data_6ROH # _model_server_result.job_id JtktUdqOTzINGPrdc8leEA _model_server_result.datetime_utc '2024-11-21 14:27:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6roh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2101}' # _entry.id 6ROH # _exptl.entry_id 6ROH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 455.437 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ROH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ROH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 4 3 BMA BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG D 1311 NAG 3 n C NAG 2 B 2 NAG D 1312 NAG 4 n D NAG 1 D 1 NAG D 1341 NAG 4 n D NAG 2 D 2 NAG D 1342 NAG 4 n D BMA 3 D 3 BMA D 1343 BMA 4 n D BMA 4 D 4 BMA D 1344 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 80 C CYS 80 1_555 B SG CYS 123 C CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 176 C CYS 176 1_555 B SG CYS 190 C CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A C SER 559 A SER 559 1_555 A N BFD 560 A BFD 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C BFD 560 A BFD 560 1_555 A N LYS 561 A LYS 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B ND2 ASN 199 C ASN 199 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale4 B ND2 ASN 216 C ASN 216 1_555 G C1 NAG . C NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 B ND2 ASN 288 C ASN 288 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale9 D O3 BMA . D BMA 3 1_555 D C1 BMA . D BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A OD2 BFD 560 A BFD 560 1_555 F MG MG . A MG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc2 A O THR 562 A THR 562 1_555 F MG MG . A MG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc3 A OD1 ASP 954 A ASP 954 1_555 F MG MG . A MG 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc4 F MG MG . A MG 2102 1_555 H O HOH . A HOH 2201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? metalc ? metalc5 F MG MG . A MG 2102 1_555 H O HOH . A HOH 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? # _chem_comp.formula 'C18 H34 N O10 P' _chem_comp.formula_weight 455.437 _chem_comp.id PSF _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PHOSPHATIDYLSERINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 P PSF sing 349 n n O2 C2 PSF sing 350 n n O1 P PSF sing 351 n n O1 CB PSF sing 352 n n P O4 PSF doub 353 n n P O3 PSF sing 354 n n O3 HO3 PSF sing 355 n n C2 C3 PSF sing 356 n n C2 H21 PSF sing 357 n n C2 H22 PSF sing 358 n n C3 O11 PSF sing 359 n n C3 C4 PSF sing 360 n n C3 H31 PSF sing 361 n n O11 C1 PSF sing 362 n n O12 C1 PSF doub 363 n n C1 C13 PSF sing 364 n n C4 O52 PSF sing 365 n n C4 H41 PSF sing 366 n n C4 H42 PSF sing 367 n n C5 O51 PSF doub 368 n n C5 O52 PSF sing 369 n n C5 C6 PSF sing 370 n n C6 C7 PSF sing 371 n n C6 H61 PSF sing 372 n n C6 H62 PSF sing 373 n n C7 C8 PSF sing 374 n n C7 H71 PSF sing 375 n n C7 H72 PSF sing 376 n n C13 C14 PSF sing 377 n n C13 H131 PSF sing 378 n n C13 H132 PSF sing 379 n n C14 C15 PSF sing 380 n n C14 H141 PSF sing 381 n n C14 H142 PSF sing 382 n n C15 C16 PSF sing 383 n n C15 H151 PSF sing 384 n n C15 H152 PSF sing 385 n n N CA PSF sing 386 n n N H1 PSF sing 387 n n N H2 PSF sing 388 n n CA CB PSF sing 389 n n CA C PSF sing 390 n n CA HA PSF sing 391 n n CB HB1 PSF sing 392 n n CB HB2 PSF sing 393 n n C OT1 PSF doub 394 n n C OT2 PSF sing 395 n n OT2 HXT PSF sing 396 n n C8 C9 PSF sing 397 n n C8 H81 PSF sing 398 n n C8 H82 PSF sing 399 n n C9 C10 PSF sing 400 n n C9 H91 PSF sing 401 n n C9 H92 PSF sing 402 n n C10 H101 PSF sing 403 n n C10 H102 PSF sing 404 n n C10 H103 PSF sing 405 n n C16 C17 PSF sing 406 n n C16 H161 PSF sing 407 n n C16 H162 PSF sing 408 n n C17 H171 PSF sing 409 n n C17 H172 PSF sing 410 n n C17 H173 PSF sing 411 n n # _atom_sites.entry_id 6ROH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PSF A 1 2101 2101 PSF PSF . F 6 MG A 1 2102 1996 MG MG . G 7 NAG C 1 503 1321 NAG NAG . H 8 HOH A 1 2201 1999 HOH HOH . H 8 HOH A 2 2202 2000 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 PSF . . . E 5 140.018 155.139 132.081 1 68.38 ? O2 PSF 2101 A 1 HETATM 2 O O1 PSF . . . E 5 141.27 153.69 133.681 1 68.38 ? O1 PSF 2101 A 1 HETATM 3 P P PSF . . . E 5 140.914 153.693 132.063 1 68.38 ? P PSF 2101 A 1 HETATM 4 O O4 PSF . . . E 5 140 152.54 131.743 1 68.38 ? O4 PSF 2101 A 1 HETATM 5 O O3 PSF . . . E 5 142.157 154.017 131.33 1 68.38 ? O3 PSF 2101 A 1 HETATM 6 C C2 PSF . . . E 5 138.649 155.043 131.924 1 68.38 ? C2 PSF 2101 A 1 HETATM 7 C C3 PSF . . . E 5 138.295 155.37 130.452 1 68.38 ? C3 PSF 2101 A 1 HETATM 8 O O11 PSF . . . E 5 138.036 156.749 130.335 1 68.38 ? O11 PSF 2101 A 1 HETATM 9 O O12 PSF . . . E 5 140.171 157.166 129.774 1 68.38 ? O12 PSF 2101 A 1 HETATM 10 C C1 PSF . . . E 5 139.007 157.491 129.75 1 68.38 ? C1 PSF 2101 A 1 HETATM 11 C C4 PSF . . . E 5 137.023 154.617 130.001 1 68.38 ? C4 PSF 2101 A 1 HETATM 12 C C5 PSF . . . E 5 137.167 154.088 127.679 1 68.38 ? C5 PSF 2101 A 1 HETATM 13 O O51 PSF . . . E 5 138.086 153.311 127.838 1 68.38 ? O51 PSF 2101 A 1 HETATM 14 O O52 PSF . . . E 5 136.774 154.955 128.637 1 68.38 ? O52 PSF 2101 A 1 HETATM 15 C C6 PSF . . . E 5 136.331 154.224 126.445 1 68.38 ? C6 PSF 2101 A 1 HETATM 16 C C7 PSF . . . E 5 136.796 153.31 125.329 1 68.38 ? C7 PSF 2101 A 1 HETATM 17 C C13 PSF . . . E 5 138.441 158.708 129.099 1 68.38 ? C13 PSF 2101 A 1 HETATM 18 C C14 PSF . . . E 5 139.229 159.132 127.868 1 68.38 ? C14 PSF 2101 A 1 HETATM 19 C C15 PSF . . . E 5 138.405 158.98 126.597 1 68.38 ? C15 PSF 2101 A 1 HETATM 20 N N PSF . . . E 5 141.426 155.738 136.572 1 68.38 ? N PSF 2101 A 1 HETATM 21 C CA PSF . . . E 5 142.012 154.67 135.749 1 68.38 ? CA PSF 2101 A 1 HETATM 22 C CB PSF . . . E 5 141.559 154.894 134.305 1 68.38 ? CB PSF 2101 A 1 HETATM 23 C C PSF . . . E 5 143.554 154.489 135.742 1 68.38 ? C PSF 2101 A 1 HETATM 24 O OT1 PSF . . . E 5 144.052 153.731 134.848 1 68.38 ? OT1 PSF 2101 A 1 HETATM 25 O OT2 PSF . . . E 5 144.204 155.088 136.602 1 68.38 ? OT2 PSF 2101 A 1 HETATM 26 C C8 PSF . . . E 5 137.81 154.011 124.437 1 68.38 ? C8 PSF 2101 A 1 HETATM 27 C C9 PSF . . . E 5 137.116 154.659 123.246 1 68.38 ? C9 PSF 2101 A 1 HETATM 28 C C10 PSF . . . E 5 138.121 155.255 122.282 1 68.38 ? C10 PSF 2101 A 1 HETATM 29 C C16 PSF . . . E 5 139.199 159.453 125.389 1 68.38 ? C16 PSF 2101 A 1 HETATM 30 C C17 PSF . . . E 5 138.44 159.199 124.102 1 68.38 ? C17 PSF 2101 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #