data_6RPT
#
_model_server_result.job_id            9Ysai24p8l205Uzz-E5w9A 
_model_server_result.datetime_utc      '2025-07-10 10:18:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6rpt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":101}' 
#
_entry.id    6RPT 
#
_exptl.entry_id    6RPT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.02 
_cell.angle_gamma         90 
_cell.entry_id            6RPT 
_cell.length_a            86.83 
_cell.length_b            56.948 
_cell.length_c            90.072 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6RPT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,L,M 1 1 
C,D,I,J,N,O 2 1 
E,F,K,P,Q 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 42 F CYS 21 1_555 B SG CYS 66 F CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 61 F CYS 40 1_555 B SG CYS 100 F CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 B SG CYS 78 F CYS 57 1_555 B SG CYS 101 F CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 B SG CYS 87 F CYS 66 1_555 B SG CYS 106 F CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 D SG CYS 42 B CYS 21 1_555 D SG CYS 66 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 D SG CYS 61 B CYS 40 1_555 D SG CYS 100 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 D SG CYS 78 B CYS 57 1_555 D SG CYS 101 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf8 D SG CYS 87 B CYS 66 1_555 D SG CYS 106 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 F SG CYS 42 D CYS 21 1_555 F SG CYS 66 D CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf10 F SG CYS 61 D CYS 40 1_555 F SG CYS 100 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 F SG CYS 78 D CYS 57 1_555 F SG CYS 101 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 F SG CYS 87 D CYS 66 1_555 F SG CYS 106 D CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6RPT 
_atom_sites.fract_transf_matrix[1][1]    0.011517 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004893 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01756 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012063 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 GOL E 1 501 4 GOL GOL . 
H 3 GOL F 1 101 6 GOL GOL . 
I 3 GOL A 1 501 3 GOL GOL . 
J 3 GOL B 1 101 5 GOL GOL . 
K 3 GOL C 1 501 7 GOL GOL . 
L 4 HOH E 1 601 31 HOH HOH . 
L 4 HOH E 2 602 119 HOH HOH . 
L 4 HOH E 3 603 24 HOH HOH . 
L 4 HOH E 4 604 71 HOH HOH . 
L 4 HOH E 5 605 66 HOH HOH . 
L 4 HOH E 6 606 88 HOH HOH . 
L 4 HOH E 7 607 4 HOH HOH . 
L 4 HOH E 8 608 20 HOH HOH . 
L 4 HOH E 9 609 76 HOH HOH . 
L 4 HOH E 10 610 87 HOH HOH . 
L 4 HOH E 11 611 79 HOH HOH . 
L 4 HOH E 12 612 84 HOH HOH . 
L 4 HOH E 13 613 53 HOH HOH . 
L 4 HOH E 14 614 14 HOH HOH . 
L 4 HOH E 15 615 11 HOH HOH . 
L 4 HOH E 16 616 16 HOH HOH . 
L 4 HOH E 17 617 63 HOH HOH . 
L 4 HOH E 18 618 35 HOH HOH . 
L 4 HOH E 19 619 102 HOH HOH . 
L 4 HOH E 20 620 37 HOH HOH . 
L 4 HOH E 21 621 106 HOH HOH . 
M 4 HOH F 1 201 58 HOH HOH . 
M 4 HOH F 2 202 43 HOH HOH . 
M 4 HOH F 3 203 68 HOH HOH . 
M 4 HOH F 4 204 7 HOH HOH . 
M 4 HOH F 5 205 52 HOH HOH . 
M 4 HOH F 6 206 1 HOH HOH . 
M 4 HOH F 7 207 62 HOH HOH . 
M 4 HOH F 8 208 6 HOH HOH . 
M 4 HOH F 9 209 23 HOH HOH . 
M 4 HOH F 10 210 65 HOH HOH . 
M 4 HOH F 11 211 32 HOH HOH . 
M 4 HOH F 12 212 26 HOH HOH . 
M 4 HOH F 13 213 114 HOH HOH . 
M 4 HOH F 14 214 46 HOH HOH . 
M 4 HOH F 15 215 8 HOH HOH . 
M 4 HOH F 16 216 117 HOH HOH . 
M 4 HOH F 17 217 56 HOH HOH . 
M 4 HOH F 18 218 94 HOH HOH . 
M 4 HOH F 19 219 60 HOH HOH . 
M 4 HOH F 20 220 64 HOH HOH . 
M 4 HOH F 21 221 55 HOH HOH . 
M 4 HOH F 22 222 81 HOH HOH . 
M 4 HOH F 23 223 77 HOH HOH . 
M 4 HOH F 24 224 93 HOH HOH . 
M 4 HOH F 25 225 113 HOH HOH . 
M 4 HOH F 26 226 49 HOH HOH . 
M 4 HOH F 27 227 91 HOH HOH . 
N 4 HOH A 1 601 120 HOH HOH . 
N 4 HOH A 2 602 45 HOH HOH . 
N 4 HOH A 3 603 85 HOH HOH . 
N 4 HOH A 4 604 83 HOH HOH . 
N 4 HOH A 5 605 67 HOH HOH . 
N 4 HOH A 6 606 90 HOH HOH . 
N 4 HOH A 7 607 121 HOH HOH . 
N 4 HOH A 8 608 75 HOH HOH . 
N 4 HOH A 9 609 51 HOH HOH . 
N 4 HOH A 10 610 28 HOH HOH . 
N 4 HOH A 11 611 105 HOH HOH . 
N 4 HOH A 12 612 116 HOH HOH . 
N 4 HOH A 13 613 101 HOH HOH . 
O 4 HOH B 1 201 115 HOH HOH . 
O 4 HOH B 2 202 25 HOH HOH . 
O 4 HOH B 3 203 18 HOH HOH . 
O 4 HOH B 4 204 12 HOH HOH . 
O 4 HOH B 5 205 57 HOH HOH . 
P 4 HOH C 1 601 80 HOH HOH . 
P 4 HOH C 2 602 54 HOH HOH . 
P 4 HOH C 3 603 118 HOH HOH . 
P 4 HOH C 4 604 59 HOH HOH . 
P 4 HOH C 5 605 72 HOH HOH . 
P 4 HOH C 6 606 13 HOH HOH . 
P 4 HOH C 7 607 100 HOH HOH . 
P 4 HOH C 8 608 10 HOH HOH . 
P 4 HOH C 9 609 89 HOH HOH . 
P 4 HOH C 10 610 15 HOH HOH . 
P 4 HOH C 11 611 9 HOH HOH . 
P 4 HOH C 12 612 78 HOH HOH . 
P 4 HOH C 13 613 104 HOH HOH . 
P 4 HOH C 14 614 39 HOH HOH . 
P 4 HOH C 15 615 36 HOH HOH . 
P 4 HOH C 16 616 74 HOH HOH . 
P 4 HOH C 17 617 50 HOH HOH . 
P 4 HOH C 18 618 107 HOH HOH . 
P 4 HOH C 19 619 19 HOH HOH . 
P 4 HOH C 20 620 92 HOH HOH . 
P 4 HOH C 21 621 40 HOH HOH . 
P 4 HOH C 22 622 73 HOH HOH . 
P 4 HOH C 23 623 109 HOH HOH . 
P 4 HOH C 24 624 103 HOH HOH . 
P 4 HOH C 25 625 38 HOH HOH . 
Q 4 HOH D 1 101 5 HOH HOH . 
Q 4 HOH D 2 102 98 HOH HOH . 
Q 4 HOH D 3 103 110 HOH HOH . 
Q 4 HOH D 4 104 21 HOH HOH . 
Q 4 HOH D 5 105 3 HOH HOH . 
Q 4 HOH D 6 106 2 HOH HOH . 
Q 4 HOH D 7 107 61 HOH HOH . 
Q 4 HOH D 8 108 108 HOH HOH . 
Q 4 HOH D 9 109 41 HOH HOH . 
Q 4 HOH D 10 110 17 HOH HOH . 
Q 4 HOH D 11 111 22 HOH HOH . 
Q 4 HOH D 12 112 70 HOH HOH . 
Q 4 HOH D 13 113 112 HOH HOH . 
Q 4 HOH D 14 114 48 HOH HOH . 
Q 4 HOH D 15 115 29 HOH HOH . 
Q 4 HOH D 16 116 95 HOH HOH . 
Q 4 HOH D 17 117 47 HOH HOH . 
Q 4 HOH D 18 118 27 HOH HOH . 
Q 4 HOH D 19 119 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 3 29.123 4.483 16.41 1 79.42 ? C1 GOL 101 B 1 
HETATM 2 O O1 GOL . . . J 3 29.914 3.953 17.429 1 83 ? O1 GOL 101 B 1 
HETATM 3 C C2 GOL . . . J 3 27.945 3.504 16.202 1 74.58 ? C2 GOL 101 B 1 
HETATM 4 O O2 GOL . . . J 3 26.985 3.627 17.197 1 74.64 ? O2 GOL 101 B 1 
HETATM 5 C C3 GOL . . . J 3 27.388 3.849 14.807 1 70.55 ? C3 GOL 101 B 1 
HETATM 6 O O3 GOL . . . J 3 26.619 2.76 14.402 1 67.11 ? O3 GOL 101 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           689 
_model_server_stats.encode_time_ms          60 
_model_server_stats.element_count           6 
#