data_6RNR # _model_server_result.job_id P70pJuqBOPoGwRIKBwlTNg _model_server_result.datetime_utc '2025-02-17 04:18:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rnr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6RNR # _exptl.entry_id 6RNR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 220.175 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(trifluoromethyl)-9~{H}-purine-6-thiol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RNR _cell.length_a 91.813 _cell.length_b 91.813 _cell.length_c 141.617 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RNR _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 246 A CYS 245 1_555 A SG CYS 266 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 B O3' DT 6 D DT 6 1_555 B P 3DR 7 D 3DR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale2 B O3' 3DR 7 D 3DR 7 1_555 B P DT 8 D DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? hydrog WATSON-CRICK hydrog1 B N3 DT 2 D DT 2 1_555 C N1 DA 14 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B O4 DT 2 D DT 2 1_555 C N6 DA 14 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 DC 3 D DC 3 1_555 C N1 DG 13 E DG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N4 DC 3 D DC 3 1_555 C O6 DG 13 E DG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O2 DC 3 D DC 3 1_555 C N2 DG 13 E DG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DT 4 D DT 4 1_555 C N1 DA 12 E DA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O4 DT 4 D DT 4 1_555 C N6 DA 12 E DA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DT 5 D DT 5 1_555 C N1 DA 11 E DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 DT 5 D DT 5 1_555 C N6 DA 11 E DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 6 D DT 6 1_555 C N1 DA 10 E DA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 6 D DT 6 1_555 C N6 DA 10 E DA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DT 8 D DT 8 1_555 C N1 DA 8 E DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O4 DT 8 D DT 8 1_555 C N6 DA 8 E DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DT 9 D DT 9 1_555 C N1 DA 7 E DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O4 DT 9 D DT 9 1_555 C N6 DA 7 E DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DT 10 D DT 10 1_555 C N1 DA 6 E DA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O4 DT 10 D DT 10 1_555 C N6 DA 6 E DA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DC 11 D DC 11 1_555 C N1 DG 5 E DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N4 DC 11 D DC 11 1_555 C O6 DG 5 E DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O2 DC 11 D DC 11 1_555 C N2 DG 5 E DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 DT 12 D DT 12 1_555 C N1 DA 4 E DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O4 DT 12 D DT 12 1_555 C N6 DA 4 E DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N3 DC 13 D DC 13 1_555 C N1 DG 3 E DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N4 DC 13 D DC 13 1_555 C O6 DG 3 E DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O2 DC 13 D DC 13 1_555 C N2 DG 3 E DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 DG 14 D DG 14 1_555 C N3 DC 2 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N2 DG 14 D DG 14 1_555 C O2 DC 2 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O6 DG 14 D DG 14 1_555 C N4 DC 2 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H3 F3 N4 S' _chem_comp.formula_weight 220.175 _chem_comp.id KBN _chem_comp.mon_nstd_flag . _chem_comp.name 2-(trifluoromethyl)-9~{H}-purine-6-thiol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S08 C07 KBN sing 358 n n F01 C02 KBN sing 359 n n N06 C07 KBN doub 360 n y N06 C05 KBN sing 361 n y C07 C09 KBN sing 362 n y F04 C02 KBN sing 363 n n C02 C05 KBN sing 364 n n C02 F03 KBN sing 365 n n C05 N14 KBN doub 366 n y C09 N10 KBN sing 367 n y C09 C13 KBN doub 368 n y N10 C11 KBN doub 369 n y N14 C13 KBN sing 370 n y C13 N12 KBN sing 371 n y C11 N12 KBN sing 372 n y N12 H1 KBN sing 373 n n C11 H4 KBN sing 374 n n S08 H2 KBN sing 375 n n # _atom_sites.entry_id 6RNR _atom_sites.fract_transf_matrix[1][1] 0.010892 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 KBN A 1 301 1 KBN LIG . E 5 GOL A 1 302 1 GOL GOL . F 6 HOH A 1 401 88 HOH HOH . F 6 HOH A 2 402 109 HOH HOH . F 6 HOH A 3 403 57 HOH HOH . F 6 HOH A 4 404 111 HOH HOH . F 6 HOH A 5 405 87 HOH HOH . F 6 HOH A 6 406 74 HOH HOH . F 6 HOH A 7 407 108 HOH HOH . F 6 HOH A 8 408 81 HOH HOH . F 6 HOH A 9 409 115 HOH HOH . F 6 HOH A 10 410 83 HOH HOH . F 6 HOH A 11 411 32 HOH HOH . F 6 HOH A 12 412 37 HOH HOH . F 6 HOH A 13 413 21 HOH HOH . F 6 HOH A 14 414 56 HOH HOH . F 6 HOH A 15 415 29 HOH HOH . F 6 HOH A 16 416 7 HOH HOH . F 6 HOH A 17 417 55 HOH HOH . F 6 HOH A 18 418 1 HOH HOH . F 6 HOH A 19 419 10 HOH HOH . F 6 HOH A 20 420 116 HOH HOH . F 6 HOH A 21 421 76 HOH HOH . F 6 HOH A 22 422 72 HOH HOH . F 6 HOH A 23 423 68 HOH HOH . F 6 HOH A 24 424 78 HOH HOH . F 6 HOH A 25 425 4 HOH HOH . F 6 HOH A 26 426 23 HOH HOH . F 6 HOH A 27 427 6 HOH HOH . F 6 HOH A 28 428 43 HOH HOH . F 6 HOH A 29 429 100 HOH HOH . F 6 HOH A 30 430 48 HOH HOH . F 6 HOH A 31 431 99 HOH HOH . F 6 HOH A 32 432 64 HOH HOH . F 6 HOH A 33 433 86 HOH HOH . F 6 HOH A 34 434 15 HOH HOH . F 6 HOH A 35 435 8 HOH HOH . F 6 HOH A 36 436 70 HOH HOH . F 6 HOH A 37 437 63 HOH HOH . F 6 HOH A 38 438 17 HOH HOH . F 6 HOH A 39 439 35 HOH HOH . F 6 HOH A 40 440 30 HOH HOH . F 6 HOH A 41 441 5 HOH HOH . F 6 HOH A 42 442 38 HOH HOH . F 6 HOH A 43 443 75 HOH HOH . F 6 HOH A 44 444 58 HOH HOH . F 6 HOH A 45 445 112 HOH HOH . F 6 HOH A 46 446 79 HOH HOH . F 6 HOH A 47 447 20 HOH HOH . F 6 HOH A 48 448 19 HOH HOH . F 6 HOH A 49 449 47 HOH HOH . F 6 HOH A 50 450 54 HOH HOH . F 6 HOH A 51 451 59 HOH HOH . F 6 HOH A 52 452 90 HOH HOH . F 6 HOH A 53 453 69 HOH HOH . F 6 HOH A 54 454 66 HOH HOH . F 6 HOH A 55 455 31 HOH HOH . F 6 HOH A 56 456 60 HOH HOH . F 6 HOH A 57 457 65 HOH HOH . F 6 HOH A 58 458 24 HOH HOH . F 6 HOH A 59 459 3 HOH HOH . F 6 HOH A 60 460 36 HOH HOH . F 6 HOH A 61 461 103 HOH HOH . F 6 HOH A 62 462 42 HOH HOH . F 6 HOH A 63 463 25 HOH HOH . F 6 HOH A 64 464 104 HOH HOH . F 6 HOH A 65 465 50 HOH HOH . F 6 HOH A 66 466 33 HOH HOH . F 6 HOH A 67 467 67 HOH HOH . F 6 HOH A 68 468 91 HOH HOH . F 6 HOH A 69 469 13 HOH HOH . F 6 HOH A 70 470 120 HOH HOH . F 6 HOH A 71 471 26 HOH HOH . F 6 HOH A 72 472 9 HOH HOH . F 6 HOH A 73 473 11 HOH HOH . F 6 HOH A 74 474 101 HOH HOH . F 6 HOH A 75 475 45 HOH HOH . F 6 HOH A 76 476 12 HOH HOH . F 6 HOH A 77 477 117 HOH HOH . F 6 HOH A 78 478 22 HOH HOH . F 6 HOH A 79 479 27 HOH HOH . F 6 HOH A 80 480 95 HOH HOH . F 6 HOH A 81 481 62 HOH HOH . F 6 HOH A 82 482 46 HOH HOH . F 6 HOH A 83 483 77 HOH HOH . F 6 HOH A 84 484 73 HOH HOH . F 6 HOH A 85 485 85 HOH HOH . F 6 HOH A 86 486 84 HOH HOH . F 6 HOH A 87 487 102 HOH HOH . F 6 HOH A 88 488 28 HOH HOH . F 6 HOH A 89 489 97 HOH HOH . F 6 HOH A 90 490 61 HOH HOH . F 6 HOH A 91 491 40 HOH HOH . F 6 HOH A 92 492 96 HOH HOH . F 6 HOH A 93 493 93 HOH HOH . F 6 HOH A 94 494 92 HOH HOH . F 6 HOH A 95 495 44 HOH HOH . F 6 HOH A 96 496 106 HOH HOH . F 6 HOH A 97 497 113 HOH HOH . F 6 HOH A 98 498 105 HOH HOH . F 6 HOH A 99 499 118 HOH HOH . F 6 HOH A 100 500 82 HOH HOH . F 6 HOH A 101 501 107 HOH HOH . F 6 HOH A 102 502 71 HOH HOH . F 6 HOH A 103 503 98 HOH HOH . G 6 HOH D 1 101 41 HOH HOH . G 6 HOH D 2 102 110 HOH HOH . G 6 HOH D 3 103 94 HOH HOH . G 6 HOH D 4 104 119 HOH HOH . G 6 HOH D 5 105 51 HOH HOH . G 6 HOH D 6 106 114 HOH HOH . G 6 HOH D 7 107 52 HOH HOH . G 6 HOH D 8 108 34 HOH HOH . G 6 HOH D 9 109 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N12 KBN . . . D 4 -23.052 4.197 22.059 1 63.26 ? N12 KBN 301 A 1 HETATM 2 C C13 KBN . . . D 4 -23.386 2.947 21.438 1 57.66 ? C13 KBN 301 A 1 HETATM 3 F F01 KBN . . . D 4 -26.009 -0.469 19.606 1 54.46 ? F01 KBN 301 A 1 HETATM 4 C C02 KBN . . . D 4 -26.109 0.326 20.669 1 69.18 ? C02 KBN 301 A 1 HETATM 5 F F03 KBN . . . D 4 -26.371 -0.381 21.776 1 76.42 ? F03 KBN 301 A 1 HETATM 6 F F04 KBN . . . D 4 -27.073 1.221 20.449 1 77.17 ? F04 KBN 301 A 1 HETATM 7 C C05 KBN . . . D 4 -24.795 1.031 20.747 1 57.11 ? C05 KBN 301 A 1 HETATM 8 N N06 KBN . . . D 4 -23.623 0.429 20.087 1 53.82 ? N06 KBN 301 A 1 HETATM 9 C C07 KBN . . . D 4 -22.326 1.066 20.109 1 57.98 ? C07 KBN 301 A 1 HETATM 10 S S08 KBN . . . D 4 -21.021 0.335 19.332 1 48.96 ? S08 KBN 301 A 1 HETATM 11 C C09 KBN . . . D 4 -22.224 2.365 20.83 1 58.46 ? C09 KBN 301 A 1 HETATM 12 N N10 KBN . . . D 4 -21.149 3.295 21.043 1 57.98 ? N10 KBN 301 A 1 HETATM 13 C C11 KBN . . . D 4 -21.65 4.418 21.813 1 58.08 ? C11 KBN 301 A 1 HETATM 14 N N14 KBN . . . D 4 -24.687 2.309 21.427 1 48.48 ? N14 KBN 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #