data_6ROP
#
_model_server_result.job_id            6oHn2ZNvUiYYhE2kWAavBQ 
_model_server_result.datetime_utc      '2025-08-31 17:19:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rop 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":901}' 
#
_entry.id    6ROP 
#
_exptl.entry_id    6ROP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.211 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OCTANOIC ACID (CAPRYLIC ACID)' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ROP 
_cell.length_a            147.44 
_cell.length_b            354.11 
_cell.length_c            218.58 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ROP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H,I,J 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 161 A CYS 161 1_555 E C1 OCA . A OCA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.647 ? 
covale ? covale2 B SG CYS 161 B CYS 161 1_555 F C1 OCA . B OCA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.656 ? 
covale ? covale3 C SG CYS 161 C CYS 161 1_555 G C1 OCA . C OCA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? 
covale ? covale4 D SG CYS 161 D CYS 161 1_555 H C1 OCA . D OCA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.66 ? 
covale ? covale5 D OG SER 581 D SER 581 1_555 I C1 OCA . D OCA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? 
#
_chem_comp.formula           'C8 H16 O2' 
_chem_comp.formula_weight    144.211 
_chem_comp.id                OCA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OCTANOIC ACID (CAPRYLIC ACID)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OCA sing 344 n n 
C1 O1 OCA doub 345 n n 
C1 O2 OCA sing 346 n n 
C2 C3 OCA sing 347 n n 
C2 H21 OCA sing 348 n n 
C2 H22 OCA sing 349 n n 
C3 C4 OCA sing 350 n n 
C3 H31 OCA sing 351 n n 
C3 H32 OCA sing 352 n n 
C4 C5 OCA sing 353 n n 
C4 H41 OCA sing 354 n n 
C4 H42 OCA sing 355 n n 
C5 C6 OCA sing 356 n n 
C5 H51 OCA sing 357 n n 
C5 H52 OCA sing 358 n n 
C6 C7 OCA sing 359 n n 
C6 H61 OCA sing 360 n n 
C6 H62 OCA sing 361 n n 
C7 C8 OCA sing 362 n n 
C7 H71 OCA sing 363 n n 
C7 H72 OCA sing 364 n n 
C8 H81 OCA sing 365 n n 
C8 H82 OCA sing 366 n n 
C8 H83 OCA sing 367 n n 
O2 HO2 OCA sing 368 n n 
#
_atom_sites.entry_id                     6ROP 
_atom_sites.fract_transf_matrix[1][1]    0.006782 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002824 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004575 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 OCA A 1 901 905 OCA OCA . 
F 2 OCA B 1 901 905 OCA OCA . 
G 2 OCA C 1 901 905 OCA OCA . 
H 2 OCA D 1 901 905 OCA OCA . 
I 2 OCA D 1 902 906 OCA OCA . 
J 3 CO8 D 1 903 903 CO8 CO8 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OCA . . . F 2 -4.73 19.044 3.12 1 67.56 ? C1 OCA 901 B 1 
HETATM 2 C C2 OCA . . . F 2 -4.048 17.844 2.472 1 74.77 ? C2 OCA 901 B 1 
HETATM 3 C C3 OCA . . . F 2 -2.774 18.131 1.687 1 77.51 ? C3 OCA 901 B 1 
HETATM 4 C C4 OCA . . . F 2 -3.035 18.439 0.218 1 77.98 ? C4 OCA 901 B 1 
HETATM 5 C C5 OCA . . . F 2 -1.823 18.448 -0.717 1 80.11 ? C5 OCA 901 B 1 
HETATM 6 C C6 OCA . . . F 2 -2.18 18.125 -2.172 1 80.6 ? C6 OCA 901 B 1 
HETATM 7 C C7 OCA . . . F 2 -1.193 18.498 -3.25 1 89.64 ? C7 OCA 901 B 1 
HETATM 8 C C8 OCA . . . F 2 0.235 17.999 -3.041 1 95.51 ? C8 OCA 901 B 1 
HETATM 9 O O1 OCA . . . F 2 -4.317 19.459 4.212 1 67.23 ? O1 OCA 901 B 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           370 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#