A NA 302 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 A NE2 HIS 91 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc3 A NE2 HIS 93 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc4 A ND1 HIS 116 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc5 A OG SER 216 A SER 220 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc6 B ZN ZN . A ZN 301 1_555 D N4 5DU . A 5DU 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc7 C NA NA . A NA 302 1_555 G O HOH . A HOH 424 1_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc8 C NA NA . A NA 302 1_555 G O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc9 C NA NA . A NA 302 1_555 G O HOH . A HOH 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc10 C NA NA . A NA 302 1_555 G O HOH . A HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id BEZ _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BEZ doub 116 n n C O2 BEZ sing 117 n n C C1 BEZ sing 118 n n O2 HO2 BEZ sing 119 n n C1 C2 BEZ doub 120 n y C1 C6 BEZ sing 121 n y C2 C3 BEZ sing 122 n y C2 H2 BEZ sing 123 n n C3 C4 BEZ doub 124 n y C3 H3 BEZ sing 125 n n C4 C5 BEZ sing 126 n y C4 H4 BEZ sing 127 n n C5 C6 BEZ doub 128 n y C5 H5 BEZ sing 129 n n C6 H6 BEZ sing 130 n n # _atom_sites.entry_id 6RMX _atom_sites.fract_transf_matrix[1][1] 0.023663 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005963 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 NA A 1 302 1 NA NA . D 4 5DU A 1 303 1 5DU V12 . E 5 DMS A 1 304 2 DMS DMS . F 6 BEZ A 1 305 1 BEZ BEZ . G 7 HOH A 1 401 107 HOH HOH . G 7 HOH A 2 402 39 HOH HOH . G 7 HOH A 3 403 191 HOH HOH . G 7 HOH A 4 404 48 HOH HOH . G 7 HOH A 5 405 136 HOH HOH . G 7 HOH A 6 406 19 HOH HOH . G 7 HOH A 7 407 98 HOH HOH . G 7 HOH A 8 408 35 HOH HOH . G 7 HOH A 9 409 216 HOH HOH . G 7 HOH A 10 410 124 HOH HOH . G 7 HOH A 11 411 80 HOH HOH . G 7 HOH A 12 412 135 HOH HOH . G 7 HOH A 13 413 150 HOH HOH . G 7 HOH A 14 414 88 HOH HOH . G 7 HOH A 15 415 73 HOH HOH . G 7 HOH A 16 416 177 HOH HOH . G 7 HOH A 17 417 51 HOH HOH . G 7 HOH A 18 418 186 HOH HOH . G 7 HOH A 19 419 96 HOH HOH . G 7 HOH A 20 420 86 HOH HOH . G 7 HOH A 21 421 56 HOH HOH . G 7 HOH A 22 422 132 HOH HOH . G 7 HOH A 23 423 217 HOH HOH . G 7 HOH A 24 424 29 HOH HOH . G 7 HOH A 25 425 34 HOH HOH . G 7 HOH A 26 426 193 HOH HOH . G 7 HOH A 27 427 83 HOH HOH . G 7 HOH A 28 428 23 HOH HOH . G 7 HOH A 29 429 84 HOH HOH . G 7 HOH A 30 430 161 HOH HOH . G 7 HOH A 31 431 167 HOH HOH . G 7 HOH A 32 432 62 HOH HOH . G 7 HOH A 33 433 125 HOH HOH . G 7 HOH A 34 434 99 HOH HOH . G 7 HOH A 35 435 42 HOH HOH . G 7 HOH A 36 436 162 HOH HOH . G 7 HOH A 37 437 40 HOH HOH . G 7 HOH A 38 438 15 HOH HOH . G 7 HOH A 39 439 69 HOH HOH . G 7 HOH A 40 440 114 HOH HOH . G 7 HOH A 41 441 10 HOH HOH . G 7 HOH A 42 442 215 HOH HOH . G 7 HOH A 43 443 60 HOH HOH . G 7 HOH A 44 444 95 HOH HOH . G 7 HOH A 45 445 43 HOH HOH . G 7 HOH A 46 446 12 HOH HOH . G 7 HOH A 47 447 14 HOH HOH . G 7 HOH A 48 448 2 HOH HOH . G 7 HOH A 49 449 90 HOH HOH . G 7 HOH A 50 450 92 HOH HOH . G 7 HOH A 51 451 3 HOH HOH . G 7 HOH A 52 452 22 HOH HOH . G 7 HOH A 53 453 6 HOH HOH . G 7 HOH A 54 454 77 HOH HOH . G 7 HOH A 55 455 85 HOH HOH . G 7 HOH A 56 456 127 HOH HOH . G 7 HOH A 57 457 115 HOH HOH . G 7 HOH A 58 458 147 HOH HOH . G 7 HOH A 59 459 118 HOH HOH . G 7 HOH A 60 460 27 HOH HOH . G 7 HOH A 61 461 122 HOH HOH . G 7 HOH A 62 462 8 HOH HOH . G 7 HOH A 63 463 11 HOH HOH . G 7 HOH A 64 464 67 HOH HOH . G 7 HOH A 65 465 143 HOH HOH . G 7 HOH A 66 466 137 HOH HOH . G 7 HOH A 67 467 45 HOH HOH . G 7 HOH A 68 468 131 HOH HOH . G 7 HOH A 69 469 1 HOH HOH . G 7 HOH A 70 470 146 HOH HOH . G 7 HOH A 71 471 175 HOH HOH . G 7 HOH A 72 472 208 HOH HOH . G 7 HOH A 73 473 47 HOH HOH . G 7 HOH A 74 474 25 HOH HOH . G 7 HOH A 75 475 195 HOH HOH . G 7 HOH A 76 476 202 HOH HOH . G 7 HOH A 77 477 18 HOH HOH . G 7 HOH A 78 478 93 HOH HOH . G 7 HOH A 79 479 9 HOH HOH . G 7 HOH A 80 480 212 HOH HOH . G 7 HOH A 81 481 117 HOH HOH . G 7 HOH A 82 482 59 HOH HOH . G 7 HOH A 83 483 109 HOH HOH . G 7 HOH A 84 484 104 HOH HOH . G 7 HOH A 85 485 120 HOH HOH . G 7 HOH A 86 486 65 HOH HOH . G 7 HOH A 87 487 110 HOH HOH . G 7 HOH A 88 488 192 HOH HOH . G 7 HOH A 89 489 179 HOH HOH . G 7 HOH A 90 490 54 HOH HOH . G 7 HOH A 91 491 159 HOH HOH . G 7 HOH A 92 492 70 HOH HOH . G 7 HOH A 93 493 4 HOH HOH . G 7 HOH A 94 494 123 HOH HOH . G 7 HOH A 95 495 28 HOH HOH . G 7 HOH A 96 496 176 HOH HOH . G 7 HOH A 97 497 140 HOH HOH . G 7 HOH A 98 498 30 HOH HOH . G 7 HOH A 99 499 128 HOH HOH . G 7 HOH A 100 500 7 HOH HOH . G 7 HOH A 101 501 72 HOH HOH . G 7 HOH A 102 502 87 HOH HOH . G 7 HOH A 103 503 209 HOH HOH . G 7 HOH A 104 504 13 HOH HOH . G 7 HOH A 105 505 38 HOH HOH . G 7 HOH A 106 506 46 HOH HOH . G 7 HOH A 107 507 53 HOH HOH . G 7 HOH A 108 508 94 HOH HOH . G 7 HOH A 109 509 197 HOH HOH . G 7 HOH A 110 510 91 HOH HOH . G 7 HOH A 111 511 116 HOH HOH . G 7 HOH A 112 512 204 HOH HOH . G 7 HOH A 113 513 203 HOH HOH . G 7 HOH A 114 514 133 HOH HOH . G 7 HOH A 115 515 41 HOH HOH . G 7 HOH A 116 516 74 HOH HOH . G 7 HOH A 117 517 44 HOH HOH . G 7 HOH A 118 518 108 HOH HOH . G 7 HOH A 119 519 173 HOH HOH . G 7 HOH A 120 520 89 HOH HOH . G 7 HOH A 121 521 111 HOH HOH . G 7 HOH A 122 522 5 HOH HOH . G 7 HOH A 123 523 160 HOH HOH . G 7 HOH A 124 524 71 HOH HOH . G 7 HOH A 125 525 164 HOH HOH . G 7 HOH A 126 526 153 HOH HOH . G 7 HOH A 127 527 198 HOH HOH . G 7 HOH A 128 528 100 HOH HOH . G 7 HOH A 129 529 183 HOH HOH . G 7 HOH A 130 530 190 HOH HOH . G 7 HOH A 131 531 50 HOH HOH . G 7 HOH A 132 532 121 HOH HOH . G 7 HOH A 133 533 33 HOH HOH . G 7 HOH A 134 534 130 HOH HOH . G 7 HOH A 135 535 63 HOH HOH . G 7 HOH A 136 536 199 HOH HOH . G 7 HOH A 137 537 76 HOH HOH . G 7 HOH A 138 538 17 HOH HOH . G 7 HOH A 139 539 55 HOH HOH . G 7 HOH A 140 540 81 HOH HOH . G 7 HOH A 141 541 32 HOH HOH . G 7 HOH A 142 542 52 HOH HOH . G 7 HOH A 143 543 101 HOH HOH . G 7 HOH A 144 544 119 HOH HOH . G 7 HOH A 145 545 58 HOH HOH . G 7 HOH A 146 546 36 HOH HOH . G 7 HOH A 147 547 155 HOH HOH . G 7 HOH A 148 548 64 HOH HOH . G 7 HOH A 149 549 184 HOH HOH . G 7 HOH A 150 550 174 HOH HOH . G 7 HOH A 151 551 152 HOH HOH . G 7 HOH A 152 552 166 HOH HOH . G 7 HOH A 153 553 105 HOH HOH . G 7 HOH A 154 554 134 HOH HOH . G 7 HOH A 155 555 26 HOH HOH . G 7 HOH A 156 556 31 HOH HOH . G 7 HOH A 157 557 141 HOH HOH . G 7 HOH A 158 558 37 HOH HOH . G 7 HOH A 159 559 142 HOH HOH . G 7 HOH A 160 560 49 HOH HOH . G 7 HOH A 161 561 82 HOH HOH . G 7 HOH A 162 562 201 HOH HOH . G 7 HOH A 163 563 20 HOH HOH . G 7 HOH A 164 564 158 HOH HOH . G 7 HOH A 165 565 129 HOH HOH . G 7 HOH A 166 566 102 HOH HOH . G 7 HOH A 167 567 21 HOH HOH . G 7 HOH A 168 568 168 HOH HOH . G 7 HOH A 169 569 61 HOH HOH . G 7 HOH A 170 570 148 HOH HOH . G 7 HOH A 171 571 16 HOH HOH . G 7 HOH A 172 572 211 HOH HOH . G 7 HOH A 173 573 182 HOH HOH . G 7 HOH A 174 574 79 HOH HOH . G 7 HOH A 175 575 97 HOH HOH . G 7 HOH A 176 576 181 HOH HOH . G 7 HOH A 177 577 106 HOH HOH . G 7 HOH A 178 578 57 HOH HOH . G 7 HOH A 179 579 24 HOH HOH . G 7 HOH A 180 580 194 HOH HOH . G 7 HOH A 181 581 126 HOH HOH . G 7 HOH A 182 582 170 HOH HOH . G 7 HOH A 183 583 66 HOH HOH . G 7 HOH A 184 584 112 HOH HOH . G 7 HOH A 185 585 213 HOH HOH . G 7 HOH A 186 586 138 HOH HOH . G 7 HOH A 187 587 145 HOH HOH . G 7 HOH A 188 588 185 HOH HOH . G 7 HOH A 189 589 165 HOH HOH . G 7 HOH A 190 590 210 HOH HOH . G 7 HOH A 191 591 196 HOH HOH . G 7 HOH A 192 592 214 HOH HOH . G 7 HOH A 193 593 157 HOH HOH . G 7 HOH A 194 594 206 HOH HOH . G 7 HOH A 195 595 78 HOH HOH . G 7 HOH A 196 596 178 HOH HOH . G 7 HOH A 197 597 180 HOH HOH . G 7 HOH A 198 598 188 HOH HOH . G 7 HOH A 199 599 156 HOH HOH . G 7 HOH A 200 600 187 HOH HOH . G 7 HOH A 201 601 68 HOH HOH . G 7 HOH A 202 602 144 HOH HOH . G 7 HOH A 203 603 171 HOH HOH . G 7 HOH A 204 604 200 HOH HOH . G 7 HOH A 205 605 151 HOH HOH . G 7 HOH A 206 606 189 HOH HOH . G 7 HOH A 207 607 113 HOH HOH . G 7 HOH A 208 608 163 HOH HOH . G 7 HOH A 209 609 75 HOH HOH . G 7 HOH A 210 610 149 HOH HOH . G 7 HOH A 211 611 205 HOH HOH . G 7 HOH A 212 612 154 HOH HOH . G 7 HOH A 213 613 172 HOH HOH . G 7 HOH A 214 614 139 HOH HOH . G 7 HOH A 215 615 207 HOH HOH . G 7 HOH A 216 616 103 HOH HOH . G 7 HOH A 217 617 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BEZ . . . F 6 -10.663 -11.856 -3.73 1 35.27 ? C BEZ 305 A 1 HETATM 2 O O1 BEZ . . . F 6 -10.461 -12.87 -4.453 1 41.79 ? O1 BEZ 305 A 1 HETATM 3 O O2 BEZ . . . F 6 -11.779 -11.499 -3.3 1 35.36 ? O2 BEZ 305 A 1 HETATM 4 C C1 BEZ . . . F 6 -9.469 -11.018 -3.364 1 34.01 ? C1 BEZ 305 A 1 HETATM 5 C C2 BEZ . . . F 6 -9.423 -10.349 -2.147 1 27.32 ? C2 BEZ 305 A 1 HETATM 6 C C3 BEZ . . . F 6 -8.328 -9.566 -1.826 1 29.17 ? C3 BEZ 305 A 1 HETATM 7 C C4 BEZ . . . F 6 -7.26 -9.467 -2.691 1 30.91 ? C4 BEZ 305 A 1 HETATM 8 C C5 BEZ . . . F 6 -7.301 -10.127 -3.905 1 28.76 ? C5 BEZ 305 A 1 HETATM 9 C C6 BEZ . . . F 6 -8.395 -10.909 -4.239 1 31.1 ? C6 BEZ 305 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #