data_6RQA # _model_server_result.job_id UCxe0lEzi-_dg1JK1ptlkg _model_server_result.datetime_utc '2024-12-21 17:07:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rqa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 6RQA # _exptl.entry_id 6RQA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RQA _cell.length_a 50.386 _cell.length_b 72.407 _cell.length_c 164.266 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 69 A ASP 48 1_555 D TB TB . A TB 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc2 A OD2 ASP 69 A ASP 48 1_555 D TB TB . A TB 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 A OE1 GLU 184 A GLU 163 1_555 E TB TB . A TB 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc4 A OE2 GLU 184 A GLU 163 1_555 E TB TB . A TB 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc5 B OD1 ASP 69 B ASP 48 1_555 G TB 7MT . B 7MT 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc6 B OD2 ASP 69 B ASP 48 1_555 G TB 7MT . B 7MT 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 298 n n PA O2A NAD sing 299 n n PA O5B NAD sing 300 n n PA O3 NAD sing 301 n n O2A HOA2 NAD sing 302 n n O5B C5B NAD sing 303 n n C5B C4B NAD sing 304 n n C5B H51A NAD sing 305 n n C5B H52A NAD sing 306 n n C4B O4B NAD sing 307 n n C4B C3B NAD sing 308 n n C4B H4B NAD sing 309 n n O4B C1B NAD sing 310 n n C3B O3B NAD sing 311 n n C3B C2B NAD sing 312 n n C3B H3B NAD sing 313 n n O3B HO3A NAD sing 314 n n C2B O2B NAD sing 315 n n C2B C1B NAD sing 316 n n C2B H2B NAD sing 317 n n O2B HO2A NAD sing 318 n n C1B N9A NAD sing 319 n n C1B H1B NAD sing 320 n n N9A C8A NAD sing 321 n y N9A C4A NAD sing 322 n y C8A N7A NAD doub 323 n y C8A H8A NAD sing 324 n n N7A C5A NAD sing 325 n y C5A C6A NAD sing 326 n y C5A C4A NAD doub 327 n y C6A N6A NAD sing 328 n n C6A N1A NAD doub 329 n y N6A H61A NAD sing 330 n n N6A H62A NAD sing 331 n n N1A C2A NAD sing 332 n y C2A N3A NAD doub 333 n y C2A H2A NAD sing 334 n n N3A C4A NAD sing 335 n y O3 PN NAD sing 336 n n PN O1N NAD doub 337 n n PN O2N NAD sing 338 n n PN O5D NAD sing 339 n n O5D C5D NAD sing 340 n n C5D C4D NAD sing 341 n n C5D H51N NAD sing 342 n n C5D H52N NAD sing 343 n n C4D O4D NAD sing 344 n n C4D C3D NAD sing 345 n n C4D H4D NAD sing 346 n n O4D C1D NAD sing 347 n n C3D O3D NAD sing 348 n n C3D C2D NAD sing 349 n n C3D H3D NAD sing 350 n n O3D HO3N NAD sing 351 n n C2D O2D NAD sing 352 n n C2D C1D NAD sing 353 n n C2D H2D NAD sing 354 n n O2D HO2N NAD sing 355 n n C1D N1N NAD sing 356 n n C1D H1D NAD sing 357 n n N1N C2N NAD sing 358 n y N1N C6N NAD doub 359 n y C2N C3N NAD doub 360 n y C2N H2N NAD sing 361 n n C3N C7N NAD sing 362 n n C3N C4N NAD sing 363 n y C7N O7N NAD doub 364 n n C7N N7N NAD sing 365 n n N7N H71N NAD sing 366 n n N7N H72N NAD sing 367 n n C4N C5N NAD doub 368 n y C4N H4N NAD sing 369 n n C5N C6N NAD sing 370 n y C5N H5N NAD sing 371 n n C6N H6N NAD sing 372 n n # _atom_sites.entry_id 6RQA _atom_sites.fract_transf_matrix[1][1] 0.019847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006088 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 350 NAD NAD . D 3 TB A 1 402 370 TB TB . E 3 TB A 1 403 380 TB TB . F 2 NAD B 1 401 350 NAD NAD . G 4 7MT B 1 402 360 7MT 7MT . H 5 HOH A 1 501 41 HOH HOH . H 5 HOH A 2 502 21 HOH HOH . H 5 HOH A 3 503 127 HOH HOH . H 5 HOH A 4 504 49 HOH HOH . H 5 HOH A 5 505 61 HOH HOH . H 5 HOH A 6 506 95 HOH HOH . H 5 HOH A 7 507 97 HOH HOH . H 5 HOH A 8 508 72 HOH HOH . H 5 HOH A 9 509 13 HOH HOH . H 5 HOH A 10 510 46 HOH HOH . H 5 HOH A 11 511 123 HOH HOH . H 5 HOH A 12 512 119 HOH HOH . H 5 HOH A 13 513 3 HOH HOH . H 5 HOH A 14 514 68 HOH HOH . H 5 HOH A 15 515 85 HOH HOH . H 5 HOH A 16 516 10 HOH HOH . H 5 HOH A 17 517 16 HOH HOH . H 5 HOH A 18 518 118 HOH HOH . H 5 HOH A 19 519 94 HOH HOH . H 5 HOH A 20 520 117 HOH HOH . H 5 HOH A 21 521 2 HOH HOH . H 5 HOH A 22 522 33 HOH HOH . H 5 HOH A 23 523 6 HOH HOH . H 5 HOH A 24 524 7 HOH HOH . H 5 HOH A 25 525 25 HOH HOH . H 5 HOH A 26 526 87 HOH HOH . H 5 HOH A 27 527 27 HOH HOH . H 5 HOH A 28 528 102 HOH HOH . H 5 HOH A 29 529 108 HOH HOH . H 5 HOH A 30 530 19 HOH HOH . H 5 HOH A 31 531 12 HOH HOH . H 5 HOH A 32 532 34 HOH HOH . H 5 HOH A 33 533 38 HOH HOH . H 5 HOH A 34 534 45 HOH HOH . H 5 HOH A 35 535 106 HOH HOH . H 5 HOH A 36 536 125 HOH HOH . H 5 HOH A 37 537 15 HOH HOH . H 5 HOH A 38 538 59 HOH HOH . H 5 HOH A 39 539 81 HOH HOH . H 5 HOH A 40 540 103 HOH HOH . H 5 HOH A 41 541 31 HOH HOH . H 5 HOH A 42 542 51 HOH HOH . H 5 HOH A 43 543 73 HOH HOH . H 5 HOH A 44 544 67 HOH HOH . H 5 HOH A 45 545 22 HOH HOH . H 5 HOH A 46 546 63 HOH HOH . H 5 HOH A 47 547 83 HOH HOH . H 5 HOH A 48 548 9 HOH HOH . H 5 HOH A 49 549 52 HOH HOH . H 5 HOH A 50 550 109 HOH HOH . H 5 HOH A 51 551 78 HOH HOH . H 5 HOH A 52 552 77 HOH HOH . H 5 HOH A 53 553 112 HOH HOH . H 5 HOH A 54 554 32 HOH HOH . H 5 HOH A 55 555 30 HOH HOH . H 5 HOH A 56 556 98 HOH HOH . H 5 HOH A 57 557 36 HOH HOH . H 5 HOH A 58 558 105 HOH HOH . H 5 HOH A 59 559 44 HOH HOH . H 5 HOH A 60 560 115 HOH HOH . H 5 HOH A 61 561 53 HOH HOH . H 5 HOH A 62 562 116 HOH HOH . H 5 HOH A 63 563 126 HOH HOH . H 5 HOH A 64 564 58 HOH HOH . H 5 HOH A 65 565 37 HOH HOH . I 5 HOH B 1 501 120 HOH HOH . I 5 HOH B 2 502 35 HOH HOH . I 5 HOH B 3 503 50 HOH HOH . I 5 HOH B 4 504 11 HOH HOH . I 5 HOH B 5 505 76 HOH HOH . I 5 HOH B 6 506 4 HOH HOH . I 5 HOH B 7 507 5 HOH HOH . I 5 HOH B 8 508 55 HOH HOH . I 5 HOH B 9 509 47 HOH HOH . I 5 HOH B 10 510 42 HOH HOH . I 5 HOH B 11 511 56 HOH HOH . I 5 HOH B 12 512 57 HOH HOH . I 5 HOH B 13 513 65 HOH HOH . I 5 HOH B 14 514 69 HOH HOH . I 5 HOH B 15 515 18 HOH HOH . I 5 HOH B 16 516 1 HOH HOH . I 5 HOH B 17 517 8 HOH HOH . I 5 HOH B 18 518 20 HOH HOH . I 5 HOH B 19 519 86 HOH HOH . I 5 HOH B 20 520 29 HOH HOH . I 5 HOH B 21 521 66 HOH HOH . I 5 HOH B 22 522 82 HOH HOH . I 5 HOH B 23 523 75 HOH HOH . I 5 HOH B 24 524 14 HOH HOH . I 5 HOH B 25 525 71 HOH HOH . I 5 HOH B 26 526 89 HOH HOH . I 5 HOH B 27 527 122 HOH HOH . I 5 HOH B 28 528 113 HOH HOH . I 5 HOH B 29 529 48 HOH HOH . I 5 HOH B 30 530 43 HOH HOH . I 5 HOH B 31 531 23 HOH HOH . I 5 HOH B 32 532 28 HOH HOH . I 5 HOH B 33 533 104 HOH HOH . I 5 HOH B 34 534 84 HOH HOH . I 5 HOH B 35 535 26 HOH HOH . I 5 HOH B 36 536 111 HOH HOH . I 5 HOH B 37 537 70 HOH HOH . I 5 HOH B 38 538 110 HOH HOH . I 5 HOH B 39 539 88 HOH HOH . I 5 HOH B 40 540 24 HOH HOH . I 5 HOH B 41 541 17 HOH HOH . I 5 HOH B 42 542 107 HOH HOH . I 5 HOH B 43 543 101 HOH HOH . I 5 HOH B 44 544 92 HOH HOH . I 5 HOH B 45 545 96 HOH HOH . I 5 HOH B 46 546 80 HOH HOH . I 5 HOH B 47 547 39 HOH HOH . I 5 HOH B 48 548 99 HOH HOH . I 5 HOH B 49 549 74 HOH HOH . I 5 HOH B 50 550 93 HOH HOH . I 5 HOH B 51 551 64 HOH HOH . I 5 HOH B 52 552 100 HOH HOH . I 5 HOH B 53 553 54 HOH HOH . I 5 HOH B 54 554 62 HOH HOH . I 5 HOH B 55 555 90 HOH HOH . I 5 HOH B 56 556 40 HOH HOH . I 5 HOH B 57 557 79 HOH HOH . I 5 HOH B 58 558 91 HOH HOH . I 5 HOH B 59 559 114 HOH HOH . I 5 HOH B 60 560 124 HOH HOH . I 5 HOH B 61 561 121 HOH HOH . I 5 HOH B 62 562 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 2 -5.024 21.694 43.759 0.75 90.88 ? PA NAD 401 B 1 HETATM 2 O O1A NAD . . . F 2 -5.966 21.017 44.717 0.75 93.25 ? O1A NAD 401 B 1 HETATM 3 O O2A NAD . . . F 2 -4.583 23.119 43.662 0.75 84.02 ? O2A NAD 401 B 1 HETATM 4 O O5B NAD . . . F 2 -5.983 21.543 42.312 0.75 92.97 ? O5B NAD 401 B 1 HETATM 5 C C5B NAD . . . F 2 -6.907 20.548 42.531 0.75 77.03 ? C5B NAD 401 B 1 HETATM 6 C C4B NAD . . . F 2 -7.414 20.053 41.2 0.75 66.02 ? C4B NAD 401 B 1 HETATM 7 O O4B NAD . . . F 2 -8.06 18.795 41.409 0.75 65.95 ? O4B NAD 401 B 1 HETATM 8 C C3B NAD . . . F 2 -8.462 21.084 40.739 0.75 65.14 ? C3B NAD 401 B 1 HETATM 9 O O3B NAD . . . F 2 -8.33 21.139 39.356 0.75 60.72 ? O3B NAD 401 B 1 HETATM 10 C C2B NAD . . . F 2 -9.774 20.432 41.192 0.75 74.18 ? C2B NAD 401 B 1 HETATM 11 O O2B NAD . . . F 2 -10.824 20.705 40.322 0.75 78.04 ? O2B NAD 401 B 1 HETATM 12 C C1B NAD . . . F 2 -9.427 18.914 41.045 0.75 71.06 ? C1B NAD 401 B 1 HETATM 13 N N9A NAD . . . F 2 -10.171 18.101 42.018 0.75 74.84 ? N9A NAD 401 B 1 HETATM 14 C C8A NAD . . . F 2 -10.328 18.269 43.408 0.75 73.85 ? C8A NAD 401 B 1 HETATM 15 N N7A NAD . . . F 2 -11.079 17.319 43.964 0.75 76.44 ? N7A NAD 401 B 1 HETATM 16 C C5A NAD . . . F 2 -11.437 16.48 42.891 0.75 74.77 ? C5A NAD 401 B 1 HETATM 17 C C6A NAD . . . F 2 -12.222 15.296 42.816 0.75 70.94 ? C6A NAD 401 B 1 HETATM 18 N N6A NAD . . . F 2 -12.788 14.787 43.948 0.75 70.83 ? N6A NAD 401 B 1 HETATM 19 N N1A NAD . . . F 2 -12.412 14.667 41.612 0.75 66.12 ? N1A NAD 401 B 1 HETATM 20 C C2A NAD . . . F 2 -11.812 15.24 40.522 0.75 72.13 ? C2A NAD 401 B 1 HETATM 21 N N3A NAD . . . F 2 -11.043 16.35 40.437 0.75 72.72 ? N3A NAD 401 B 1 HETATM 22 C C4A NAD . . . F 2 -10.877 16.952 41.665 0.75 74.43 ? C4A NAD 401 B 1 HETATM 23 O O3 NAD . . . F 2 -3.886 20.555 43.73 0.75 87.18 ? O3 NAD 401 B 1 HETATM 24 P PN NAD . . . F 2 -2.543 20.971 42.996 0.75 79.64 ? PN NAD 401 B 1 HETATM 25 O O1N NAD . . . F 2 -2.591 21.69 41.672 0.75 80.31 ? O1N NAD 401 B 1 HETATM 26 O O2N NAD . . . F 2 -1.666 21.192 44.177 0.75 82.17 ? O2N NAD 401 B 1 HETATM 27 O O5D NAD . . . F 2 -1.78 19.451 42.453 0.75 69.27 ? O5D NAD 401 B 1 HETATM 28 C C5D NAD . . . F 2 -2.765 18.697 41.887 0.75 66.32 ? C5D NAD 401 B 1 HETATM 29 C C4D NAD . . . F 2 -2.25 17.285 41.726 0.75 68.49 ? C4D NAD 401 B 1 HETATM 30 O O4D NAD . . . F 2 -0.862 17.348 41.346 0.75 73.54 ? O4D NAD 401 B 1 HETATM 31 C C3D NAD . . . F 2 -2.302 16.606 43.129 0.75 69.12 ? C3D NAD 401 B 1 HETATM 32 O O3D NAD . . . F 2 -2.929 15.385 42.94 0.75 67.8 ? O3D NAD 401 B 1 HETATM 33 C C2D NAD . . . F 2 -0.818 16.434 43.486 0.75 68.42 ? C2D NAD 401 B 1 HETATM 34 O O2D NAD . . . F 2 -0.522 15.229 44.103 0.75 64.6 ? O2D NAD 401 B 1 HETATM 35 C C1D NAD . . . F 2 -0.238 16.327 42.056 0.75 70.7 ? C1D NAD 401 B 1 HETATM 36 N N1N NAD . . . F 2 1.241 16.645 42.088 0.75 68.3 ? N1N NAD 401 B 1 HETATM 37 C C2N NAD . . . F 2 2.048 15.797 41.384 0.75 70.39 ? C2N NAD 401 B 1 HETATM 38 C C3N NAD . . . F 2 3.421 16.024 41.366 0.75 72.63 ? C3N NAD 401 B 1 HETATM 39 C C7N NAD . . . F 2 4.233 15.055 40.573 0.75 72.1 ? C7N NAD 401 B 1 HETATM 40 O O7N NAD . . . F 2 5.458 15.075 40.584 0.75 71.06 ? O7N NAD 401 B 1 HETATM 41 N N7N NAD . . . F 2 3.536 14.139 39.822 0.75 69.22 ? N7N NAD 401 B 1 HETATM 42 C C4N NAD . . . F 2 3.95 17.109 42.066 0.75 69.3 ? C4N NAD 401 B 1 HETATM 43 C C5N NAD . . . F 2 3.104 17.954 42.774 0.75 68.31 ? C5N NAD 401 B 1 HETATM 44 C C6N NAD . . . F 2 1.727 17.716 42.784 0.75 67.09 ? C6N NAD 401 B 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #