data_6RQF # _model_server_result.job_id yuLyGqN_n0xEP2_5yOWDOA _model_server_result.datetime_utc '2025-03-06 09:31:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":101}' # _entry.id 6RQF # _exptl.entry_id 6RQF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 763.1 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RQF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 W N N ? 14 DA N N ? 14 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 112 L CYS 112 1_555 D SG CYS 127 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 L SG CYS 112 D CYS 112 1_555 L SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A SG CYS 35 I CYS 35 1_555 S CAB HEC . I HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc1 A NE2 HIS 86 I HIS 86 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc2 A NE2 HIS 100 I HIS 100 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 A NE2 HIS 187 I HIS 187 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc4 A NE2 HIS 202 I HIS 202 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc5 C N TYR 1 K TYR 1 1_555 Z FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? covale ? covale2 C SG CYS 21 K CYS 21 1_555 Z CBB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? covale ? covale3 C SG CYS 21 K CYS 21 1_555 Z CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale4 C SG CYS 24 K CYS 24 1_555 Z CBC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? metalc ? metalc6 D SG CYS 107 L CYS 107 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 D ND1 HIS 109 L HIS 109 1_555 BA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 D SG CYS 125 L CYS 125 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc9 I NE2 HIS 86 A HIS 86 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc10 I NE2 HIS 100 A HIS 100 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc11 I NE2 HIS 187 A HIS 187 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc12 I NE2 HIS 202 A HIS 202 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc13 K N TYR 1 C TYR 1 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc14 K NE2 HIS 25 C HIS 25 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc15 L SG CYS 107 D CYS 107 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc16 L ND1 HIS 109 D HIS 109 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc17 L SG CYS 125 D CYS 125 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc18 L ND1 HIS 128 D HIS 128 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C42 H85 N O8 P 1' _chem_comp.formula_weight 763.1 _chem_comp.id 6PL _chem_comp.mon_nstd_flag . _chem_comp.name '(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-PALMITOYL-2-STEAROYL-SN-GLYCERO-3-PHOSPHOCHOLINE # _atom_sites.entry_id 6RQF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 HEM I 1 301 6 HEM HEM . R 9 HEM I 1 302 7 HEM HEM . S 10 HEC I 1 303 8 HEC HEM . T 11 CLA I 1 304 1 CLA CLA . U 12 BCR I 1 305 2 BCR BCR . V 13 PL9 I 1 306 2 PL9 PL9 . W 14 6PL I 1 307 3 6PL 6PL . X 15 LMG J 1 201 1 LMG LMG . Y 16 PGV J 1 202 2 PGV PGV . Z 10 HEC K 1 301 2 HEC HEM . AA 16 PGV K 1 302 4 PGV PGV . BA 17 FES L 1 201 2 FES FES . CA 18 SQD L 1 202 1 SQD SQD . DA 14 6PL N 1 101 1 6PL 6PL . EA 9 HEM A 1 301 3 HEM HEM . FA 9 HEM A 1 302 4 HEM HEM . GA 10 HEC A 1 303 5 HEC HEM . HA 11 CLA A 1 304 2 CLA CLA . IA 13 PL9 A 1 305 1 PL9 PL9 . JA 13 PL9 A 1 306 3 PL9 PL9 . KA 18 SQD A 1 307 3 SQD SQD . LA 16 PGV A 1 308 3 PGV PGV . MA 16 PGV B 1 201 1 PGV PGV . NA 10 HEC C 1 301 1 HEC HEM . OA 18 SQD C 1 302 2 SQD SQD . PA 17 FES D 1 201 1 FES FES . QA 14 6PL E 1 101 2 6PL 6PL . RA 15 LMG F 1 101 2 LMG LMG . SA 12 BCR H 1 101 1 BCR BCR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 6PL . . . DA 14 144.337 134.648 176.765 1 62.21 ? C26 6PL 101 N 1 HETATM 2 C C25 6PL . . . DA 14 143.86 134.183 178.12 1 62.21 ? C25 6PL 101 N 1 HETATM 3 C C24 6PL . . . DA 14 142.356 133.97 178.11 1 62.21 ? C24 6PL 101 N 1 HETATM 4 C C23 6PL . . . DA 14 141.965 132.778 177.252 1 62.21 ? C23 6PL 101 N 1 HETATM 5 C C22 6PL . . . DA 14 140.537 132.95 176.759 1 62.21 ? C22 6PL 101 N 1 HETATM 6 C C21 6PL . . . DA 14 140.142 131.832 175.809 1 62.21 ? C21 6PL 101 N 1 HETATM 7 C C20 6PL . . . DA 14 139.515 130.695 176.594 1 62.21 ? C20 6PL 101 N 1 HETATM 8 C C19 6PL . . . DA 14 140.088 129.368 176.133 1 62.21 ? C19 6PL 101 N 1 HETATM 9 C C18 6PL . . . DA 14 139.515 128.976 174.783 1 62.21 ? C18 6PL 101 N 1 HETATM 10 C C17 6PL . . . DA 14 138.044 128.621 174.915 1 62.21 ? C17 6PL 101 N 1 HETATM 11 C C16 6PL . . . DA 14 137.668 127.647 173.812 1 62.21 ? C16 6PL 101 N 1 HETATM 12 C C15 6PL . . . DA 14 136.168 127.41 173.771 1 62.21 ? C15 6PL 101 N 1 HETATM 13 C C14 6PL . . . DA 14 135.448 128.563 173.095 1 62.21 ? C14 6PL 101 N 1 HETATM 14 C C13 6PL . . . DA 14 134.007 128.172 172.822 1 62.21 ? C13 6PL 101 N 1 HETATM 15 C C12 6PL . . . DA 14 133.934 127.117 171.73 1 62.21 ? C12 6PL 101 N 1 HETATM 16 C C11 6PL . . . DA 14 133.133 125.915 172.198 1 62.21 ? C11 6PL 101 N 1 HETATM 17 O O11 6PL . . . DA 14 134.023 125.003 172.845 1 62.21 ? O11 6PL 101 N 1 HETATM 18 O O3 6PL . . . DA 14 132.556 125.271 171.071 1 62.21 ? O3 6PL 101 N 1 HETATM 19 C C3 6PL . . . DA 14 131.256 124.798 171.391 1 62.21 ? C3 6PL 101 N 1 HETATM 20 C C2 6PL . . . DA 14 131.088 123.372 170.888 1 62.21 ? C2 6PL 101 N 1 HETATM 21 C C1 6PL . . . DA 14 130.834 123.416 169.385 1 62.21 ? C1 6PL 101 N 1 HETATM 22 O O3P 6PL . . . DA 14 130.681 122.095 168.872 1 62.21 ? O3P 6PL 101 N 1 HETATM 23 P P 6PL . . . DA 14 129.331 121.656 168.118 1 62.21 ? P 6PL 101 N 1 HETATM 24 O O1P 6PL . . . DA 14 129.416 122.078 166.672 1 62.21 ? O1P 6PL 101 N 1 HETATM 25 O O2P 6PL . . . DA 14 129.203 120.156 168.217 1 62.21 ? O2P 6PL 101 N 1 HETATM 26 O O4P 6PL . . . DA 14 128.061 122.354 168.822 1 62.21 ? O4P 6PL 101 N 1 HETATM 27 C C4 6PL . . . DA 14 126.806 122.483 168.151 1 62.21 ? C4 6PL 101 N 1 HETATM 28 C C5 6PL . . . DA 14 126.716 123.84 167.455 1 62.21 ? C5 6PL 101 N 1 HETATM 29 N N 6PL . . . DA 14 125.367 124.12 166.928 1 62.21 ? N 6PL 101 N 1 HETATM 30 C C7 6PL . . . DA 14 125.382 125.421 166.249 1 62.21 ? C7 6PL 101 N 1 HETATM 31 C C8 6PL . . . DA 14 124.391 124.173 168.025 1 62.21 ? C8 6PL 101 N 1 HETATM 32 C C6 6PL . . . DA 14 124.957 123.093 165.959 1 62.21 ? C6 6PL 101 N 1 HETATM 33 O O2 6PL . . . DA 14 129.981 122.756 171.544 1 62.21 ? O2 6PL 101 N 1 HETATM 34 C C31 6PL . . . DA 14 130.204 122.586 172.942 1 62.21 ? C31 6PL 101 N 1 HETATM 35 O O31 6PL . . . DA 14 128.968 122.82 173.62 1 62.21 ? O31 6PL 101 N 1 HETATM 36 C C32 6PL . . . DA 14 130.708 121.177 173.224 1 62.21 ? C32 6PL 101 N 1 HETATM 37 C C33 6PL . . . DA 14 131.694 121.148 174.387 1 62.21 ? C33 6PL 101 N 1 HETATM 38 C C34 6PL . . . DA 14 131.003 121.34 175.731 1 62.21 ? C34 6PL 101 N 1 HETATM 39 C C35 6PL . . . DA 14 132.003 121.362 176.879 1 62.21 ? C35 6PL 101 N 1 HETATM 40 C C36 6PL . . . DA 14 131.269 121.324 178.212 1 62.21 ? C36 6PL 101 N 1 HETATM 41 C C37 6PL . . . DA 14 132.239 121.132 179.368 1 62.21 ? C37 6PL 101 N 1 HETATM 42 C C38 6PL . . . DA 14 131.567 120.446 180.551 1 62.21 ? C38 6PL 101 N 1 HETATM 43 C C39 6PL . . . DA 14 131.265 121.443 181.658 1 62.21 ? C39 6PL 101 N 1 HETATM 44 C C40 6PL . . . DA 14 130.584 120.768 182.842 1 62.21 ? C40 6PL 101 N 1 HETATM 45 C C41 6PL . . . DA 14 130.134 121.809 183.86 1 62.21 ? C41 6PL 101 N 1 HETATM 46 C C42 6PL . . . DA 14 129.312 121.195 184.986 1 62.21 ? C42 6PL 101 N 1 HETATM 47 C C43 6PL . . . DA 14 130.181 120.344 185.9 1 62.21 ? C43 6PL 101 N 1 HETATM 48 C C44 6PL . . . DA 14 131.225 121.198 186.604 1 62.21 ? C44 6PL 101 N 1 HETATM 49 C C45 6PL . . . DA 14 132.116 120.346 187.497 1 62.21 ? C45 6PL 101 N 1 HETATM 50 C C46 6PL . . . DA 14 131.392 119.942 188.773 1 62.21 ? C46 6PL 101 N 1 HETATM 51 C C47 6PL . . . DA 14 131.256 121.125 189.723 1 62.21 ? C47 6PL 101 N 1 HETATM 52 C C48 6PL . . . DA 14 132.573 121.446 190.393 1 62.21 ? C48 6PL 101 N 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 52 #