data_6RQF # _model_server_result.job_id akxTg2eBh3nAq870pWFR3Q _model_server_result.datetime_utc '2025-03-06 09:16:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6rqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"QA","auth_seq_id":101}' # _entry.id 6RQF # _exptl.entry_id 6RQF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 763.1 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6RQF _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6RQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 W N N ? 14 DA N N ? 14 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 112 L CYS 112 1_555 D SG CYS 127 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 L SG CYS 112 D CYS 112 1_555 L SG CYS 127 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A SG CYS 35 I CYS 35 1_555 S CAB HEC . I HEC 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? metalc ? metalc1 A NE2 HIS 86 I HIS 86 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc2 A NE2 HIS 100 I HIS 100 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc3 A NE2 HIS 187 I HIS 187 1_555 Q FE HEM . I HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc4 A NE2 HIS 202 I HIS 202 1_555 R FE HEM . I HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc5 C N TYR 1 K TYR 1 1_555 Z FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? covale ? covale2 C SG CYS 21 K CYS 21 1_555 Z CBB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? covale ? covale3 C SG CYS 21 K CYS 21 1_555 Z CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale4 C SG CYS 24 K CYS 24 1_555 Z CBC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.71 ? metalc ? metalc6 D SG CYS 107 L CYS 107 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 D ND1 HIS 109 L HIS 109 1_555 BA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 D SG CYS 125 L CYS 125 1_555 BA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc9 I NE2 HIS 86 A HIS 86 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc10 I NE2 HIS 100 A HIS 100 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc11 I NE2 HIS 187 A HIS 187 1_555 EA FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc12 I NE2 HIS 202 A HIS 202 1_555 FA FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc13 K N TYR 1 C TYR 1 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc14 K NE2 HIS 25 C HIS 25 1_555 NA FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc15 L SG CYS 107 D CYS 107 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc16 L ND1 HIS 109 D HIS 109 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc17 L SG CYS 125 D CYS 125 1_555 PA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc18 L ND1 HIS 128 D HIS 128 1_555 PA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? # _chem_comp.formula 'C42 H85 N O8 P 1' _chem_comp.formula_weight 763.1 _chem_comp.id 6PL _chem_comp.mon_nstd_flag . _chem_comp.name '(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-PALMITOYL-2-STEAROYL-SN-GLYCERO-3-PHOSPHOCHOLINE # _atom_sites.entry_id 6RQF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 HEM I 1 301 6 HEM HEM . R 9 HEM I 1 302 7 HEM HEM . S 10 HEC I 1 303 8 HEC HEM . T 11 CLA I 1 304 1 CLA CLA . U 12 BCR I 1 305 2 BCR BCR . V 13 PL9 I 1 306 2 PL9 PL9 . W 14 6PL I 1 307 3 6PL 6PL . X 15 LMG J 1 201 1 LMG LMG . Y 16 PGV J 1 202 2 PGV PGV . Z 10 HEC K 1 301 2 HEC HEM . AA 16 PGV K 1 302 4 PGV PGV . BA 17 FES L 1 201 2 FES FES . CA 18 SQD L 1 202 1 SQD SQD . DA 14 6PL N 1 101 1 6PL 6PL . EA 9 HEM A 1 301 3 HEM HEM . FA 9 HEM A 1 302 4 HEM HEM . GA 10 HEC A 1 303 5 HEC HEM . HA 11 CLA A 1 304 2 CLA CLA . IA 13 PL9 A 1 305 1 PL9 PL9 . JA 13 PL9 A 1 306 3 PL9 PL9 . KA 18 SQD A 1 307 3 SQD SQD . LA 16 PGV A 1 308 3 PGV PGV . MA 16 PGV B 1 201 1 PGV PGV . NA 10 HEC C 1 301 1 HEC HEM . OA 18 SQD C 1 302 2 SQD SQD . PA 17 FES D 1 201 1 FES FES . QA 14 6PL E 1 101 2 6PL 6PL . RA 15 LMG F 1 101 2 LMG LMG . SA 12 BCR H 1 101 1 BCR BCR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C26 6PL . . . QA 14 198.138 187.945 168.688 1 60.4 ? C26 6PL 101 E 1 HETATM 2 C C25 6PL . . . QA 14 198.707 186.57 168.962 1 60.4 ? C25 6PL 101 E 1 HETATM 3 C C24 6PL . . . QA 14 197.998 185.914 170.14 1 60.4 ? C24 6PL 101 E 1 HETATM 4 C C23 6PL . . . QA 14 196.512 185.71 169.862 1 60.4 ? C23 6PL 101 E 1 HETATM 5 C C22 6PL . . . QA 14 196.274 184.489 168.982 1 60.4 ? C22 6PL 101 E 1 HETATM 6 C C21 6PL . . . QA 14 194.819 184.036 169.041 1 60.4 ? C21 6PL 101 E 1 HETATM 7 C C20 6PL . . . QA 14 193.914 184.939 168.215 1 60.4 ? C20 6PL 101 E 1 HETATM 8 C C19 6PL . . . QA 14 192.46 184.523 168.384 1 60.4 ? C19 6PL 101 E 1 HETATM 9 C C18 6PL . . . QA 14 191.552 185.151 167.333 1 60.4 ? C18 6PL 101 E 1 HETATM 10 C C17 6PL . . . QA 14 191.241 184.146 166.23 1 60.4 ? C17 6PL 101 E 1 HETATM 11 C C16 6PL . . . QA 14 190.088 184.609 165.349 1 60.4 ? C16 6PL 101 E 1 HETATM 12 C C15 6PL . . . QA 14 188.856 184.941 166.178 1 60.4 ? C15 6PL 101 E 1 HETATM 13 C C14 6PL . . . QA 14 187.578 184.749 165.376 1 60.4 ? C14 6PL 101 E 1 HETATM 14 C C13 6PL . . . QA 14 187.598 185.548 164.082 1 60.4 ? C13 6PL 101 E 1 HETATM 15 C C12 6PL . . . QA 14 186.242 185.498 163.392 1 60.4 ? C12 6PL 101 E 1 HETATM 16 C C11 6PL . . . QA 14 186.282 186.208 162.049 1 60.4 ? C11 6PL 101 E 1 HETATM 17 O O11 6PL . . . QA 14 184.993 186.766 161.783 1 60.4 ? O11 6PL 101 E 1 HETATM 18 O O3 6PL . . . QA 14 186.649 185.309 161.004 1 60.4 ? O3 6PL 101 E 1 HETATM 19 C C3 6PL . . . QA 14 185.548 184.545 160.517 1 60.4 ? C3 6PL 101 E 1 HETATM 20 C C2 6PL . . . QA 14 185.592 184.491 158.989 1 60.4 ? C2 6PL 101 E 1 HETATM 21 C C1 6PL . . . QA 14 184.894 185.716 158.41 1 60.4 ? C1 6PL 101 E 1 HETATM 22 O O3P 6PL . . . QA 14 185.1 185.779 157.002 1 60.4 ? O3P 6PL 101 E 1 HETATM 23 P P 6PL . . . QA 14 183.85 185.844 155.99 1 60.4 ? P 6PL 101 E 1 HETATM 24 O O1P 6PL . . . QA 14 182.768 186.681 156.623 1 60.4 ? O1P 6PL 101 E 1 HETATM 25 O O2P 6PL . . . QA 14 183.352 184.449 155.703 1 60.4 ? O2P 6PL 101 E 1 HETATM 26 O O4P 6PL . . . QA 14 184.301 186.538 154.612 1 60.4 ? O4P 6PL 101 E 1 HETATM 27 C C4 6PL . . . QA 14 183.77 186.106 153.36 1 60.4 ? C4 6PL 101 E 1 HETATM 28 C C5 6PL . . . QA 14 184.002 187.19 152.307 1 60.4 ? C5 6PL 101 E 1 HETATM 29 N N 6PL . . . QA 14 185.065 186.841 151.348 1 60.4 ? N 6PL 101 E 1 HETATM 30 C C7 6PL . . . QA 14 185.218 187.939 150.386 1 60.4 ? C7 6PL 101 E 1 HETATM 31 C C8 6PL . . . QA 14 184.71 185.615 150.62 1 60.4 ? C8 6PL 101 E 1 HETATM 32 C C6 6PL . . . QA 14 186.353 186.653 152.031 1 60.4 ? C6 6PL 101 E 1 HETATM 33 O O2 6PL . . . QA 14 185.004 183.288 158.48 1 60.4 ? O2 6PL 101 E 1 HETATM 34 C C31 6PL . . . QA 14 183.658 183.049 158.894 1 60.4 ? C31 6PL 101 E 1 HETATM 35 O O31 6PL . . . QA 14 182.778 183.206 157.777 1 60.4 ? O31 6PL 101 E 1 HETATM 36 C C32 6PL . . . QA 14 183.547 181.622 159.404 1 60.4 ? C32 6PL 101 E 1 HETATM 37 C C33 6PL . . . QA 14 182.316 181.44 160.276 1 60.4 ? C33 6PL 101 E 1 HETATM 38 C C34 6PL . . . QA 14 182.278 180.023 160.823 1 60.4 ? C34 6PL 101 E 1 HETATM 39 C C35 6PL . . . QA 14 181.199 179.868 161.88 1 60.4 ? C35 6PL 101 E 1 HETATM 40 C C36 6PL . . . QA 14 181.191 178.439 162.393 1 60.4 ? C36 6PL 101 E 1 HETATM 41 C C37 6PL . . . QA 14 180.019 178.178 163.325 1 60.4 ? C37 6PL 101 E 1 HETATM 42 C C38 6PL . . . QA 14 180.278 178.722 164.719 1 60.4 ? C38 6PL 101 E 1 HETATM 43 C C39 6PL . . . QA 14 179.567 177.855 165.744 1 60.4 ? C39 6PL 101 E 1 HETATM 44 C C40 6PL . . . QA 14 180.201 176.474 165.768 1 60.4 ? C40 6PL 101 E 1 HETATM 45 C C41 6PL . . . QA 14 179.312 175.459 166.469 1 60.4 ? C41 6PL 101 E 1 HETATM 46 C C42 6PL . . . QA 14 179.974 174.092 166.435 1 60.4 ? C42 6PL 101 E 1 HETATM 47 C C43 6PL . . . QA 14 179.094 173.032 167.075 1 60.4 ? C43 6PL 101 E 1 HETATM 48 C C44 6PL . . . QA 14 178.79 173.386 168.52 1 60.4 ? C44 6PL 101 E 1 HETATM 49 C C45 6PL . . . QA 14 178.513 172.138 169.344 1 60.4 ? C45 6PL 101 E 1 HETATM 50 C C46 6PL . . . QA 14 177.349 171.352 168.767 1 60.4 ? C46 6PL 101 E 1 HETATM 51 C C47 6PL . . . QA 14 176.884 170.286 169.747 1 60.4 ? C47 6PL 101 E 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #