data_6RPS # _model_server_result.job_id FG6tSfTVf5BWd30H6l4D2A _model_server_result.datetime_utc '2025-01-10 09:59:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":303}' # _entry.id 6RPS # _exptl.entry_id 6RPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RPS _cell.length_a 77.335 _cell.length_b 222.165 _cell.length_c 266.988 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K,L,M,R,V 1 1 B,C,D,N,O,P,Q,S,T,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 L N N ? 7 M N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 23 1_555 A SG CYS 201 A CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 21 B CYS 23 1_555 B SG CYS 201 B CYS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 C SG CYS 25 M CYS 23 1_555 C SG CYS 90 M CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 C SG CYS 136 M CYS 134 1_555 C SG CYS 196 M CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 D SG CYS 22 N CYS 22 1_555 D SG CYS 95 N CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf6 D SG CYS 148 N CYS 140 1_555 D SG CYS 204 N CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 E SG CYS 25 L CYS 23 1_555 E SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf8 E SG CYS 136 L CYS 134 1_555 E SG CYS 196 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf9 F SG CYS 22 H CYS 22 1_555 F SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf10 F SG CYS 148 H CYS 140 1_555 F SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A NE2 HIS 32 A HIS 34 1_555 L CD CD . A CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc2 A OD1 ASP 34 A ASP 36 1_555 L CD CD . A CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc3 A NE2 HIS 90 A HIS 94 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 A NE2 HIS 92 A HIS 96 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 A OD1 ASP 98 A ASP 102 1_555 M CD CD . A CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc6 A OD2 ASP 98 A ASP 102 1_555 M CD CD . A CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc7 A ND1 HIS 116 A HIS 119 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc8 A OE1 GLU 180 A GLU 183 1_555 J CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc9 A OE2 GLU 180 A GLU 183 1_555 J CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc10 A OE1 GLU 184 A GLU 187 1_555 J CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc11 A OE2 GLU 184 A GLU 187 1_555 J CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc12 G ZN ZN . A ZN 301 1_555 H OXT ACT . A ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc13 G ZN ZN . A ZN 301 1_555 R O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc14 L CD CD . A CD 306 1_555 B OD1 ASP 98 B ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc15 L CD CD . A CD 306 1_555 B OD2 ASP 98 B ASP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc16 L CD CD . A CD 306 1_555 B ND1 HIS 100 B HIS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc17 M CD CD . A CD 307 1_555 R O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc18 M CD CD . A CD 307 1_555 B NE2 HIS 32 B HIS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc19 M CD CD . A CD 307 1_555 B OD1 ASP 34 B ASP 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc20 M CD CD . A CD 307 1_555 B OD2 ASP 34 B ASP 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc21 B NE2 HIS 90 B HIS 94 1_555 N ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc22 B NE2 HIS 92 B HIS 96 1_555 N ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc23 B ND1 HIS 116 B HIS 119 1_555 N ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc24 B OE1 GLU 180 B GLU 183 1_555 P CD CD . B CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc25 B OE2 GLU 180 B GLU 183 1_555 P CD CD . B CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc26 B OE1 GLU 184 B GLU 187 1_555 P CD CD . B CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc27 B OE2 GLU 184 B GLU 187 1_555 P CD CD . B CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc28 N ZN ZN . B ZN 301 1_555 O OXT ACT . B ACT 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc29 N ZN ZN . B ZN 301 1_555 S O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6RPS _atom_sites.fract_transf_matrix[1][1] 0.012931 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ZN A 1 301 300 ZN ZN . H 5 ACT A 1 302 400 ACT ACT . I 6 SO4 A 1 303 601 SO4 SO4 . J 7 CD A 1 304 302 CD CD . K 8 CL A 1 305 3 CL CL . L 7 CD A 1 306 301 CD CD . M 7 CD A 1 307 301 CD CD . N 4 ZN B 1 301 300 ZN ZN . O 5 ACT B 1 302 400 ACT ACT . P 7 CD B 1 303 302 CD CD . Q 6 SO4 N 1 601 601 SO4 SO4 . R 9 HOH A 1 401 1 HOH HOH . R 9 HOH A 2 402 12 HOH HOH . R 9 HOH A 3 403 14 HOH HOH . R 9 HOH A 4 404 4 HOH HOH . R 9 HOH A 5 405 2 HOH HOH . R 9 HOH A 6 406 10 HOH HOH . R 9 HOH A 7 407 19 HOH HOH . R 9 HOH A 8 408 11 HOH HOH . R 9 HOH A 9 409 16 HOH HOH . S 9 HOH B 1 401 5 HOH HOH . S 9 HOH B 2 402 20 HOH HOH . S 9 HOH B 3 403 15 HOH HOH . S 9 HOH B 4 404 6 HOH HOH . S 9 HOH B 5 405 18 HOH HOH . T 9 HOH M 1 301 3 HOH HOH . T 9 HOH M 2 302 21 HOH HOH . U 9 HOH N 1 701 9 HOH HOH . U 9 HOH N 2 702 17 HOH HOH . U 9 HOH N 3 703 13 HOH HOH . V 9 HOH L 1 301 22 HOH HOH . V 9 HOH L 2 302 8 HOH HOH . V 9 HOH L 3 303 7 HOH HOH . V 9 HOH L 4 304 23 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 7 _atom_site.Cartn_x 39.529 _atom_site.Cartn_y 43.801 _atom_site.Cartn_z 218.435 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 303 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #