data_6ROP
#
_model_server_result.job_id            MzhzMjsobUZ4MV_VNZnBfA 
_model_server_result.datetime_utc      '2025-08-31 21:38:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rop 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":903}' 
#
_entry.id    6ROP 
#
_exptl.entry_id    6ROP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              893.73 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OCTANOYL-COENZYME A' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6ROP 
_cell.length_a            147.44 
_cell.length_b            354.11 
_cell.length_c            218.58 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6ROP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H,I,J 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 161 A CYS 161 1_555 E C1 OCA . A OCA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.647 ? 
covale ? covale2 B SG CYS 161 B CYS 161 1_555 F C1 OCA . B OCA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.656 ? 
covale ? covale3 C SG CYS 161 C CYS 161 1_555 G C1 OCA . C OCA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? 
covale ? covale4 D SG CYS 161 D CYS 161 1_555 H C1 OCA . D OCA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.66 ? 
covale ? covale5 D OG SER 581 D SER 581 1_555 I C1 OCA . D OCA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? 
#
_chem_comp.formula           'C29 H50 N7 O17 P3 S' 
_chem_comp.formula_weight    893.73 
_chem_comp.id                CO8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OCTANOYL-COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A CO8 sing 70 n y 
N1A C6A CO8 doub 71 n y 
C2A N3A CO8 doub 72 n y 
C2A H2A CO8 sing 73 n n 
N3A C4A CO8 sing 74 n y 
C4A C5A CO8 doub 75 n y 
C4A N9A CO8 sing 76 n y 
C5A C6A CO8 sing 77 n y 
C5A N7A CO8 sing 78 n y 
C6A N6A CO8 sing 79 n n 
N6A H61A CO8 sing 80 n n 
N6A H62A CO8 sing 81 n n 
N7A C8A CO8 doub 82 n y 
C8A N9A CO8 sing 83 n y 
C8A H8A CO8 sing 84 n n 
N9A C1B CO8 sing 85 n n 
C1B C2B CO8 sing 86 n n 
C1B O4B CO8 sing 87 n n 
C1B H1B CO8 sing 88 n n 
C2B O2B CO8 sing 89 n n 
C2B C3B CO8 sing 90 n n 
C2B H2B CO8 sing 91 n n 
O2B HO2A CO8 sing 92 n n 
C3B O3B CO8 sing 93 n n 
C3B C4B CO8 sing 94 n n 
C3B H3B CO8 sing 95 n n 
O3B P3B CO8 sing 96 n n 
P3B O7A CO8 doub 97 n n 
P3B O8A CO8 sing 98 n n 
P3B O9A CO8 sing 99 n n 
O8A HOA8 CO8 sing 100 n n 
O9A HOA9 CO8 sing 101 n n 
C4B O4B CO8 sing 102 n n 
C4B C5B CO8 sing 103 n n 
C4B H4B CO8 sing 104 n n 
C5B O5B CO8 sing 105 n n 
C5B H51A CO8 sing 106 n n 
C5B H52A CO8 sing 107 n n 
O5B P1A CO8 sing 108 n n 
P1A O1A CO8 doub 109 n n 
P1A O2A CO8 sing 110 n n 
P1A O3A CO8 sing 111 n n 
O2A HOA2 CO8 sing 112 n n 
O3A P2A CO8 sing 113 n n 
P2A O4A CO8 doub 114 n n 
P2A O5A CO8 sing 115 n n 
P2A O6A CO8 sing 116 n n 
O5A HOA5 CO8 sing 117 n n 
O6A CCP CO8 sing 118 n n 
CBP CCP CO8 sing 119 n n 
CBP CDP CO8 sing 120 n n 
CBP CEP CO8 sing 121 n n 
CBP CAP CO8 sing 122 n n 
CCP H121 CO8 sing 123 n n 
CCP H122 CO8 sing 124 n n 
CDP H131 CO8 sing 125 n n 
CDP H132 CO8 sing 126 n n 
CDP H133 CO8 sing 127 n n 
CEP H141 CO8 sing 128 n n 
CEP H142 CO8 sing 129 n n 
CEP H143 CO8 sing 130 n n 
CAP OAP CO8 sing 131 n n 
CAP C9P CO8 sing 132 n n 
CAP H10 CO8 sing 133 n n 
OAP HO1 CO8 sing 134 n n 
C9P O9P CO8 doub 135 n n 
C9P N8P CO8 sing 136 n n 
N8P C7P CO8 sing 137 n n 
N8P HN8 CO8 sing 138 n n 
C7P C6P CO8 sing 139 n n 
C7P H71 CO8 sing 140 n n 
C7P H72 CO8 sing 141 n n 
C6P C5P CO8 sing 142 n n 
C6P H61 CO8 sing 143 n n 
C6P H62 CO8 sing 144 n n 
C5P O5P CO8 doub 145 n n 
C5P N4P CO8 sing 146 n n 
N4P C3P CO8 sing 147 n n 
N4P HN4 CO8 sing 148 n n 
C3P C2P CO8 sing 149 n n 
C3P H31 CO8 sing 150 n n 
C3P H32 CO8 sing 151 n n 
C2P S1P CO8 sing 152 n n 
C2P H21 CO8 sing 153 n n 
C2P H22 CO8 sing 154 n n 
S1P C1' CO8 sing 155 n n 
C1' O1' CO8 doub 156 n n 
C1' C2' CO8 sing 157 n n 
C2' C3' CO8 sing 158 n n 
C2' "H2'1" CO8 sing 159 n n 
C2' "H2'2" CO8 sing 160 n n 
C3' C4' CO8 sing 161 n n 
C3' "H3'1" CO8 sing 162 n n 
C3' "H3'2" CO8 sing 163 n n 
C4' C5' CO8 sing 164 n n 
C4' "H4'1" CO8 sing 165 n n 
C4' "H4'2" CO8 sing 166 n n 
C5' C6' CO8 sing 167 n n 
C5' "H5'1" CO8 sing 168 n n 
C5' "H5'2" CO8 sing 169 n n 
C6' C7' CO8 sing 170 n n 
C6' "H6'1" CO8 sing 171 n n 
C6' "H6'2" CO8 sing 172 n n 
C7' C8' CO8 sing 173 n n 
C7' "H7'1" CO8 sing 174 n n 
C7' "H7'2" CO8 sing 175 n n 
C8' "H8'1" CO8 sing 176 n n 
C8' "H8'2" CO8 sing 177 n n 
C8' "H8'3" CO8 sing 178 n n 
#
_atom_sites.entry_id                     6ROP 
_atom_sites.fract_transf_matrix[1][1]    0.006782 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002824 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004575 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 OCA A 1 901 905 OCA OCA . 
F 2 OCA B 1 901 905 OCA OCA . 
G 2 OCA C 1 901 905 OCA OCA . 
H 2 OCA D 1 901 905 OCA OCA . 
I 2 OCA D 1 902 906 OCA OCA . 
J 3 CO8 D 1 903 903 CO8 CO8 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A CO8 . . . J 3 -106.448 13.849 -57.266 1 132.12 ? N1A CO8 903 D 1 
HETATM 2 C C2A CO8 . . . J 3 -106.923 14.585 -56.252 1 121.75 ? C2A CO8 903 D 1 
HETATM 3 N N3A CO8 . . . J 3 -107.95 14.331 -55.445 1 139.64 ? N3A CO8 903 D 1 
HETATM 4 C C4A CO8 . . . J 3 -108.537 13.159 -55.762 1 148.57 ? C4A CO8 903 D 1 
HETATM 5 C C5A CO8 . . . J 3 -108.167 12.299 -56.777 1 148.53 ? C5A CO8 903 D 1 
HETATM 6 C C6A CO8 . . . J 3 -107.06 12.674 -57.565 1 142.99 ? C6A CO8 903 D 1 
HETATM 7 N N6A CO8 . . . J 3 -106.587 11.932 -58.564 1 131.54 ? N6A CO8 903 D 1 
HETATM 8 N N7A CO8 . . . J 3 -109.007 11.19 -56.801 1 146.46 ? N7A CO8 903 D 1 
HETATM 9 C C8A CO8 . . . J 3 -109.855 11.39 -55.818 1 144.04 ? C8A CO8 903 D 1 
HETATM 10 N N9A CO8 . . . J 3 -109.62 12.573 -55.156 1 144.55 ? N9A CO8 903 D 1 
HETATM 11 C C1B CO8 . . . J 3 -110.369 13.085 -54.006 1 142.47 ? C1B CO8 903 D 1 
HETATM 12 C C2B CO8 . . . J 3 -109.537 13.818 -52.957 1 138.46 ? C2B CO8 903 D 1 
HETATM 13 O O2B CO8 . . . J 3 -108.861 12.929 -52.096 1 136.4 ? O2B CO8 903 D 1 
HETATM 14 C C3B CO8 . . . J 3 -110.641 14.617 -52.275 1 137.28 ? C3B CO8 903 D 1 
HETATM 15 O O3B CO8 . . . J 3 -111.434 13.769 -51.445 1 150.67 ? O3B CO8 903 D 1 
HETATM 16 P P3B CO8 . . . J 3 -111.098 13.913 -49.871 1 146.11 ? P3B CO8 903 D 1 
HETATM 17 O O7A CO8 . . . J 3 -111.493 12.606 -49.188 1 127.06 ? O7A CO8 903 D 1 
HETATM 18 O O8A CO8 . . . J 3 -111.928 15.093 -49.386 1 126.45 ? O8A CO8 903 D 1 
HETATM 19 O O9A CO8 . . . J 3 -109.602 14.178 -49.782 1 159.22 ? O9A CO8 903 D 1 
HETATM 20 C C4B CO8 . . . J 3 -111.442 15.093 -53.479 1 131.55 ? C4B CO8 903 D 1 
HETATM 21 O O4B CO8 . . . J 3 -111.32 14.025 -54.456 1 138.44 ? O4B CO8 903 D 1 
HETATM 22 C C5B CO8 . . . J 3 -110.959 16.388 -54.084 1 135.72 ? C5B CO8 903 D 1 
HETATM 23 O O5B CO8 . . . J 3 -111.864 17.463 -53.71 1 138.71 ? O5B CO8 903 D 1 
HETATM 24 P P1A CO8 . . . J 3 -112.624 18.334 -54.828 1 150.59 ? P1A CO8 903 D 1 
HETATM 25 O O1A CO8 . . . J 3 -114.077 18.444 -54.493 1 161.7 ? O1A CO8 903 D 1 
HETATM 26 O O2A CO8 . . . J 3 -112.262 17.842 -56.19 1 184.77 ? O2A CO8 903 D 1 
HETATM 27 O O3A CO8 . . . J 3 -111.962 19.777 -54.625 1 132.11 ? O3A CO8 903 D 1 
HETATM 28 P P2A CO8 . . . J 3 -110.481 20.251 -54.251 1 114.13 ? P2A CO8 903 D 1 
HETATM 29 O O4A CO8 . . . J 3 -109.833 19.186 -53.426 1 115.31 ? O4A CO8 903 D 1 
HETATM 30 O O5A CO8 . . . J 3 -110.55 21.668 -53.77 1 103.4 ? O5A CO8 903 D 1 
HETATM 31 O O6A CO8 . . . J 3 -109.739 20.232 -55.674 1 114.39 ? O6A CO8 903 D 1 
HETATM 32 C CBP CO8 . . . J 3 -107.625 20.138 -56.879 1 103.76 ? CBP CO8 903 D 1 
HETATM 33 C CCP CO8 . . . J 3 -108.418 20.834 -55.779 1 106.55 ? CCP CO8 903 D 1 
HETATM 34 C CDP CO8 . . . J 3 -108.517 19.969 -58.114 1 109.46 ? CDP CO8 903 D 1 
HETATM 35 C CEP CO8 . . . J 3 -107.213 18.738 -56.408 1 98.96 ? CEP CO8 903 D 1 
HETATM 36 C CAP CO8 . . . J 3 -106.38 20.989 -57.201 1 104.86 ? CAP CO8 903 D 1 
HETATM 37 O OAP CO8 . . . J 3 -105.412 20.147 -57.803 1 121.13 ? OAP CO8 903 D 1 
HETATM 38 C C9P CO8 . . . J 3 -106.651 22.205 -58.088 1 103.84 ? C9P CO8 903 D 1 
HETATM 39 O O9P CO8 . . . J 3 -107.812 22.502 -58.367 1 109.56 ? O9P CO8 903 D 1 
HETATM 40 N N8P CO8 . . . J 3 -105.631 22.942 -58.52 1 96.44 ? N8P CO8 903 D 1 
HETATM 41 C C7P CO8 . . . J 3 -104.332 22.451 -58.964 1 90.48 ? C7P CO8 903 D 1 
HETATM 42 C C6P CO8 . . . J 3 -103.913 23.065 -60.294 1 94.01 ? C6P CO8 903 D 1 
HETATM 43 C C5P CO8 . . . J 3 -103.722 24.569 -60.329 1 94.33 ? C5P CO8 903 D 1 
HETATM 44 O O5P CO8 . . . J 3 -103.915 25.281 -59.333 1 90.16 ? O5P CO8 903 D 1 
HETATM 45 N N4P CO8 . . . J 3 -103.303 25.062 -61.504 1 92.29 ? N4P CO8 903 D 1 
HETATM 46 C C3P CO8 . . . J 3 -103.48 26.447 -61.921 1 106 ? C3P CO8 903 D 1 
HETATM 47 C C2P CO8 . . . J 3 -102.184 27.229 -61.94 1 117.48 ? C2P CO8 903 D 1 
HETATM 48 S S1P CO8 . . . J 3 -102.08 28.362 -63.352 1 135.44 ? S1P CO8 903 D 1 
HETATM 49 C C1' CO8 . . . J 3 -101.071 29.696 -62.75 1 142.14 ? C1' CO8 903 D 1 
HETATM 50 O O1' CO8 . . . J 3 -100.5 29.681 -61.684 1 136.26 ? O1' CO8 903 D 1 
HETATM 51 C C2' CO8 . . . J 3 -101.01 30.876 -63.696 1 133.71 ? C2' CO8 903 D 1 
HETATM 52 C C3' CO8 . . . J 3 -100.36 30.606 -65.027 1 122.66 ? C3' CO8 903 D 1 
HETATM 53 C C4' CO8 . . . J 3 -101.072 31.245 -66.215 1 111.86 ? C4' CO8 903 D 1 
HETATM 54 C C5' CO8 . . . J 3 -100.567 30.785 -67.575 1 108.58 ? C5' CO8 903 D 1 
HETATM 55 C C6' CO8 . . . J 3 -100.324 31.906 -68.573 1 107.69 ? C6' CO8 903 D 1 
HETATM 56 C C7' CO8 . . . J 3 -99.63 31.52 -69.865 1 103.48 ? C7' CO8 903 D 1 
HETATM 57 C C8' CO8 . . . J 3 -99.775 32.538 -70.981 1 96.95 ? C8' CO8 903 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           60 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           415 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           57 
#