data_6RQA # _model_server_result.job_id M7kXsug6Futtr7Hc4elmMA _model_server_result.datetime_utc '2024-12-21 16:46:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rqa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 6RQA # _exptl.entry_id 6RQA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 556.353 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Tb-Xo4 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RQA _cell.length_a 50.386 _cell.length_b 72.407 _cell.length_c 164.266 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 69 A ASP 48 1_555 D TB TB . A TB 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc2 A OD2 ASP 69 A ASP 48 1_555 D TB TB . A TB 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 A OE1 GLU 184 A GLU 163 1_555 E TB TB . A TB 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc4 A OE2 GLU 184 A GLU 163 1_555 E TB TB . A TB 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc5 B OD1 ASP 69 B ASP 48 1_555 G TB 7MT . B 7MT 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc6 B OD2 ASP 69 B ASP 48 1_555 G TB 7MT . B 7MT 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? # _chem_comp.formula 'C20 H23 N5 O4 Tb 5' _chem_comp.formula_weight 556.353 _chem_comp.id 7MT _chem_comp.mon_nstd_flag . _chem_comp.name Tb-Xo4 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 7MT doub 1 n y C21 C22 7MT sing 2 n y C10 C13 7MT doub 3 n y C10 C30 7MT sing 4 n n C10 N17 7MT sing 5 n y C11 C19 7MT doub 6 n y C11 C29 7MT sing 7 n n C11 N23 7MT sing 8 n y C01 C03 7MT sing 9 n n C01 N02 7MT sing 10 n n C03 N09 7MT sing 11 n n C04 C05 7MT sing 12 n n C04 N02 7MT sing 13 n n C05 N06 7MT sing 14 n n C07 C08 7MT sing 15 n n C07 N06 7MT sing 16 n n C08 N09 7MT sing 17 n n C13 C14 7MT sing 18 n y C14 C15 7MT doub 19 n y C15 C16 7MT sing 20 n y C16 C18 7MT sing 21 n n C16 N17 7MT doub 22 n y C18 O27 7MT sing 23 n n C18 O28 7MT doub 24 n n C19 C20 7MT sing 25 n y C22 C24 7MT sing 26 n n C22 N23 7MT doub 27 n y C24 O25 7MT doub 28 n n C24 O26 7MT sing 29 n n C29 N09 7MT sing 30 n n C30 N02 7MT sing 31 n n N23 TB 7MT sing 32 n n C21 H211 7MT sing 33 n n C01 H012 7MT sing 34 n n C01 H011 7MT sing 35 n n C03 H031 7MT sing 36 n n C03 H032 7MT sing 37 n n C04 H042 7MT sing 38 n n C04 H041 7MT sing 39 n n C05 H051 7MT sing 40 n n C05 H052 7MT sing 41 n n C07 H072 7MT sing 42 n n C07 H071 7MT sing 43 n n C08 H081 7MT sing 44 n n C08 H082 7MT sing 45 n n C13 H131 7MT sing 46 n n C14 H141 7MT sing 47 n n C15 H151 7MT sing 48 n n C19 H191 7MT sing 49 n n C20 H201 7MT sing 50 n n C29 H292 7MT sing 51 n n C29 H291 7MT sing 52 n n C30 H302 7MT sing 53 n n C30 H301 7MT sing 54 n n N02 TB 7MT sing 55 n n N06 TB 7MT sing 56 n n N06 H061 7MT sing 57 n n N09 TB 7MT sing 58 n n O26 TB 7MT sing 59 n n N17 TB 7MT sing 60 n n O27 TB 7MT sing 61 n n # _atom_sites.entry_id 6RQA _atom_sites.fract_transf_matrix[1][1] 0.019847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006088 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 401 350 NAD NAD . D 3 TB A 1 402 370 TB TB . E 3 TB A 1 403 380 TB TB . F 2 NAD B 1 401 350 NAD NAD . G 4 7MT B 1 402 360 7MT 7MT . H 5 HOH A 1 501 41 HOH HOH . H 5 HOH A 2 502 21 HOH HOH . H 5 HOH A 3 503 127 HOH HOH . H 5 HOH A 4 504 49 HOH HOH . H 5 HOH A 5 505 61 HOH HOH . H 5 HOH A 6 506 95 HOH HOH . H 5 HOH A 7 507 97 HOH HOH . H 5 HOH A 8 508 72 HOH HOH . H 5 HOH A 9 509 13 HOH HOH . H 5 HOH A 10 510 46 HOH HOH . H 5 HOH A 11 511 123 HOH HOH . H 5 HOH A 12 512 119 HOH HOH . H 5 HOH A 13 513 3 HOH HOH . H 5 HOH A 14 514 68 HOH HOH . H 5 HOH A 15 515 85 HOH HOH . H 5 HOH A 16 516 10 HOH HOH . H 5 HOH A 17 517 16 HOH HOH . H 5 HOH A 18 518 118 HOH HOH . H 5 HOH A 19 519 94 HOH HOH . H 5 HOH A 20 520 117 HOH HOH . H 5 HOH A 21 521 2 HOH HOH . H 5 HOH A 22 522 33 HOH HOH . H 5 HOH A 23 523 6 HOH HOH . H 5 HOH A 24 524 7 HOH HOH . H 5 HOH A 25 525 25 HOH HOH . H 5 HOH A 26 526 87 HOH HOH . H 5 HOH A 27 527 27 HOH HOH . H 5 HOH A 28 528 102 HOH HOH . H 5 HOH A 29 529 108 HOH HOH . H 5 HOH A 30 530 19 HOH HOH . H 5 HOH A 31 531 12 HOH HOH . H 5 HOH A 32 532 34 HOH HOH . H 5 HOH A 33 533 38 HOH HOH . H 5 HOH A 34 534 45 HOH HOH . H 5 HOH A 35 535 106 HOH HOH . H 5 HOH A 36 536 125 HOH HOH . H 5 HOH A 37 537 15 HOH HOH . H 5 HOH A 38 538 59 HOH HOH . H 5 HOH A 39 539 81 HOH HOH . H 5 HOH A 40 540 103 HOH HOH . H 5 HOH A 41 541 31 HOH HOH . H 5 HOH A 42 542 51 HOH HOH . H 5 HOH A 43 543 73 HOH HOH . H 5 HOH A 44 544 67 HOH HOH . H 5 HOH A 45 545 22 HOH HOH . H 5 HOH A 46 546 63 HOH HOH . H 5 HOH A 47 547 83 HOH HOH . H 5 HOH A 48 548 9 HOH HOH . H 5 HOH A 49 549 52 HOH HOH . H 5 HOH A 50 550 109 HOH HOH . H 5 HOH A 51 551 78 HOH HOH . H 5 HOH A 52 552 77 HOH HOH . H 5 HOH A 53 553 112 HOH HOH . H 5 HOH A 54 554 32 HOH HOH . H 5 HOH A 55 555 30 HOH HOH . H 5 HOH A 56 556 98 HOH HOH . H 5 HOH A 57 557 36 HOH HOH . H 5 HOH A 58 558 105 HOH HOH . H 5 HOH A 59 559 44 HOH HOH . H 5 HOH A 60 560 115 HOH HOH . H 5 HOH A 61 561 53 HOH HOH . H 5 HOH A 62 562 116 HOH HOH . H 5 HOH A 63 563 126 HOH HOH . H 5 HOH A 64 564 58 HOH HOH . H 5 HOH A 65 565 37 HOH HOH . I 5 HOH B 1 501 120 HOH HOH . I 5 HOH B 2 502 35 HOH HOH . I 5 HOH B 3 503 50 HOH HOH . I 5 HOH B 4 504 11 HOH HOH . I 5 HOH B 5 505 76 HOH HOH . I 5 HOH B 6 506 4 HOH HOH . I 5 HOH B 7 507 5 HOH HOH . I 5 HOH B 8 508 55 HOH HOH . I 5 HOH B 9 509 47 HOH HOH . I 5 HOH B 10 510 42 HOH HOH . I 5 HOH B 11 511 56 HOH HOH . I 5 HOH B 12 512 57 HOH HOH . I 5 HOH B 13 513 65 HOH HOH . I 5 HOH B 14 514 69 HOH HOH . I 5 HOH B 15 515 18 HOH HOH . I 5 HOH B 16 516 1 HOH HOH . I 5 HOH B 17 517 8 HOH HOH . I 5 HOH B 18 518 20 HOH HOH . I 5 HOH B 19 519 86 HOH HOH . I 5 HOH B 20 520 29 HOH HOH . I 5 HOH B 21 521 66 HOH HOH . I 5 HOH B 22 522 82 HOH HOH . I 5 HOH B 23 523 75 HOH HOH . I 5 HOH B 24 524 14 HOH HOH . I 5 HOH B 25 525 71 HOH HOH . I 5 HOH B 26 526 89 HOH HOH . I 5 HOH B 27 527 122 HOH HOH . I 5 HOH B 28 528 113 HOH HOH . I 5 HOH B 29 529 48 HOH HOH . I 5 HOH B 30 530 43 HOH HOH . I 5 HOH B 31 531 23 HOH HOH . I 5 HOH B 32 532 28 HOH HOH . I 5 HOH B 33 533 104 HOH HOH . I 5 HOH B 34 534 84 HOH HOH . I 5 HOH B 35 535 26 HOH HOH . I 5 HOH B 36 536 111 HOH HOH . I 5 HOH B 37 537 70 HOH HOH . I 5 HOH B 38 538 110 HOH HOH . I 5 HOH B 39 539 88 HOH HOH . I 5 HOH B 40 540 24 HOH HOH . I 5 HOH B 41 541 17 HOH HOH . I 5 HOH B 42 542 107 HOH HOH . I 5 HOH B 43 543 101 HOH HOH . I 5 HOH B 44 544 92 HOH HOH . I 5 HOH B 45 545 96 HOH HOH . I 5 HOH B 46 546 80 HOH HOH . I 5 HOH B 47 547 39 HOH HOH . I 5 HOH B 48 548 99 HOH HOH . I 5 HOH B 49 549 74 HOH HOH . I 5 HOH B 50 550 93 HOH HOH . I 5 HOH B 51 551 64 HOH HOH . I 5 HOH B 52 552 100 HOH HOH . I 5 HOH B 53 553 54 HOH HOH . I 5 HOH B 54 554 62 HOH HOH . I 5 HOH B 55 555 90 HOH HOH . I 5 HOH B 56 556 40 HOH HOH . I 5 HOH B 57 557 79 HOH HOH . I 5 HOH B 58 558 91 HOH HOH . I 5 HOH B 59 559 114 HOH HOH . I 5 HOH B 60 560 124 HOH HOH . I 5 HOH B 61 561 121 HOH HOH . I 5 HOH B 62 562 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 7MT . . . G 4 -8.765 11.59 61.779 0.95 51.95 ? C21 7MT 402 B 1 HETATM 2 C C10 7MT . . . G 4 -7.998 15.192 66.81 0.95 57.95 ? C10 7MT 402 B 1 HETATM 3 C C11 7MT . . . G 4 -8.775 14.257 61.218 0.95 44.3 ? C11 7MT 402 B 1 HETATM 4 C C01 7MT . . . G 4 -10.307 15.666 63.884 0.95 34.31 ? C01 7MT 402 B 1 HETATM 5 C C03 7MT . . . G 4 -10.19 16.597 62.653 0.95 33.82 ? C03 7MT 402 B 1 HETATM 6 C C04 7MT . . . G 4 -9.578 17.34 65.427 0.95 51.26 ? C04 7MT 402 B 1 HETATM 7 C C05 7MT . . . G 4 -8.326 18.21 65.344 0.95 49.57 ? C05 7MT 402 B 1 HETATM 8 C C07 7MT . . . G 4 -8.18 18.755 63.041 0.95 55.41 ? C07 7MT 402 B 1 HETATM 9 C C08 7MT . . . G 4 -8.403 17.937 61.768 0.95 45.67 ? C08 7MT 402 B 1 HETATM 10 C C13 7MT . . . G 4 -8.032 15.145 68.198 0.95 60.92 ? C13 7MT 402 B 1 HETATM 11 C C14 7MT . . . G 4 -6.878 15.289 68.899 0.95 58.94 ? C14 7MT 402 B 1 HETATM 12 C C15 7MT . . . G 4 -5.699 15.478 68.242 0.95 48.5 ? C15 7MT 402 B 1 HETATM 13 C C16 7MT . . . G 4 -5.681 15.522 66.849 0.95 50.86 ? C16 7MT 402 B 1 HETATM 14 C C18 7MT . . . G 4 -4.372 15.733 66.082 0.95 56.8 ? C18 7MT 402 B 1 HETATM 15 C C19 7MT . . . G 4 -9.448 13.373 60.391 0.95 47.14 ? C19 7MT 402 B 1 HETATM 16 C C20 7MT . . . G 4 -9.44 12.041 60.678 0.95 52.33 ? C20 7MT 402 B 1 HETATM 17 C C22 7MT . . . G 4 -8.09 12.494 62.603 0.95 57.41 ? C22 7MT 402 B 1 HETATM 18 C C24 7MT . . . G 4 -7.336 11.99 63.834 0.95 53.61 ? C24 7MT 402 B 1 HETATM 19 C C29 7MT . . . G 4 -8.792 15.767 60.88 0.95 44.67 ? C29 7MT 402 B 1 HETATM 20 C C30 7MT . . . G 4 -9.302 15.033 65.987 0.95 49.09 ? C30 7MT 402 B 1 HETATM 21 N N02 7MT . . . G 4 -9.285 16.027 64.889 0.95 46.79 ? N02 7MT 402 B 1 HETATM 22 N N06 7MT . . . G 4 -7.625 17.916 64.087 0.95 52.54 ? N06 7MT 402 B 1 HETATM 23 N N09 7MT . . . G 4 -8.808 16.57 62.111 0.95 44.02 ? N09 7MT 402 B 1 HETATM 24 N N17 7MT . . . G 4 -6.834 15.376 66.158 0.95 45.84 ? N17 7MT 402 B 1 HETATM 25 N N23 7MT . . . G 4 -8.105 13.825 62.306 0.95 59.39 ? N23 7MT 402 B 1 HETATM 26 O O25 7MT . . . G 4 -7.324 10.764 64.106 0.95 55.48 ? O25 7MT 402 B 1 HETATM 27 O O26 7MT . . . G 4 -6.728 12.798 64.578 0.95 57.81 ? O26 7MT 402 B 1 HETATM 28 O O27 7MT . . . G 4 -4.389 15.768 64.823 0.95 46.68 ? O27 7MT 402 B 1 HETATM 29 O O28 7MT . . . G 4 -3.287 15.869 66.706 0.95 64.58 ? O28 7MT 402 B 1 HETATM 30 TB TB 7MT . . . G 4 -6.98 15.436 63.652 0.95 43.24 ? TB 7MT 402 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #