data_6RP7 # _model_server_result.job_id I649b8-5BN1_f4KK9U1NCQ _model_server_result.datetime_utc '2024-11-15 05:34:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rp7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6RP7 # _exptl.entry_id 6RP7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RP7 _cell.length_a 91.669 _cell.length_b 91.669 _cell.length_c 141.043 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RP7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 245 A CYS 245 1_555 A SG CYS 265 A CYS 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 B O3' DT 6 D DT 6 1_555 B P 3DR 7 D 3DR 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale2 B O3' 3DR 7 D 3DR 7 1_555 B P DT 8 D DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? hydrog WATSON-CRICK hydrog1 B N3 DT 2 D DT 2 1_555 C N1 DA 14 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B O4 DT 2 D DT 2 1_555 C N6 DA 14 E DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N3 DC 3 D DC 3 1_555 C N1 DG 13 E DG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N4 DC 3 D DC 3 1_555 C O6 DG 13 E DG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O2 DC 3 D DC 3 1_555 C N2 DG 13 E DG 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DT 4 D DT 4 1_555 C N1 DA 12 E DA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O4 DT 4 D DT 4 1_555 C N6 DA 12 E DA 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DT 5 D DT 5 1_555 C N1 DA 11 E DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 DT 5 D DT 5 1_555 C N6 DA 11 E DA 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 6 D DT 6 1_555 C N1 DA 10 E DA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 6 D DT 6 1_555 C N6 DA 10 E DA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DT 8 D DT 8 1_555 C N1 DA 8 E DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O4 DT 8 D DT 8 1_555 C N6 DA 8 E DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DT 9 D DT 9 1_555 C N1 DA 7 E DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O4 DT 9 D DT 9 1_555 C N6 DA 7 E DA 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DT 10 D DT 10 1_555 C N1 DA 6 E DA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O4 DT 10 D DT 10 1_555 C N6 DA 6 E DA 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DC 11 D DC 11 1_555 C N1 DG 5 E DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N4 DC 11 D DC 11 1_555 C O6 DG 5 E DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O2 DC 11 D DC 11 1_555 C N2 DG 5 E DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 DT 12 D DT 12 1_555 C N1 DA 4 E DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O4 DT 12 D DT 12 1_555 C N6 DA 4 E DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N3 DC 13 D DC 13 1_555 C N1 DG 3 E DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N4 DC 13 D DC 13 1_555 C O6 DG 3 E DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O2 DC 13 D DC 13 1_555 C N2 DG 3 E DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 DG 14 D DG 14 1_555 C N3 DC 2 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N2 DG 14 D DG 14 1_555 C O2 DC 2 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O6 DG 14 D DG 14 1_555 C N4 DC 2 E DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 301 n n C1 C2 GOL sing 302 n n C1 H11 GOL sing 303 n n C1 H12 GOL sing 304 n n O1 HO1 GOL sing 305 n n C2 O2 GOL sing 306 n n C2 C3 GOL sing 307 n n C2 H2 GOL sing 308 n n O2 HO2 GOL sing 309 n n C3 O3 GOL sing 310 n n C3 H31 GOL sing 311 n n C3 H32 GOL sing 312 n n O3 HO3 GOL sing 313 n n # _atom_sites.entry_id 6RP7 _atom_sites.fract_transf_matrix[1][1] 0.010909 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 301 1 GOL GOL . E 5 KD8 D 1 101 1 KD8 LIG . F 6 HOH A 1 401 159 HOH HOH . F 6 HOH A 2 402 95 HOH HOH . F 6 HOH A 3 403 153 HOH HOH . F 6 HOH A 4 404 151 HOH HOH . F 6 HOH A 5 405 118 HOH HOH . F 6 HOH A 6 406 81 HOH HOH . F 6 HOH A 7 407 29 HOH HOH . F 6 HOH A 8 408 166 HOH HOH . F 6 HOH A 9 409 58 HOH HOH . F 6 HOH A 10 410 54 HOH HOH . F 6 HOH A 11 411 72 HOH HOH . F 6 HOH A 12 412 106 HOH HOH . F 6 HOH A 13 413 45 HOH HOH . F 6 HOH A 14 414 73 HOH HOH . F 6 HOH A 15 415 122 HOH HOH . F 6 HOH A 16 416 176 HOH HOH . F 6 HOH A 17 417 61 HOH HOH . F 6 HOH A 18 418 8 HOH HOH . F 6 HOH A 19 419 24 HOH HOH . F 6 HOH A 20 420 84 HOH HOH . F 6 HOH A 21 421 19 HOH HOH . F 6 HOH A 22 422 104 HOH HOH . F 6 HOH A 23 423 68 HOH HOH . F 6 HOH A 24 424 86 HOH HOH . F 6 HOH A 25 425 116 HOH HOH . F 6 HOH A 26 426 99 HOH HOH . F 6 HOH A 27 427 3 HOH HOH . F 6 HOH A 28 428 89 HOH HOH . F 6 HOH A 29 429 128 HOH HOH . F 6 HOH A 30 430 124 HOH HOH . F 6 HOH A 31 431 6 HOH HOH . F 6 HOH A 32 432 5 HOH HOH . F 6 HOH A 33 433 18 HOH HOH . F 6 HOH A 34 434 71 HOH HOH . F 6 HOH A 35 435 143 HOH HOH . F 6 HOH A 36 436 98 HOH HOH . F 6 HOH A 37 437 39 HOH HOH . F 6 HOH A 38 438 74 HOH HOH . F 6 HOH A 39 439 110 HOH HOH . F 6 HOH A 40 440 15 HOH HOH . F 6 HOH A 41 441 35 HOH HOH . F 6 HOH A 42 442 59 HOH HOH . F 6 HOH A 43 443 115 HOH HOH . F 6 HOH A 44 444 49 HOH HOH . F 6 HOH A 45 445 91 HOH HOH . F 6 HOH A 46 446 87 HOH HOH . F 6 HOH A 47 447 79 HOH HOH . F 6 HOH A 48 448 117 HOH HOH . F 6 HOH A 49 449 4 HOH HOH . F 6 HOH A 50 450 28 HOH HOH . F 6 HOH A 51 451 37 HOH HOH . F 6 HOH A 52 452 83 HOH HOH . F 6 HOH A 53 453 69 HOH HOH . F 6 HOH A 54 454 149 HOH HOH . F 6 HOH A 55 455 169 HOH HOH . F 6 HOH A 56 456 2 HOH HOH . F 6 HOH A 57 457 113 HOH HOH . F 6 HOH A 58 458 22 HOH HOH . F 6 HOH A 59 459 140 HOH HOH . F 6 HOH A 60 460 21 HOH HOH . F 6 HOH A 61 461 102 HOH HOH . F 6 HOH A 62 462 11 HOH HOH . F 6 HOH A 63 463 1 HOH HOH . F 6 HOH A 64 464 17 HOH HOH . F 6 HOH A 65 465 7 HOH HOH . F 6 HOH A 66 466 47 HOH HOH . F 6 HOH A 67 467 152 HOH HOH . F 6 HOH A 68 468 65 HOH HOH . F 6 HOH A 69 469 43 HOH HOH . F 6 HOH A 70 470 27 HOH HOH . F 6 HOH A 71 471 33 HOH HOH . F 6 HOH A 72 472 76 HOH HOH . F 6 HOH A 73 473 119 HOH HOH . F 6 HOH A 74 474 46 HOH HOH . F 6 HOH A 75 475 130 HOH HOH . F 6 HOH A 76 476 171 HOH HOH . F 6 HOH A 77 477 32 HOH HOH . F 6 HOH A 78 478 170 HOH HOH . F 6 HOH A 79 479 23 HOH HOH . F 6 HOH A 80 480 80 HOH HOH . F 6 HOH A 81 481 146 HOH HOH . F 6 HOH A 82 482 16 HOH HOH . F 6 HOH A 83 483 78 HOH HOH . F 6 HOH A 84 484 101 HOH HOH . F 6 HOH A 85 485 9 HOH HOH . F 6 HOH A 86 486 156 HOH HOH . F 6 HOH A 87 487 64 HOH HOH . F 6 HOH A 88 488 108 HOH HOH . F 6 HOH A 89 489 125 HOH HOH . F 6 HOH A 90 490 107 HOH HOH . F 6 HOH A 91 491 63 HOH HOH . F 6 HOH A 92 492 14 HOH HOH . F 6 HOH A 93 493 51 HOH HOH . F 6 HOH A 94 494 60 HOH HOH . F 6 HOH A 95 495 42 HOH HOH . F 6 HOH A 96 496 114 HOH HOH . F 6 HOH A 97 497 138 HOH HOH . F 6 HOH A 98 498 56 HOH HOH . F 6 HOH A 99 499 48 HOH HOH . F 6 HOH A 100 500 109 HOH HOH . F 6 HOH A 101 501 40 HOH HOH . F 6 HOH A 102 502 30 HOH HOH . F 6 HOH A 103 503 10 HOH HOH . F 6 HOH A 104 504 154 HOH HOH . F 6 HOH A 105 505 66 HOH HOH . F 6 HOH A 106 506 77 HOH HOH . F 6 HOH A 107 507 12 HOH HOH . F 6 HOH A 108 508 165 HOH HOH . F 6 HOH A 109 509 123 HOH HOH . F 6 HOH A 110 510 38 HOH HOH . F 6 HOH A 111 511 139 HOH HOH . F 6 HOH A 112 512 31 HOH HOH . F 6 HOH A 113 513 155 HOH HOH . F 6 HOH A 114 514 20 HOH HOH . F 6 HOH A 115 515 70 HOH HOH . F 6 HOH A 116 516 162 HOH HOH . F 6 HOH A 117 517 94 HOH HOH . F 6 HOH A 118 518 62 HOH HOH . F 6 HOH A 119 519 44 HOH HOH . F 6 HOH A 120 520 147 HOH HOH . F 6 HOH A 121 521 121 HOH HOH . F 6 HOH A 122 522 85 HOH HOH . F 6 HOH A 123 523 136 HOH HOH . F 6 HOH A 124 524 92 HOH HOH . F 6 HOH A 125 525 26 HOH HOH . F 6 HOH A 126 526 57 HOH HOH . F 6 HOH A 127 527 141 HOH HOH . F 6 HOH A 128 528 55 HOH HOH . F 6 HOH A 129 529 127 HOH HOH . F 6 HOH A 130 530 174 HOH HOH . F 6 HOH A 131 531 53 HOH HOH . F 6 HOH A 132 532 144 HOH HOH . F 6 HOH A 133 533 133 HOH HOH . F 6 HOH A 134 534 120 HOH HOH . F 6 HOH A 135 535 175 HOH HOH . F 6 HOH A 136 536 132 HOH HOH . F 6 HOH A 137 537 172 HOH HOH . F 6 HOH A 138 538 173 HOH HOH . F 6 HOH A 139 539 34 HOH HOH . F 6 HOH A 140 540 137 HOH HOH . F 6 HOH A 141 541 105 HOH HOH . F 6 HOH A 142 542 88 HOH HOH . F 6 HOH A 143 543 131 HOH HOH . F 6 HOH A 144 544 103 HOH HOH . F 6 HOH A 145 545 111 HOH HOH . F 6 HOH A 146 546 129 HOH HOH . F 6 HOH A 147 547 75 HOH HOH . F 6 HOH A 148 548 126 HOH HOH . F 6 HOH A 149 549 157 HOH HOH . F 6 HOH A 150 550 161 HOH HOH . F 6 HOH A 151 551 148 HOH HOH . F 6 HOH A 152 552 150 HOH HOH . F 6 HOH A 153 553 112 HOH HOH . F 6 HOH A 154 554 177 HOH HOH . F 6 HOH A 155 555 142 HOH HOH . F 6 HOH A 156 556 93 HOH HOH . G 6 HOH D 1 201 25 HOH HOH . G 6 HOH D 2 202 134 HOH HOH . G 6 HOH D 3 203 50 HOH HOH . G 6 HOH D 4 204 36 HOH HOH . G 6 HOH D 5 205 13 HOH HOH . G 6 HOH D 6 206 100 HOH HOH . G 6 HOH D 7 207 160 HOH HOH . G 6 HOH D 8 208 168 HOH HOH . G 6 HOH D 9 209 167 HOH HOH . G 6 HOH D 10 210 41 HOH HOH . G 6 HOH D 11 211 96 HOH HOH . G 6 HOH D 12 212 67 HOH HOH . G 6 HOH D 13 213 52 HOH HOH . G 6 HOH D 14 214 90 HOH HOH . G 6 HOH D 15 215 145 HOH HOH . G 6 HOH D 16 216 164 HOH HOH . H 6 HOH E 1 101 158 HOH HOH . H 6 HOH E 2 102 163 HOH HOH . H 6 HOH E 3 103 82 HOH HOH . H 6 HOH E 4 104 135 HOH HOH . H 6 HOH E 5 105 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -16.9 10.553 17.221 1 45.62 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . D 4 -17.008 10.385 15.847 1 38.87 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . D 4 -17.188 12.074 17.532 1 59.14 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . D 4 -18.454 12.504 17.095 1 58.23 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . D 4 -17.106 12.099 19.033 1 65.5 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . D 4 -17.666 10.882 19.489 1 49.48 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #